RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 MYLIPQ8WY64 445 aa27.02■■□□□ 1.92
SHMT1-206ENST00000579558 MBOAT7Q96N66 472 aa27.02■■□□□ 1.92
SHMT1-206ENST00000579558 BRMS1Q9HCU9 246 aa27.02■■□□□ 1.92
SHMT1-206ENST00000579558 DDX25Q9UHL0 483 aaKnown RBP27.02■■□□□ 1.92
SHMT1-206ENST00000579558 MYH9P35579 1960 aaKnown RBP27.02■■□□□ 1.92
SHMT1-206ENST00000579558 PTPRSQ13332 1948 aa27.01■■□□□ 1.91
SHMT1-206ENST00000579558 KRT2P35908 639 aa27.01■■□□□ 1.91
SHMT1-206ENST00000579558 FOSBP53539 338 aa27.01■■□□□ 1.91
SHMT1-206ENST00000579558 DEFB103AP81534 67 aa27.01■■□□□ 1.91
SHMT1-206ENST00000579558 PIK3AP1Q6ZUJ8 805 aa27.01■■□□□ 1.91
SHMT1-206ENST00000579558 NEK8Q86SG6 692 aa27.01■■□□□ 1.91
SHMT1-206ENST00000579558 CCDC83Q8IWF9 413 aa27.01■■□□□ 1.91
SHMT1-206ENST00000579558 SEPT8Q92599 483 aa27.01■■□□□ 1.91
SHMT1-206ENST00000579558 GJA10Q969M2 543 aa27.01■■□□□ 1.91
SHMT1-206ENST00000579558 OSBPL7Q9BZF2 842 aa27.01■■□□□ 1.91
SHMT1-206ENST00000579558 FAM49AQ9H0Q0 323 aaPredicted RBP27.01■■□□□ 1.91
SHMT1-206ENST00000579558 GABBR1Q9UBS5 961 aa27.01■■□□□ 1.91
SHMT1-206ENST00000579558 MAFBQ9Y5Q3 323 aaPredicted RBP27.01■■□□□ 1.91
SHMT1-206ENST00000579558 A0A0C4DFX4 3053 aa27.01■■□□□ 1.91
SHMT1-206ENST00000579558 CHMP2AO43633 222 aa27■■□□□ 1.91
SHMT1-206ENST00000579558 CHRNA1P02708 482 aa27■■□□□ 1.91
SHMT1-206ENST00000579558 RPLP2P05387 115 aaKnown RBP27■■□□□ 1.91
SHMT1-206ENST00000579558 ZSCAN31Q96LW9 406 aaPredicted RBP27■■□□□ 1.91
SHMT1-206ENST00000579558 UNC45AQ9H3U1 944 aa27■■□□□ 1.91
SHMT1-206ENST00000579558 DISC1Q9NRI5 854 aa27■■□□□ 1.91
SHMT1-206ENST00000579558 PCDHA2Q9Y5H9 948 aa27■■□□□ 1.91
SHMT1-206ENST00000579558 COL1A2P08123 1366 aa26.99■■□□□ 1.91
SHMT1-206ENST00000579558 KIF28PB7ZC32 967 aa26.99■■□□□ 1.91
SHMT1-206ENST00000579558 PSMD10O75832 226 aa26.99■■□□□ 1.91
SHMT1-206ENST00000579558 ATP4AP20648 1035 aa26.99■■□□□ 1.91
SHMT1-206ENST00000579558 JAK3P52333 1124 aa26.99■■□□□ 1.91
SHMT1-206ENST00000579558 MGAT3Q09327 533 aa26.99■■□□□ 1.91
SHMT1-206ENST00000579558 TRIM29Q14134 588 aa26.99■■□□□ 1.91
SHMT1-206ENST00000579558 PPP2R2DQ66LE6 453 aa26.99■■□□□ 1.91
SHMT1-206ENST00000579558 MTHFD1LQ6UB35 978 aa26.99■■□□□ 1.91
SHMT1-206ENST00000579558 UPF2Q9HAU5 1272 aaKnown RBP26.99■■□□□ 1.91
SHMT1-206ENST00000579558 IGSF9BQ9UPX0 1349 aa26.98■■□□□ 1.91
SHMT1-206ENST00000579558 SIP14410 1827 aa26.98■■□□□ 1.91
SHMT1-206ENST00000579558 SLC37A4O43826 429 aa26.98■■□□□ 1.91
SHMT1-206ENST00000579558 GCFC2P16383 781 aaKnown RBP26.98■■□□□ 1.91
SHMT1-206ENST00000579558 SFNP31947 248 aa26.98■■□□□ 1.91
SHMT1-206ENST00000579558 MRPS6P82932 125 aaKnown RBP26.98■■□□□ 1.91
SHMT1-206ENST00000579558 NR5A1Q13285 461 aa26.98■■□□□ 1.91
SHMT1-206ENST00000579558 ZNF484Q5JVG2 852 aa26.98■■□□□ 1.91
SHMT1-206ENST00000579558 TRMT1LQ7Z2T5 733 aaKnown RBP26.98■■□□□ 1.91
SHMT1-206ENST00000579558 ETNPPLQ8TBG4 499 aa26.98■■□□□ 1.91
SHMT1-206ENST00000579558 BBXQ8WY36 941 aaPredicted RBP26.98■■□□□ 1.91
SHMT1-206ENST00000579558 CDY2AQ9Y6F7 541 aa26.98■■□□□ 1.91
SHMT1-206ENST00000579558 MICAL3Q7RTP6 2002 aa26.98■■□□□ 1.91
SHMT1-206ENST00000579558 WDR81Q562E7 1941 aa26.98■■□□□ 1.91
SHMT1-206ENST00000579558 MMP1P03956 469 aa26.97■■□□□ 1.91
SHMT1-206ENST00000579558 CA3P07451 260 aa26.97■■□□□ 1.91
SHMT1-206ENST00000579558 GHRP10912 638 aa26.97■■□□□ 1.91
SHMT1-206ENST00000579558 FOSL2P15408 326 aa26.97■■□□□ 1.91
SHMT1-206ENST00000579558 KLRC1P26715 233 aa26.97■■□□□ 1.91
SHMT1-206ENST00000579558 EARS2Q5JPH6 523 aaKnown RBP26.97■■□□□ 1.91
SHMT1-206ENST00000579558 PPP4R3AQ6IN85 833 aa26.97■■□□□ 1.91
SHMT1-206ENST00000579558 TMCO2Q7Z6W1 182 aaPredicted RBP26.97■■□□□ 1.91
SHMT1-206ENST00000579558 NAP1L4Q99733 375 aaKnown RBP26.97■■□□□ 1.91
SHMT1-206ENST00000579558 ZBED2Q9BTP6 218 aa26.97■■□□□ 1.91
SHMT1-206ENST00000579558 IFIH1Q9BYX4 1025 aaKnown RBP26.97■■□□□ 1.91
SHMT1-206ENST00000579558 SH2B1Q9NRF2 756 aaPredicted RBP26.97■■□□□ 1.91
SHMT1-206ENST00000579558 SMIM35A0A1B0GVV1 85 aa26.96■■□□□ 1.91
SHMT1-206ENST00000579558 M0QZ92 97 aa26.96■■□□□ 1.91
SHMT1-206ENST00000579558 TLL1O43897 1013 aa26.96■■□□□ 1.91
SHMT1-206ENST00000579558 CCNT1O60563 726 aaKnown RBP26.96■■□□□ 1.91
SHMT1-206ENST00000579558 RABEP1Q15276 862 aa26.96■■□□□ 1.91
SHMT1-206ENST00000579558 IER5Q5VY09 327 aa26.96■■□□□ 1.91
SHMT1-206ENST00000579558 KRT40Q6A162 431 aa26.96■■□□□ 1.91
SHMT1-206ENST00000579558 LIN28BQ6ZN17 250 aaKnown RBP eCLIP26.96■■□□□ 1.91
SHMT1-206ENST00000579558 MIER3Q7Z3K6 550 aa26.96■■□□□ 1.91
SHMT1-206ENST00000579558 RDM1Q8NG50 284 aa26.96■■□□□ 1.91
SHMT1-206ENST00000579558 APBB2Q92870 758 aa26.96■■□□□ 1.91
SHMT1-206ENST00000579558 TNFRSF25Q93038 417 aa26.96■■□□□ 1.91
SHMT1-206ENST00000579558 FAM167AQ96KS9 214 aa26.96■■□□□ 1.91
SHMT1-206ENST00000579558 LLPHQ9BRT6 129 aaKnown RBP26.96■■□□□ 1.91
SHMT1-206ENST00000579558 PRDM12Q9H4Q4 367 aa26.96■■□□□ 1.91
SHMT1-206ENST00000579558 FAM205CA6NFA0 338 aa26.95■■□□□ 1.9
SHMT1-206ENST00000579558 AMHP03971 560 aa26.95■■□□□ 1.9
SHMT1-206ENST00000579558 MKRN4PQ13434 485 aaPredicted RBP26.95■■□□□ 1.9
SHMT1-206ENST00000579558 DIS3L2Q8IYB7 885 aaKnown RBP26.95■■□□□ 1.9
SHMT1-206ENST00000579558 SLC17A8Q8NDX2 589 aa26.95■■□□□ 1.9
SHMT1-206ENST00000579558 TRPV2Q9Y5S1 764 aa26.95■■□□□ 1.9
SHMT1-206ENST00000579558 ZBTB42B2RXF5 422 aa26.94■■□□□ 1.9
SHMT1-206ENST00000579558 TMEM62Q0P6H9 643 aa26.94■■□□□ 1.9
SHMT1-206ENST00000579558 LPIN1Q14693 890 aa26.94■■□□□ 1.9
SHMT1-206ENST00000579558 UGCGQ16739 394 aa26.94■■□□□ 1.9
SHMT1-206ENST00000579558 FBXO47Q5MNV8 452 aa26.94■■□□□ 1.9
SHMT1-206ENST00000579558 MYOCDQ8IZQ8 938 aa26.94■■□□□ 1.9
SHMT1-206ENST00000579558 FAM20AQ96MK3 541 aa26.94■■□□□ 1.9
SHMT1-206ENST00000579558 CEP131Q9UPN4 1083 aa26.94■■□□□ 1.9
SHMT1-206ENST00000579558 BTBD18B2RXH4 712 aa26.93■■□□□ 1.9
SHMT1-206ENST00000579558 ZNF862O60290 1169 aa26.93■■□□□ 1.9
SHMT1-206ENST00000579558 GJB5O95377 273 aa26.93■■□□□ 1.9
SHMT1-206ENST00000579558 OATP04181 439 aa26.93■■□□□ 1.9
SHMT1-206ENST00000579558 PRKCEQ02156 737 aa26.93■■□□□ 1.9
SHMT1-206ENST00000579558 FAM117BQ6P1L5 589 aa26.93■■□□□ 1.9
SHMT1-206ENST00000579558 B3GNT9Q6UX72 402 aa26.93■■□□□ 1.9
SHMT1-206ENST00000579558 NME8Q8N427 588 aa26.93■■□□□ 1.9
SHMT1-206ENST00000579558 GAS2L1Q99501 681 aaPredicted RBP26.93■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms