RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 GAP43P17677 238 aa11.08□□□□□ -0.64
VPS53-220ENST00000576149 TCP1P17987 556 aaKnown RBP11.08□□□□□ -0.64
VPS53-220ENST00000576149 CYP2C19P33261 490 aa11.08□□□□□ -0.64
VPS53-220ENST00000576149 SLC18A3Q16572 532 aa11.08□□□□□ -0.64
VPS53-220ENST00000576149 SPDYE2Q495Y8 402 aa11.08□□□□□ -0.64
VPS53-220ENST00000576149 CCDC174Q6PII3 467 aa11.08□□□□□ -0.64
VPS53-220ENST00000576149 ANKRD13CQ8N6S4 541 aa11.08□□□□□ -0.64
VPS53-220ENST00000576149 COG1Q8WTW3 980 aa11.08□□□□□ -0.64
VPS53-220ENST00000576149 NOX5Q96PH1 765 aa11.08□□□□□ -0.64
VPS53-220ENST00000576149 OSBPL9Q96SU4 736 aa11.08□□□□□ -0.64
VPS53-220ENST00000576149 VCPKMTQ9H867 229 aa11.08□□□□□ -0.64
VPS53-220ENST00000576149 PLCB1Q9NQ66 1216 aa11.08□□□□□ -0.64
VPS53-220ENST00000576149 HYOU1Q9Y4L1 999 aa11.08□□□□□ -0.64
VPS53-220ENST00000576149 TNS1Q9HBL0 1735 aaKnown RBP11.08□□□□□ -0.64
VPS53-220ENST00000576149 RGPD3A6NKT7 1758 aaPredicted RBP11.07□□□□□ -0.64
VPS53-220ENST00000576149 RGPD4Q7Z3J3 1758 aa11.07□□□□□ -0.64
VPS53-220ENST00000576149 TBC1D12O60347 775 aa11.07□□□□□ -0.64
VPS53-220ENST00000576149 RAD17O75943 681 aa11.07□□□□□ -0.64
VPS53-220ENST00000576149 AKAP3O75969 853 aa11.07□□□□□ -0.64
VPS53-220ENST00000576149 RAPGEF1Q13905 1077 aa11.07□□□□□ -0.64
VPS53-220ENST00000576149 CTTNQ14247 550 aaKnown RBP11.07□□□□□ -0.64
VPS53-220ENST00000576149 LRCH2Q5VUJ6 765 aa11.07□□□□□ -0.64
VPS53-220ENST00000576149 FKBP1CQ5VVH2 108 aa11.07□□□□□ -0.64
VPS53-220ENST00000576149 MMGT1Q8N4V1 131 aa11.07□□□□□ -0.64
VPS53-220ENST00000576149 OGFOD1Q8N543 542 aa11.07□□□□□ -0.64
VPS53-220ENST00000576149 PIGOQ8TEQ8 1089 aa11.07□□□□□ -0.64
VPS53-220ENST00000576149 DRC1Q96MC2 740 aa11.07□□□□□ -0.64
VPS53-220ENST00000576149 BCAS3Q9H6U6 928 aa11.07□□□□□ -0.64
VPS53-220ENST00000576149 LUC7LQ9NQ29 371 aaKnown RBP11.07□□□□□ -0.64
VPS53-220ENST00000576149 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.07□□□□□ -0.64
VPS53-220ENST00000576149 MRPL11Q9Y3B7 192 aaKnown RBP11.07□□□□□ -0.64
VPS53-220ENST00000576149 PSME4Q14997 1843 aa11.07□□□□□ -0.64
VPS53-220ENST00000576149 SLC16A3O15427 465 aaKnown RBP11.07□□□□□ -0.64
VPS53-220ENST00000576149 GCNT3O95395 438 aa11.07□□□□□ -0.64
VPS53-220ENST00000576149 NR3C1P04150 777 aa11.07□□□□□ -0.64
VPS53-220ENST00000576149 XRCC5P13010 732 aaKnown RBP11.07□□□□□ -0.64
VPS53-220ENST00000576149 RPL13P26373 211 aaKnown RBP11.07□□□□□ -0.64
VPS53-220ENST00000576149 ASIC2Q16515 512 aa11.07□□□□□ -0.64
VPS53-220ENST00000576149 KLHDC7AQ5VTJ3 777 aa11.07□□□□□ -0.64
VPS53-220ENST00000576149 SLC30A10Q6XR72 485 aa11.07□□□□□ -0.64
VPS53-220ENST00000576149 C1orf186Q6ZWK4 172 aa11.07□□□□□ -0.64
VPS53-220ENST00000576149 TPH2Q8IWU9 490 aa11.07□□□□□ -0.64
VPS53-220ENST00000576149 RTKN2Q8IZC4 609 aa11.07□□□□□ -0.64
VPS53-220ENST00000576149 FAM133AQ8N9E0 248 aa11.07□□□□□ -0.64
VPS53-220ENST00000576149 DYDC2Q96IM9 177 aa11.07□□□□□ -0.64
VPS53-220ENST00000576149 TLR10Q9BXR5 811 aa11.07□□□□□ -0.64
VPS53-220ENST00000576149 METTL14Q9HCE5 456 aaKnown RBP11.07□□□□□ -0.64
VPS53-220ENST00000576149 A0A087X0T9 212 aa11.06□□□□□ -0.64
VPS53-220ENST00000576149 LRRIQ3A6PVS8 624 aaPredicted RBP11.06□□□□□ -0.64
VPS53-220ENST00000576149 EIF3DO15371 548 aaKnown RBP eCLIP11.06□□□□□ -0.64
VPS53-220ENST00000576149 BUB1O43683 1085 aa11.06□□□□□ -0.64
VPS53-220ENST00000576149 FAM228BP0C875 321 aa11.06□□□□□ -0.64
VPS53-220ENST00000576149 ACTN1P12814 892 aa11.06□□□□□ -0.64
VPS53-220ENST00000576149 SLC9A1P19634 815 aa11.06□□□□□ -0.64
VPS53-220ENST00000576149 MUTP22033 750 aa11.06□□□□□ -0.64
VPS53-220ENST00000576149 PON1P27169 355 aa11.06□□□□□ -0.64
VPS53-220ENST00000576149 POLD1P28340 1107 aa11.06□□□□□ -0.64
VPS53-220ENST00000576149 C2orf54Q08AI8 447 aa11.06□□□□□ -0.64
VPS53-220ENST00000576149 KLHL30Q0D2K2 578 aa11.06□□□□□ -0.64
VPS53-220ENST00000576149 NAB2Q15742 525 aa11.06□□□□□ -0.64
VPS53-220ENST00000576149 EXOC3L4Q17RC7 722 aa11.06□□□□□ -0.64
VPS53-220ENST00000576149 MAP9Q49MG5 647 aa11.06□□□□□ -0.64
VPS53-220ENST00000576149 CEP55Q53EZ4 464 aa11.06□□□□□ -0.64
VPS53-220ENST00000576149 NFRKBQ6P4R8 1299 aa11.06□□□□□ -0.64
VPS53-220ENST00000576149 FAM160B2Q86V87 743 aa11.06□□□□□ -0.64
VPS53-220ENST00000576149 TTLL6Q8N841 843 aa11.06□□□□□ -0.64
VPS53-220ENST00000576149 SPATA4Q8NEY3 305 aa11.06□□□□□ -0.64
VPS53-220ENST00000576149 EHMT1Q9H9B1 1298 aa11.06□□□□□ -0.64
VPS53-220ENST00000576149 VIPAS39Q9H9C1 493 aa11.06□□□□□ -0.64
VPS53-220ENST00000576149 POLD4Q9HCU8 107 aa11.06□□□□□ -0.64
VPS53-220ENST00000576149 ZBTB12Q9Y330 459 aaPredicted RBP11.06□□□□□ -0.64
VPS53-220ENST00000576149 SMCHD1A6NHR9 2005 aa11.06□□□□□ -0.64
VPS53-220ENST00000576149 SFI1A8K8P3 1242 aa11.06□□□□□ -0.64
VPS53-220ENST00000576149 TGFB1I1O43294 461 aa11.06□□□□□ -0.64
VPS53-220ENST00000576149 CHMP2AO43633 222 aa11.06□□□□□ -0.64
VPS53-220ENST00000576149 GAS7O60861 476 aa11.06□□□□□ -0.64
VPS53-220ENST00000576149 EPB41P11171 864 aaKnown RBP11.06□□□□□ -0.64
VPS53-220ENST00000576149 UCHL3P15374 230 aa11.06□□□□□ -0.64
VPS53-220ENST00000576149 CASP4P49662 377 aa11.06□□□□□ -0.64
VPS53-220ENST00000576149 PRELPP51888 382 aa11.06□□□□□ -0.64
VPS53-220ENST00000576149 ARID5AQ03989 594 aa11.06□□□□□ -0.64
VPS53-220ENST00000576149 KCNA1Q09470 495 aa11.06□□□□□ -0.64
VPS53-220ENST00000576149 EPHA7Q15375 998 aa11.06□□□□□ -0.64
VPS53-220ENST00000576149 IRF2BP2Q7Z5L9 587 aa11.06□□□□□ -0.64
VPS53-220ENST00000576149 CDAN1Q8IWY9 1227 aa11.06□□□□□ -0.64
VPS53-220ENST00000576149 LARGE2Q8N3Y3 721 aa11.06□□□□□ -0.64
VPS53-220ENST00000576149 TMEM39BQ9GZU3 492 aa11.06□□□□□ -0.64
VPS53-220ENST00000576149 STK32BQ9NY57 414 aa11.06□□□□□ -0.64
VPS53-220ENST00000576149 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.06□□□□□ -0.64
VPS53-220ENST00000576149 ADAMTS1Q9UHI8 967 aa11.06□□□□□ -0.64
VPS53-220ENST00000576149 TSKSQ9UJT2 592 aa11.06□□□□□ -0.64
VPS53-220ENST00000576149 ZBTB39O15060 712 aa11.05□□□□□ -0.64
VPS53-220ENST00000576149 NCK2O43639 380 aa11.05□□□□□ -0.64
VPS53-220ENST00000576149 FAM13AO94988 1023 aa11.05□□□□□ -0.64
VPS53-220ENST00000576149 RXRBP28702 533 aa11.05□□□□□ -0.64
VPS53-220ENST00000576149 CAP2P40123 477 aa11.05□□□□□ -0.64
VPS53-220ENST00000576149 UBXN2AP68543 259 aa11.05□□□□□ -0.64
VPS53-220ENST00000576149 EZH2Q15910 746 aaKnown RBP11.05□□□□□ -0.64
VPS53-220ENST00000576149 NFIL3Q16649 462 aa11.05□□□□□ -0.64
VPS53-220ENST00000576149 CCDC70Q6NSX1 233 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms