RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 MGAMO43451 1857 aa11.68□□□□□ -0.54
SS18-217ENST00000580958 DNAJC25-GNG10A0A024R161 153 aa11.68□□□□□ -0.54
SS18-217ENST00000580958 ARHGEF35A5YM69 484 aa11.68□□□□□ -0.54
SS18-217ENST00000580958 RSPH10B2B2RC85 870 aa11.68□□□□□ -0.54
SS18-217ENST00000580958 B4DLN1 442 aa11.68□□□□□ -0.54
SS18-217ENST00000580958 RSPH10BP0C881 870 aa11.68□□□□□ -0.54
SS18-217ENST00000580958 SFNP31947 248 aa11.68□□□□□ -0.54
SS18-217ENST00000580958 QARSP47897 775 aaKnown RBP11.68□□□□□ -0.54
SS18-217ENST00000580958 GCLCP48506 637 aaPredicted RBP11.68□□□□□ -0.54
SS18-217ENST00000580958 ZNF157P51786 506 aaPredicted RBP11.68□□□□□ -0.54
SS18-217ENST00000580958 PMS1P54277 932 aaKnown RBP11.68□□□□□ -0.54
SS18-217ENST00000580958 CCNA1P78396 465 aa11.68□□□□□ -0.54
SS18-217ENST00000580958 HERC4Q5GLZ8 1057 aaPredicted RBP11.68□□□□□ -0.54
SS18-217ENST00000580958 TTI2Q6NXR4 508 aa11.68□□□□□ -0.54
SS18-217ENST00000580958 C1orf186Q6ZWK4 172 aa11.68□□□□□ -0.54
SS18-217ENST00000580958 CCDC186Q7Z3E2 898 aa11.68□□□□□ -0.54
SS18-217ENST00000580958 TMC6Q7Z403 805 aa11.68□□□□□ -0.54
SS18-217ENST00000580958 GUF1Q8N442 669 aaKnown RBP11.68□□□□□ -0.54
SS18-217ENST00000580958 GLIS3Q8NEA6 775 aa11.68□□□□□ -0.54
SS18-217ENST00000580958 RDM1Q8NG50 284 aa11.68□□□□□ -0.54
SS18-217ENST00000580958 TRIM47Q96LD4 638 aa11.68□□□□□ -0.54
SS18-217ENST00000580958 NAP1L5Q96NT1 182 aaPredicted RBP11.68□□□□□ -0.54
SS18-217ENST00000580958 PARK7Q99497 189 aaKnown RBP11.68□□□□□ -0.54
SS18-217ENST00000580958 DUSP9Q99956 384 aaKnown RBP11.68□□□□□ -0.54
SS18-217ENST00000580958 SENP7Q9BQF6 1050 aa11.68□□□□□ -0.54
SS18-217ENST00000580958 FGFBP2Q9BYJ0 223 aa11.68□□□□□ -0.54
SS18-217ENST00000580958 SEMA6BQ9H3T3 888 aa11.68□□□□□ -0.54
SS18-217ENST00000580958 POLD4Q9HCU8 107 aa11.68□□□□□ -0.54
SS18-217ENST00000580958 MORF4L1Q9UBU8 362 aa11.68□□□□□ -0.54
SS18-217ENST00000580958 TELO2Q9Y4R8 837 aa11.68□□□□□ -0.54
SS18-217ENST00000580958 PCDHA2Q9Y5H9 948 aa11.68□□□□□ -0.54
SS18-217ENST00000580958 ZNF236Q9UL36 1845 aa11.67□□□□□ -0.54
SS18-217ENST00000580958 PASKQ96RG2 1323 aa11.67□□□□□ -0.54
SS18-217ENST00000580958 BICDL2A1A5D9 508 aa11.67□□□□□ -0.54
SS18-217ENST00000580958 TBCAO75347 108 aaKnown RBP11.67□□□□□ -0.54
SS18-217ENST00000580958 FAM13AO94988 1023 aa11.67□□□□□ -0.54
SS18-217ENST00000580958 LYPLA2O95372 231 aa11.67□□□□□ -0.54
SS18-217ENST00000580958 PTGS1P23219 599 aa11.67□□□□□ -0.54
SS18-217ENST00000580958 PSMC5P62195 406 aa11.67□□□□□ -0.54
SS18-217ENST00000580958 SP2Q02086 613 aa11.67□□□□□ -0.54
SS18-217ENST00000580958 SP4Q02446 784 aa11.67□□□□□ -0.54
SS18-217ENST00000580958 CCDC144BQ3MJ40 725 aa11.67□□□□□ -0.54
SS18-217ENST00000580958 ANKRD40Q6AI12 368 aa11.67□□□□□ -0.54
SS18-217ENST00000580958 CENPPQ6IPU0 288 aa11.67□□□□□ -0.54
SS18-217ENST00000580958 SFR1Q86XK3 245 aa11.67□□□□□ -0.54
SS18-217ENST00000580958 MYOCDQ8IZQ8 938 aa11.67□□□□□ -0.54
SS18-217ENST00000580958 ZNF830Q96NB3 372 aaPredicted RBP11.67□□□□□ -0.54
SS18-217ENST00000580958 MPHOSPH6Q99547 160 aaKnown RBP11.67□□□□□ -0.54
SS18-217ENST00000580958 JPH1Q9HDC5 661 aaPredicted RBP11.67□□□□□ -0.54
SS18-217ENST00000580958 INTS13Q9NVM9 706 aa11.67□□□□□ -0.54
SS18-217ENST00000580958 SLC9A2Q9UBY0 812 aa11.67□□□□□ -0.54
SS18-217ENST00000580958 DBR1Q9UK59 544 aaKnown RBP11.67□□□□□ -0.54
SS18-217ENST00000580958 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.67□□□□□ -0.54
SS18-217ENST00000580958 MANSC4A6NHS7 340 aaPredicted RBP11.66□□□□□ -0.54
SS18-217ENST00000580958 KCNJ18B7U540 433 aa11.66□□□□□ -0.54
SS18-217ENST00000580958 TPM3P06753 285 aa11.66□□□□□ -0.54
SS18-217ENST00000580958 GAP43P17677 238 aa11.66□□□□□ -0.54
SS18-217ENST00000580958 ACTR2P61160 394 aa11.66□□□□□ -0.54
SS18-217ENST00000580958 SPAG1Q07617 926 aa11.66□□□□□ -0.54
SS18-217ENST00000580958 KCNJ12Q14500 433 aa11.66□□□□□ -0.54
SS18-217ENST00000580958 KRT31Q15323 416 aa11.66□□□□□ -0.54
SS18-217ENST00000580958 RGMBQ6NW40 437 aa11.66□□□□□ -0.54
SS18-217ENST00000580958 PADI6Q6TGC4 694 aa11.66□□□□□ -0.54
SS18-217ENST00000580958 CYFIP1Q7L576 1253 aa11.66□□□□□ -0.54
SS18-217ENST00000580958 EEPD1Q7L9B9 569 aa11.66□□□□□ -0.54
SS18-217ENST00000580958 APTXQ7Z2E3 356 aaKnown RBP11.66□□□□□ -0.54
SS18-217ENST00000580958 C4orf19Q8IY42 314 aa11.66□□□□□ -0.54
SS18-217ENST00000580958 SMAP1Q8IYB5 467 aaPredicted RBP11.66□□□□□ -0.54
SS18-217ENST00000580958 NOC3LQ8WTT2 800 aaKnown RBP11.66□□□□□ -0.54
SS18-217ENST00000580958 SRRTQ9BXP5 876 aaKnown RBP11.66□□□□□ -0.54
SS18-217ENST00000580958 THAP9Q9H5L6 903 aa11.66□□□□□ -0.54
SS18-217ENST00000580958 GABBR1Q9UBS5 961 aa11.66□□□□□ -0.54
SS18-217ENST00000580958 LIMA1Q9UHB6 759 aaKnown RBP11.66□□□□□ -0.54
SS18-217ENST00000580958 PCDHA10Q9Y5I2 948 aa11.66□□□□□ -0.54
SS18-217ENST00000580958 A0A1B0GTH6 734 aa11.65□□□□□ -0.54
SS18-217ENST00000580958 TMEM150BA6NC51 233 aa11.65□□□□□ -0.54
SS18-217ENST00000580958 IGF2BP3O00425 579 aaKnown RBP eCLIP11.65□□□□□ -0.54
SS18-217ENST00000580958 BACH1O14867 736 aa11.65□□□□□ -0.54
SS18-217ENST00000580958 PSAPP07602 524 aa11.65□□□□□ -0.54
SS18-217ENST00000580958 SLC10A3P09131 477 aa11.65□□□□□ -0.54
SS18-217ENST00000580958 SUPT20HL2P0C7V6 817 aa11.65□□□□□ -0.54
SS18-217ENST00000580958 UBA1P22314 1058 aaKnown RBP11.65□□□□□ -0.54
SS18-217ENST00000580958 YWHABP31946 246 aaKnown RBP11.65□□□□□ -0.54
SS18-217ENST00000580958 COPB1P53618 953 aaKnown RBP11.65□□□□□ -0.54
SS18-217ENST00000580958 PTPN21Q16825 1174 aa11.65□□□□□ -0.54
SS18-217ENST00000580958 TCP11X2Q5H9J9 407 aa11.65□□□□□ -0.54
SS18-217ENST00000580958 MIS18BP1Q6P0N0 1132 aa11.65□□□□□ -0.54
SS18-217ENST00000580958 ABHD15Q6UXT9 468 aa11.65□□□□□ -0.54
SS18-217ENST00000580958 FILIP1Q7Z7B0 1213 aa11.65□□□□□ -0.54
SS18-217ENST00000580958 SAPCD2Q86UD0 394 aa11.65□□□□□ -0.54
SS18-217ENST00000580958 ZSCAN30Q86W11 494 aa11.65□□□□□ -0.54
SS18-217ENST00000580958 IRF2BP1Q8IU81 584 aa11.65□□□□□ -0.54
SS18-217ENST00000580958 VSTM4Q8IW00 320 aa11.65□□□□□ -0.54
SS18-217ENST00000580958 CSGALNACT2Q8N6G5 542 aa11.65□□□□□ -0.54
SS18-217ENST00000580958 SCFD1Q8WVM8 642 aa11.65□□□□□ -0.54
SS18-217ENST00000580958 CCDC43Q96MW1 224 aaKnown RBP11.65□□□□□ -0.54
SS18-217ENST00000580958 TSG101Q99816 390 aa11.65□□□□□ -0.54
SS18-217ENST00000580958 KCNF1Q9H3M0 494 aa11.65□□□□□ -0.54
SS18-217ENST00000580958 TAB2Q9NYJ8 693 aa11.65□□□□□ -0.54
SS18-217ENST00000580958 COL4A3BPQ9Y5P4 624 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms