RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 DNAJC5GQ8N7S2 189 aa16.34■□□□□ 0.21
VRK3-212ENST00000596814 PPTC7Q8NI37 304 aa16.34■□□□□ 0.21
VRK3-212ENST00000596814 SPATA20Q8TB22 786 aa16.34■□□□□ 0.21
VRK3-212ENST00000596814 FUCA2Q9BTY2 467 aa16.34■□□□□ 0.21
VRK3-212ENST00000596814 FAM184BQ9ULE4 1060 aa16.34■□□□□ 0.21
VRK3-212ENST00000596814 EMSYQ7Z589 1322 aa16.34■□□□□ 0.21
VRK3-212ENST00000596814 MYMKA6NI61 221 aa16.33■□□□□ 0.21
VRK3-212ENST00000596814 ZBTB39O15060 712 aa16.33■□□□□ 0.21
VRK3-212ENST00000596814 ADCY3O60266 1144 aa16.33■□□□□ 0.21
VRK3-212ENST00000596814 ZNF862O60290 1169 aa16.33■□□□□ 0.21
VRK3-212ENST00000596814 AKR1A1P14550 325 aa16.33■□□□□ 0.21
VRK3-212ENST00000596814 ELNP15502 786 aa16.33■□□□□ 0.21
VRK3-212ENST00000596814 ASIC1P78348 528 aa16.33■□□□□ 0.21
VRK3-212ENST00000596814 PRKCEQ02156 737 aa16.33■□□□□ 0.21
VRK3-212ENST00000596814 TRPV1Q8NER1 839 aa16.33■□□□□ 0.21
VRK3-212ENST00000596814 AFAP1L1Q8TED9 768 aa16.33■□□□□ 0.21
VRK3-212ENST00000596814 CCDC43Q96MW1 224 aaKnown RBP16.33■□□□□ 0.21
VRK3-212ENST00000596814 PCYT2Q99447 389 aa16.33■□□□□ 0.21
VRK3-212ENST00000596814 AZI2Q9H6S1 392 aa16.33■□□□□ 0.21
VRK3-212ENST00000596814 DBR1Q9UK59 544 aaKnown RBP16.33■□□□□ 0.21
VRK3-212ENST00000596814 GNEQ9Y223 722 aaKnown RBP16.33■□□□□ 0.21
VRK3-212ENST00000596814 MAFBQ9Y5Q3 323 aaPredicted RBP16.33■□□□□ 0.21
VRK3-212ENST00000596814 ARHGEF35A5YM69 484 aa16.33■□□□□ 0.2
VRK3-212ENST00000596814 BIN1O00499 593 aa16.33■□□□□ 0.2
VRK3-212ENST00000596814 LGR5O75473 907 aa16.33■□□□□ 0.2
VRK3-212ENST00000596814 HMGCRP04035 888 aa16.33■□□□□ 0.2
VRK3-212ENST00000596814 XRCC6P12956 609 aaKnown RBP eCLIP16.33■□□□□ 0.2
VRK3-212ENST00000596814 CYP11B2P19099 503 aa16.33■□□□□ 0.2
VRK3-212ENST00000596814 SARSP49591 514 aaKnown RBP16.33■□□□□ 0.2
VRK3-212ENST00000596814 STX1AQ16623 288 aa16.33■□□□□ 0.2
VRK3-212ENST00000596814 CNNM4Q6P4Q7 775 aa16.33■□□□□ 0.2
VRK3-212ENST00000596814 AFG1LQ8WV93 481 aa16.33■□□□□ 0.2
VRK3-212ENST00000596814 DDX12PQ92771 950 aa16.33■□□□□ 0.2
VRK3-212ENST00000596814 GSDMAQ96QA5 445 aa16.33■□□□□ 0.2
VRK3-212ENST00000596814 BMP2KQ9NSY1 1161 aaPredicted RBP16.33■□□□□ 0.2
VRK3-212ENST00000596814 ANKEF1Q9NU02 776 aa16.33■□□□□ 0.2
VRK3-212ENST00000596814 MAN1B1Q9UKM7 699 aa16.33■□□□□ 0.2
VRK3-212ENST00000596814 RPN1P04843 607 aaKnown RBP16.32■□□□□ 0.2
VRK3-212ENST00000596814 RARRES1P49788 294 aa16.32■□□□□ 0.2
VRK3-212ENST00000596814 STAT5BP51692 787 aa16.32■□□□□ 0.2
VRK3-212ENST00000596814 TRIM32Q13049 653 aa16.32■□□□□ 0.2
VRK3-212ENST00000596814 UTP14CQ5TAP6 766 aaKnown RBP16.32■□□□□ 0.2
VRK3-212ENST00000596814 OTUD6AQ7L8S5 288 aa16.32■□□□□ 0.2
VRK3-212ENST00000596814 DYMQ7RTS9 669 aa16.32■□□□□ 0.2
VRK3-212ENST00000596814 TLK2Q86UE8 772 aa16.32■□□□□ 0.2
VRK3-212ENST00000596814 TRIML1Q8N9V2 468 aa16.32■□□□□ 0.2
VRK3-212ENST00000596814 PXYLP1Q8TE99 480 aa16.32■□□□□ 0.2
VRK3-212ENST00000596814 LENG1Q96BZ8 264 aaPredicted RBP16.32■□□□□ 0.2
VRK3-212ENST00000596814 TSPY26PQ9H489 355 aa16.32■□□□□ 0.2
VRK3-212ENST00000596814 RMND1Q9NWS8 449 aa16.32■□□□□ 0.2
VRK3-212ENST00000596814 SEPT9Q9UHD8 586 aaPredicted RBP16.32■□□□□ 0.2
VRK3-212ENST00000596814 TRIM17Q9Y577 477 aa16.32■□□□□ 0.2
VRK3-212ENST00000596814 OATP04181 439 aa16.31■□□□□ 0.2
VRK3-212ENST00000596814 KRT18P05783 430 aaKnown RBP16.31■□□□□ 0.2
VRK3-212ENST00000596814 MMP3P08254 477 aa16.31■□□□□ 0.2
VRK3-212ENST00000596814 PRKAR2AP13861 404 aaKnown RBP16.31■□□□□ 0.2
VRK3-212ENST00000596814 CACNB2Q08289 660 aaPredicted RBP16.31■□□□□ 0.2
VRK3-212ENST00000596814 XKR3Q5GH77 459 aa16.31■□□□□ 0.2
VRK3-212ENST00000596814 PLA2G4FQ68DD2 849 aa16.31■□□□□ 0.2
VRK3-212ENST00000596814 RINT1Q6NUQ1 792 aa16.31■□□□□ 0.2
VRK3-212ENST00000596814 ANO5Q75V66 913 aa16.31■□□□□ 0.2
VRK3-212ENST00000596814 TRMT1LQ7Z2T5 733 aaKnown RBP16.31■□□□□ 0.2
VRK3-212ENST00000596814 TRIM50Q86XT4 487 aa16.31■□□□□ 0.2
VRK3-212ENST00000596814 GLG1Q92896 1179 aa16.31■□□□□ 0.2
VRK3-212ENST00000596814 CCDC47Q96A33 483 aaKnown RBP16.31■□□□□ 0.2
VRK3-212ENST00000596814 RUSC1Q9BVN2 902 aa16.31■□□□□ 0.2
VRK3-212ENST00000596814 ANO10Q9NW15 660 aa16.31■□□□□ 0.2
VRK3-212ENST00000596814 TMEM150BA6NC51 233 aa16.31■□□□□ 0.2
VRK3-212ENST00000596814 DYNC1LI2O43237 492 aaPredicted RBP16.31■□□□□ 0.2
VRK3-212ENST00000596814 KLRC4O43908 158 aa16.31■□□□□ 0.2
VRK3-212ENST00000596814 STBD1O95210 358 aa16.31■□□□□ 0.2
VRK3-212ENST00000596814 NLRP12P59046 1061 aa16.31■□□□□ 0.2
VRK3-212ENST00000596814 KCNB1Q14721 858 aa16.31■□□□□ 0.2
VRK3-212ENST00000596814 ARSHQ5FYA8 562 aa16.31■□□□□ 0.2
VRK3-212ENST00000596814 XKR9Q5GH70 373 aa16.31■□□□□ 0.2
VRK3-212ENST00000596814 ISM2Q6H9L7 571 aa16.31■□□□□ 0.2
VRK3-212ENST00000596814 UNC13DQ70J99 1090 aa16.31■□□□□ 0.2
VRK3-212ENST00000596814 PLPPR4Q7Z2D5 763 aa16.31■□□□□ 0.2
VRK3-212ENST00000596814 SLAIN1Q8ND83 568 aa16.31■□□□□ 0.2
VRK3-212ENST00000596814 DNAJC19Q96DA6 116 aa16.31■□□□□ 0.2
VRK3-212ENST00000596814 FAM167AQ96KS9 214 aa16.31■□□□□ 0.2
VRK3-212ENST00000596814 SMARCAD1Q9H4L7 1026 aa16.31■□□□□ 0.2
VRK3-212ENST00000596814 EXOC1Q9NV70 894 aa16.31■□□□□ 0.2
VRK3-212ENST00000596814 KCND2Q9NZV8 630 aa16.31■□□□□ 0.2
VRK3-212ENST00000596814 Q9Y3F1 56 aa16.31■□□□□ 0.2
VRK3-212ENST00000596814 SEPT4O43236 478 aa16.3■□□□□ 0.2
VRK3-212ENST00000596814 LGALS2P05162 132 aa16.3■□□□□ 0.2
VRK3-212ENST00000596814 HOXD8P13378 290 aaPredicted RBP16.3■□□□□ 0.2
VRK3-212ENST00000596814 ATP4AP20648 1035 aa16.3■□□□□ 0.2
VRK3-212ENST00000596814 CNGA1P29973 690 aa16.3■□□□□ 0.2
VRK3-212ENST00000596814 SLC26A2P50443 739 aa16.3■□□□□ 0.2
VRK3-212ENST00000596814 MORC3Q14149 939 aa16.3■□□□□ 0.2
VRK3-212ENST00000596814 KMT5BQ4FZB7 885 aa16.3■□□□□ 0.2
VRK3-212ENST00000596814 AP5M1Q9H0R1 490 aa16.3■□□□□ 0.2
VRK3-212ENST00000596814 NPHP3-ACAD11A0A0J9YXS1 232 aa16.29■□□□□ 0.2
VRK3-212ENST00000596814 PVALEFA0A1B0GWK0 134 aa16.29■□□□□ 0.2
VRK3-212ENST00000596814 DUSP11O75319 330 aaKnown RBP16.29■□□□□ 0.2
VRK3-212ENST00000596814 PPFIA4O75335 1185 aa16.29■□□□□ 0.2
VRK3-212ENST00000596814 IDEP14735 1019 aa16.29■□□□□ 0.2
VRK3-212ENST00000596814 RAD51AP2Q09MP3 1159 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms