RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 TAF2Q6P1X5 1199 aa16.41■□□□□ 0.22
VRK3-206ENST00000594090 DEFB128Q7Z7B8 93 aa16.41■□□□□ 0.22
VRK3-206ENST00000594090 CKAP2LQ8IYA6 745 aa16.41■□□□□ 0.22
VRK3-206ENST00000594090 SLFN12Q8IYM2 578 aa16.41■□□□□ 0.22
VRK3-206ENST00000594090 TRAPPC12Q8WVT3 735 aa16.41■□□□□ 0.22
VRK3-206ENST00000594090 COL1A2P08123 1366 aa16.4■□□□□ 0.22
VRK3-206ENST00000594090 K7ELQ4 463 aaPredicted RBP16.4■□□□□ 0.22
VRK3-206ENST00000594090 SOX1O00570 391 aaPredicted RBP16.4■□□□□ 0.22
VRK3-206ENST00000594090 ZNF862O60290 1169 aa16.4■□□□□ 0.22
VRK3-206ENST00000594090 ATP2B1P20020 1258 aa16.4■□□□□ 0.22
VRK3-206ENST00000594090 MCM7P33993 719 aa16.4■□□□□ 0.22
VRK3-206ENST00000594090 PRKCEQ02156 737 aa16.4■□□□□ 0.22
VRK3-206ENST00000594090 GPNMBQ14956 572 aa16.4■□□□□ 0.22
VRK3-206ENST00000594090 BBXQ8WY36 941 aaPredicted RBP16.4■□□□□ 0.22
VRK3-206ENST00000594090 HERVK_113Q902F9 699 aa16.4■□□□□ 0.22
VRK3-206ENST00000594090 ZBTB10Q96DT7 871 aa16.4■□□□□ 0.22
VRK3-206ENST00000594090 FAM167AQ96KS9 214 aa16.4■□□□□ 0.22
VRK3-206ENST00000594090 TRIOBPQ9H2D6 2365 aa16.4■□□□□ 0.22
VRK3-206ENST00000594090 ZBTB42B2RXF5 422 aa16.39■□□□□ 0.21
VRK3-206ENST00000594090 H3BQV1 296 aa16.39■□□□□ 0.21
VRK3-206ENST00000594090 EML1O00423 815 aa16.39■□□□□ 0.21
VRK3-206ENST00000594090 FGBP02675 491 aa16.39■□□□□ 0.21
VRK3-206ENST00000594090 OATP04181 439 aa16.39■□□□□ 0.21
VRK3-206ENST00000594090 TRAPPC10P48553 1259 aa16.39■□□□□ 0.21
VRK3-206ENST00000594090 SPIRE1Q08AE8 756 aa16.39■□□□□ 0.21
VRK3-206ENST00000594090 ORC2Q13416 577 aaPredicted RBP16.39■□□□□ 0.21
VRK3-206ENST00000594090 MBTPS1Q14703 1052 aa16.39■□□□□ 0.21
VRK3-206ENST00000594090 ZNF484Q5JVG2 852 aa16.39■□□□□ 0.21
VRK3-206ENST00000594090 RASIP1Q5U651 963 aa16.39■□□□□ 0.21
VRK3-206ENST00000594090 TRMT1LQ7Z2T5 733 aaKnown RBP16.39■□□□□ 0.21
VRK3-206ENST00000594090 RPAINQ86UA6 219 aa16.39■□□□□ 0.21
VRK3-206ENST00000594090 SNX21Q969T3 373 aa16.39■□□□□ 0.21
VRK3-206ENST00000594090 NOL7Q9UMY1 257 aaKnown RBP16.39■□□□□ 0.21
VRK3-206ENST00000594090 SIP14410 1827 aa16.39■□□□□ 0.21
VRK3-206ENST00000594090 RSPH10B2B2RC85 870 aa16.38■□□□□ 0.21
VRK3-206ENST00000594090 NBNO60934 754 aa16.38■□□□□ 0.21
VRK3-206ENST00000594090 CTSHP09668 335 aa16.38■□□□□ 0.21
VRK3-206ENST00000594090 RSPH10BP0C881 870 aa16.38■□□□□ 0.21
VRK3-206ENST00000594090 TTC38Q5R3I4 469 aa16.38■□□□□ 0.21
VRK3-206ENST00000594090 MCTP1Q6DN14 999 aa16.38■□□□□ 0.21
VRK3-206ENST00000594090 OTOP2Q7RTS6 562 aa16.38■□□□□ 0.21
VRK3-206ENST00000594090 BANK1Q8NDB2 785 aa16.38■□□□□ 0.21
VRK3-206ENST00000594090 DNAJB3Q8WWF6 145 aa16.38■□□□□ 0.21
VRK3-206ENST00000594090 LRCH3Q96II8 777 aa16.38■□□□□ 0.21
VRK3-206ENST00000594090 MTMR9Q96QG7 549 aa16.38■□□□□ 0.21
VRK3-206ENST00000594090 FTOQ9C0B1 505 aaKnown RBP eCLIP16.38■□□□□ 0.21
VRK3-206ENST00000594090 TMEM60Q9H2L4 133 aa16.38■□□□□ 0.21
VRK3-206ENST00000594090 PCDHA2Q9Y5H9 948 aa16.38■□□□□ 0.21
VRK3-206ENST00000594090 CXCL10P02778 98 aa16.37■□□□□ 0.21
VRK3-206ENST00000594090 ZNF174Q15697 407 aa16.37■□□□□ 0.21
VRK3-206ENST00000594090 FAM26DQ5JW98 314 aa16.37■□□□□ 0.21
VRK3-206ENST00000594090 LARP1BQ659C4 914 aaKnown RBP16.37■□□□□ 0.21
VRK3-206ENST00000594090 NCAPH2Q6IBW4 605 aa16.37■□□□□ 0.21
VRK3-206ENST00000594090 MTHFD1LQ6UB35 978 aa16.37■□□□□ 0.21
VRK3-206ENST00000594090 RSPH3Q86UC2 560 aa16.37■□□□□ 0.21
VRK3-206ENST00000594090 INTS4Q96HW7 963 aaKnown RBP16.37■□□□□ 0.21
VRK3-206ENST00000594090 MTIF3Q9H2K0 278 aaKnown RBP16.37■□□□□ 0.21
VRK3-206ENST00000594090 CXXC1Q9P0U4 656 aaPredicted RBP16.37■□□□□ 0.21
VRK3-206ENST00000594090 PCDHA12Q9UN75 941 aa16.37■□□□□ 0.21
VRK3-206ENST00000594090 CEP131Q9UPN4 1083 aa16.37■□□□□ 0.21
VRK3-206ENST00000594090 LAMA2P24043 3122 aaKnown RBP16.37■□□□□ 0.21
VRK3-206ENST00000594090 TET1Q8NFU7 2136 aa16.37■□□□□ 0.21
VRK3-206ENST00000594090 SMIM35A0A1B0GVV1 85 aa16.36■□□□□ 0.21
VRK3-206ENST00000594090 C22orf31O95567 290 aa16.36■□□□□ 0.21
VRK3-206ENST00000594090 RPLP2P05387 115 aaKnown RBP16.36■□□□□ 0.21
VRK3-206ENST00000594090 ACTN1P12814 892 aa16.36■□□□□ 0.21
VRK3-206ENST00000594090 KLRC1P26715 233 aa16.36■□□□□ 0.21
VRK3-206ENST00000594090 TXKP42681 527 aa16.36■□□□□ 0.21
VRK3-206ENST00000594090 TOB1P50616 345 aaPredicted RBP16.36■□□□□ 0.21
VRK3-206ENST00000594090 PSMC5P62195 406 aa16.36■□□□□ 0.21
VRK3-206ENST00000594090 MGAT3Q09327 533 aa16.36■□□□□ 0.21
VRK3-206ENST00000594090 NBR1Q14596 966 aa16.36■□□□□ 0.21
VRK3-206ENST00000594090 EPHA7Q15375 998 aa16.36■□□□□ 0.21
VRK3-206ENST00000594090 FAM49AQ9H0Q0 323 aaPredicted RBP16.36■□□□□ 0.21
VRK3-206ENST00000594090 TTC12Q9H892 705 aaPredicted RBP16.36■□□□□ 0.21
VRK3-206ENST00000594090 NRBP2Q9NSY0 501 aa16.36■□□□□ 0.21
VRK3-206ENST00000594090 STBD1O95210 358 aa16.36■□□□□ 0.21
VRK3-206ENST00000594090 CHRNA1P02708 482 aa16.36■□□□□ 0.21
VRK3-206ENST00000594090 P4HBP07237 508 aaKnown RBP16.36■□□□□ 0.21
VRK3-206ENST00000594090 OR52Z1P0C646 297 aa16.36■□□□□ 0.21
VRK3-206ENST00000594090 QARSP47897 775 aaKnown RBP16.36■□□□□ 0.21
VRK3-206ENST00000594090 XKR3Q5GH77 459 aa16.36■□□□□ 0.21
VRK3-206ENST00000594090 CNKSR3Q6P9H4 555 aa16.36■□□□□ 0.21
VRK3-206ENST00000594090 HSCBQ8IWL3 235 aa16.36■□□□□ 0.21
VRK3-206ENST00000594090 SEPT9Q9UHD8 586 aaPredicted RBP16.36■□□□□ 0.21
VRK3-206ENST00000594090 ZBBXA8MT70 800 aa16.35■□□□□ 0.21
VRK3-206ENST00000594090 RBAK-RBAKDNI3L0D1 243 aa16.35■□□□□ 0.21
VRK3-206ENST00000594090 MRPS6P82932 125 aaKnown RBP16.35■□□□□ 0.21
VRK3-206ENST00000594090 SMAD3P84022 425 aaKnown RBP16.35■□□□□ 0.21
VRK3-206ENST00000594090 PLEKHG4Q58EX7 1191 aa16.35■□□□□ 0.21
VRK3-206ENST00000594090 LXNQ9BS40 222 aa16.35■□□□□ 0.21
VRK3-206ENST00000594090 NIFKQ9BYG3 293 aaKnown RBP16.35■□□□□ 0.21
VRK3-206ENST00000594090 OSBPL7Q9BZF2 842 aa16.35■□□□□ 0.21
VRK3-206ENST00000594090 WRAP73Q9P2S5 460 aaPredicted RBP16.35■□□□□ 0.21
VRK3-206ENST00000594090 PCDHB6Q9Y5E3 794 aa16.35■□□□□ 0.21
VRK3-206ENST00000594090 CDY2AQ9Y6F7 541 aa16.35■□□□□ 0.21
VRK3-206ENST00000594090 TMEM150BA6NC51 233 aa16.34■□□□□ 0.21
VRK3-206ENST00000594090 POTEMA6NI47 508 aa16.34■□□□□ 0.21
VRK3-206ENST00000594090 DKC1O60832 514 aaKnown RBP eCLIP16.34■□□□□ 0.21
VRK3-206ENST00000594090 BAIAP3O94812 1187 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms