RNA–Protein interactions for RNA: ENST00000595758.5

LIG1-208, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 606 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-208ENST00000595758 RETREG2Q8NC44 543 aa16.12■□□□□ 0.17
LIG1-208ENST00000595758 FOXD4L4Q8WXT5 416 aaPredicted RBP16.12■□□□□ 0.17
LIG1-208ENST00000595758 BADQ92934 168 aa16.12■□□□□ 0.17
LIG1-208ENST00000595758 EIF2AK1Q9BQI3 630 aaKnown RBP16.12■□□□□ 0.17
LIG1-208ENST00000595758 RGL1Q9NZL6 768 aa16.12■□□□□ 0.17
LIG1-208ENST00000595758 MBLAC1A4D2B0 266 aaPredicted RBP16.11■□□□□ 0.17
LIG1-208ENST00000595758 POTEMA6NI47 508 aa16.11■□□□□ 0.17
LIG1-208ENST00000595758 DDX11L8A8MPP1 907 aa16.11■□□□□ 0.17
LIG1-208ENST00000595758 BMP15O95972 392 aa16.11■□□□□ 0.17
LIG1-208ENST00000595758 MAGEA10P43363 369 aaPredicted RBP16.11■□□□□ 0.17
LIG1-208ENST00000595758 FXR2P51116 673 aaKnown RBP eCLIP16.11■□□□□ 0.17
LIG1-208ENST00000595758 ATP2C1P98194 919 aaPredicted RBP16.11■□□□□ 0.17
LIG1-208ENST00000595758 MDM2Q00987 491 aaPredicted RBP16.11■□□□□ 0.17
LIG1-208ENST00000595758 XKR3Q5GH77 459 aa16.11■□□□□ 0.17
LIG1-208ENST00000595758 MARCH8Q5T0T0 291 aa16.11■□□□□ 0.17
LIG1-208ENST00000595758 MFSD5Q6N075 450 aa16.11■□□□□ 0.17
LIG1-208ENST00000595758 DTHD1Q6ZMT9 781 aa16.11■□□□□ 0.17
LIG1-208ENST00000595758 CAGE1Q8TC20 777 aa16.11■□□□□ 0.17
LIG1-208ENST00000595758 TRAPPC12Q8WVT3 735 aa16.11■□□□□ 0.17
LIG1-208ENST00000595758 DHX38Q92620 1227 aaKnown RBP16.11■□□□□ 0.17
LIG1-208ENST00000595758 DYDC2Q96IM9 177 aa16.11■□□□□ 0.17
LIG1-208ENST00000595758 HSD17B14Q9BPX1 270 aa16.11■□□□□ 0.17
LIG1-208ENST00000595758 TUBE1Q9UJT0 475 aa16.11■□□□□ 0.17
LIG1-208ENST00000595758 CEP131Q9UPN4 1083 aa16.11■□□□□ 0.17
LIG1-208ENST00000595758 MYH9P35579 1960 aaKnown RBP16.11■□□□□ 0.17
LIG1-208ENST00000595758 COL1A2P08123 1366 aa16.11■□□□□ 0.17
LIG1-208ENST00000595758 ZBTB42B2RXF5 422 aa16.1■□□□□ 0.17
LIG1-208ENST00000595758 PITPNM1O00562 1244 aa16.1■□□□□ 0.17
LIG1-208ENST00000595758 SLITRK3O94933 977 aa16.1■□□□□ 0.17
LIG1-208ENST00000595758 CYP4A11Q02928 519 aa16.1■□□□□ 0.17
LIG1-208ENST00000595758 PKP1Q13835 747 aa16.1■□□□□ 0.17
LIG1-208ENST00000595758 CTTNQ14247 550 aaKnown RBP16.1■□□□□ 0.17
LIG1-208ENST00000595758 PDIA5Q14554 519 aa16.1■□□□□ 0.17
LIG1-208ENST00000595758 SF3A1Q15459 793 aaKnown RBP16.1■□□□□ 0.17
LIG1-208ENST00000595758 IL17AQ16552 155 aa16.1■□□□□ 0.17
LIG1-208ENST00000595758 TAF2Q6P1X5 1199 aa16.1■□□□□ 0.17
LIG1-208ENST00000595758 TPH2Q8IWU9 490 aa16.1■□□□□ 0.17
LIG1-208ENST00000595758 ERMNQ8TAM6 284 aa16.1■□□□□ 0.17
LIG1-208ENST00000595758 NEK9Q8TD19 979 aa16.1■□□□□ 0.17
LIG1-208ENST00000595758 WNT8BQ93098 351 aa16.1■□□□□ 0.17
LIG1-208ENST00000595758 LXNQ9BS40 222 aa16.1■□□□□ 0.17
LIG1-208ENST00000595758 RAB34Q9BZG1 259 aa16.1■□□□□ 0.17
LIG1-208ENST00000595758 ZSWIM4Q9H7M6 989 aa16.1■□□□□ 0.17
LIG1-208ENST00000595758 KAT6AQ92794 2004 aa16.1■□□□□ 0.17
LIG1-208ENST00000595758 UMODL1Q5DID0 1318 aa16.1■□□□□ 0.17
LIG1-208ENST00000595758 TRIP12Q14669 1992 aaPredicted RBP16.09■□□□□ 0.17
LIG1-208ENST00000595758 STBD1O95210 358 aa16.09■□□□□ 0.17
LIG1-208ENST00000595758 F13A1P00488 732 aa16.09■□□□□ 0.17
LIG1-208ENST00000595758 CKBP12277 381 aa16.09■□□□□ 0.17
LIG1-208ENST00000595758 KLRC1P26715 233 aa16.09■□□□□ 0.17
LIG1-208ENST00000595758 THPOP40225 353 aa16.09■□□□□ 0.17
LIG1-208ENST00000595758 CCL23P55773 120 aa16.09■□□□□ 0.17
LIG1-208ENST00000595758 RBL2Q08999 1139 aa16.09■□□□□ 0.17
LIG1-208ENST00000595758 TRIM71Q2Q1W2 868 aaKnown RBP16.09■□□□□ 0.17
LIG1-208ENST00000595758 ARL6IP4Q66PJ3 421 aaKnown RBP16.09■□□□□ 0.17
LIG1-208ENST00000595758 MTHFD1LQ6UB35 978 aa16.09■□□□□ 0.17
LIG1-208ENST00000595758 RUFY4Q6ZNE9 571 aa16.09■□□□□ 0.17
LIG1-208ENST00000595758 C4orf19Q8IY42 314 aa16.09■□□□□ 0.17
LIG1-208ENST00000595758 TMEM199Q8N511 208 aa16.09■□□□□ 0.17
LIG1-208ENST00000595758 ZBTB10Q96DT7 871 aa16.09■□□□□ 0.17
LIG1-208ENST00000595758 NIFKQ9BYG3 293 aaKnown RBP16.09■□□□□ 0.17
LIG1-208ENST00000595758 WRAP73Q9P2S5 460 aaPredicted RBP16.09■□□□□ 0.17
LIG1-208ENST00000595758 LRWD1Q9UFC0 647 aa16.09■□□□□ 0.17
LIG1-208ENST00000595758 SEPT9Q9UHD8 586 aaPredicted RBP16.09■□□□□ 0.17
LIG1-208ENST00000595758 PCDHA2Q9Y5H9 948 aa16.09■□□□□ 0.17
LIG1-208ENST00000595758 CLIC4Q9Y696 253 aa16.09■□□□□ 0.17
LIG1-208ENST00000595758 LYPLA2O95372 231 aa16.08■□□□□ 0.16
LIG1-208ENST00000595758 SELPP16109 830 aa16.08■□□□□ 0.16
LIG1-208ENST00000595758 CEBPZQ03701 1054 aaKnown RBP16.08■□□□□ 0.16
LIG1-208ENST00000595758 FPGSQ05932 587 aa16.08■□□□□ 0.16
LIG1-208ENST00000595758 ANO5Q75V66 913 aa16.08■□□□□ 0.16
LIG1-208ENST00000595758 RSPH3Q86UC2 560 aa16.08■□□□□ 0.16
LIG1-208ENST00000595758 IGSF22Q8N9C0 903 aa16.08■□□□□ 0.16
LIG1-208ENST00000595758 ZNF396Q96N95 335 aaPredicted RBP16.08■□□□□ 0.16
LIG1-208ENST00000595758 GDF15Q99988 308 aa16.08■□□□□ 0.16
LIG1-208ENST00000595758 POLR3CQ9BUI4 534 aaPredicted RBP16.08■□□□□ 0.16
LIG1-208ENST00000595758 FTOQ9C0B1 505 aaKnown RBP eCLIP16.08■□□□□ 0.16
LIG1-208ENST00000595758 FAM49AQ9H0Q0 323 aaPredicted RBP16.08■□□□□ 0.16
LIG1-208ENST00000595758 WNT8AQ9H1J5 351 aa16.08■□□□□ 0.16
LIG1-208ENST00000595758 TUFT1Q9NNX1 390 aa16.08■□□□□ 0.16
LIG1-208ENST00000595758 STK24Q9Y6E0 443 aa16.08■□□□□ 0.16
LIG1-208ENST00000595758 TMEM150BA6NC51 233 aa16.07■□□□□ 0.16
LIG1-208ENST00000595758 VWA3AA6NCI4 1184 aa16.07■□□□□ 0.16
LIG1-208ENST00000595758 MAGEB2O15479 319 aa16.07■□□□□ 0.16
LIG1-208ENST00000595758 CAND2O75155 1236 aa16.07■□□□□ 0.16
LIG1-208ENST00000595758 C22orf31O95567 290 aa16.07■□□□□ 0.16
LIG1-208ENST00000595758 IQCF3P0C7M6 154 aa16.07■□□□□ 0.16
LIG1-208ENST00000595758 SPATA31C1P0DKV0 1188 aa16.07■□□□□ 0.16
LIG1-208ENST00000595758 CSF2RAP15509 400 aa16.07■□□□□ 0.16
LIG1-208ENST00000595758 YWHABP31946 246 aaKnown RBP16.07■□□□□ 0.16
LIG1-208ENST00000595758 ANP32AP39687 249 aaKnown RBP16.07■□□□□ 0.16
LIG1-208ENST00000595758 PPIGQ13427 754 aaKnown RBP eCLIP16.07■□□□□ 0.167e-7■■□□□ 12.4
LIG1-208ENST00000595758 TARBP2Q15633 366 aaKnown RBP16.07■□□□□ 0.16
LIG1-208ENST00000595758 MTERF2Q49AM1 385 aa16.07■□□□□ 0.16
LIG1-208ENST00000595758 ZNF618Q5T7W0 954 aa16.07■□□□□ 0.16
LIG1-208ENST00000595758 HAUS3Q68CZ6 603 aa16.07■□□□□ 0.16
LIG1-208ENST00000595758 CHRDL2Q6WN34 429 aa16.07■□□□□ 0.16
LIG1-208ENST00000595758 LRRC8DQ7L1W4 858 aa16.07■□□□□ 0.16
LIG1-208ENST00000595758 OTUD6AQ7L8S5 288 aa16.07■□□□□ 0.16
LIG1-208ENST00000595758 RPAINQ86UA6 219 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms