RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 SNX29Q8TEQ0 813 aa9.61□□□□□ -0.87
NUP88-211ENST00000575976 LEO1Q8WVC0 666 aaPredicted RBP9.61□□□□□ -0.87
NUP88-211ENST00000575976 ATP6V0A1Q93050 837 aa9.61□□□□□ -0.87
NUP88-211ENST00000575976 SPATA32Q96LK8 384 aa9.61□□□□□ -0.87
NUP88-211ENST00000575976 HSD17B14Q9BPX1 270 aa9.61□□□□□ -0.87
NUP88-211ENST00000575976 MMTAG2Q9BU76 263 aaKnown RBP9.61□□□□□ -0.87
NUP88-211ENST00000575976 KATNAL1Q9BW62 490 aa9.61□□□□□ -0.87
NUP88-211ENST00000575976 GDPD2Q9HCC8 539 aa9.61□□□□□ -0.87
NUP88-211ENST00000575976 ZNF215Q9UL58 517 aaPredicted RBP9.61□□□□□ -0.87
NUP88-211ENST00000575976 MYH15Q9Y2K3 1946 aa9.6□□□□□ -0.87
NUP88-211ENST00000575976 A0A087WWV3 80 aa9.6□□□□□ -0.87
NUP88-211ENST00000575976 A0A0U1RQG5 324 aaPredicted RBP9.6□□□□□ -0.87
NUP88-211ENST00000575976 POTEB3A0JP26 581 aa9.6□□□□□ -0.87
NUP88-211ENST00000575976 ARVCFO00192 962 aa9.6□□□□□ -0.87
NUP88-211ENST00000575976 DKC1O60832 514 aaKnown RBP eCLIP9.6□□□□□ -0.87
NUP88-211ENST00000575976 CUTAO60888 179 aa9.6□□□□□ -0.87
NUP88-211ENST00000575976 OATP04181 439 aa9.6□□□□□ -0.87
NUP88-211ENST00000575976 RPA1P27694 616 aa9.6□□□□□ -0.87
NUP88-211ENST00000575976 LONP1P36776 959 aaKnown RBP9.6□□□□□ -0.87
NUP88-211ENST00000575976 CCT6AP40227 531 aaKnown RBP9.6□□□□□ -0.87
NUP88-211ENST00000575976 SLC26A2P50443 739 aa9.6□□□□□ -0.87
NUP88-211ENST00000575976 CDK7P50613 346 aa9.6□□□□□ -0.87
NUP88-211ENST00000575976 PRKCEQ02156 737 aa9.6□□□□□ -0.87
NUP88-211ENST00000575976 HIC1Q14526 733 aa9.6□□□□□ -0.87
NUP88-211ENST00000575976 ECM1Q16610 540 aa9.6□□□□□ -0.87
NUP88-211ENST00000575976 FAM47CQ5HY64 1035 aa9.6□□□□□ -0.87
NUP88-211ENST00000575976 KRT79Q5XKE5 535 aa9.6□□□□□ -0.87
NUP88-211ENST00000575976 POTEBQ6S5H4 581 aa9.6□□□□□ -0.87
NUP88-211ENST00000575976 USP49Q70CQ1 688 aa9.6□□□□□ -0.87
NUP88-211ENST00000575976 CABP7Q86V35 215 aa9.6□□□□□ -0.87
NUP88-211ENST00000575976 C4orf19Q8IY42 314 aa9.6□□□□□ -0.87
NUP88-211ENST00000575976 CKAP2LQ8IYA6 745 aa9.6□□□□□ -0.87
NUP88-211ENST00000575976 SLC43A3Q8NBI5 491 aa9.6□□□□□ -0.87
NUP88-211ENST00000575976 ATP8B4Q8TF62 1192 aa9.6□□□□□ -0.87
NUP88-211ENST00000575976 EPSTI1Q96J88 318 aa9.6□□□□□ -0.87
NUP88-211ENST00000575976 AK8Q96MA6 479 aa9.6□□□□□ -0.87
NUP88-211ENST00000575976 LXNQ9BS40 222 aa9.6□□□□□ -0.87
NUP88-211ENST00000575976 POLR3CQ9BUI4 534 aaPredicted RBP9.6□□□□□ -0.87
NUP88-211ENST00000575976 ZSWIM4Q9H7M6 989 aa9.6□□□□□ -0.87
NUP88-211ENST00000575976 TUFT1Q9NNX1 390 aa9.6□□□□□ -0.87
NUP88-211ENST00000575976 HDAC6Q9UBN7 1215 aa9.6□□□□□ -0.87
NUP88-211ENST00000575976 PCDHA7Q9UN72 937 aa9.6□□□□□ -0.87
NUP88-211ENST00000575976 STK24Q9Y6E0 443 aa9.6□□□□□ -0.87
NUP88-211ENST00000575976 TMEM150BA6NC51 233 aa9.59□□□□□ -0.87
NUP88-211ENST00000575976 DDX11L8A8MPP1 907 aa9.59□□□□□ -0.87
NUP88-211ENST00000575976 ZBTB39O15060 712 aa9.59□□□□□ -0.87
NUP88-211ENST00000575976 HBP1O60381 514 aa9.59□□□□□ -0.87
NUP88-211ENST00000575976 LYPLA2O95372 231 aa9.59□□□□□ -0.87
NUP88-211ENST00000575976 SMIM10L2AP0DMW4 78 aa9.59□□□□□ -0.87
NUP88-211ENST00000575976 SMIM10L2BP0DMW5 78 aa9.59□□□□□ -0.87
NUP88-211ENST00000575976 INSRRP14616 1297 aa9.59□□□□□ -0.87
NUP88-211ENST00000575976 UBA7P41226 1012 aa9.59□□□□□ -0.87
NUP88-211ENST00000575976 ME1P48163 572 aa9.59□□□□□ -0.87
NUP88-211ENST00000575976 ZNF200P98182 395 aaPredicted RBP9.59□□□□□ -0.87
NUP88-211ENST00000575976 GRB10Q13322 594 aa9.59□□□□□ -0.87
NUP88-211ENST00000575976 LRRC26Q2I0M4 334 aa9.59□□□□□ -0.87
NUP88-211ENST00000575976 XKR3Q5GH77 459 aa9.59□□□□□ -0.87
NUP88-211ENST00000575976 AXDND1Q5T1B0 1012 aaPredicted RBP9.59□□□□□ -0.87
NUP88-211ENST00000575976 HAUS3Q68CZ6 603 aa9.59□□□□□ -0.87
NUP88-211ENST00000575976 GDF6Q6KF10 455 aaPredicted RBP9.59□□□□□ -0.87
NUP88-211ENST00000575976 NFRKBQ6P4R8 1299 aa9.59□□□□□ -0.87
NUP88-211ENST00000575976 POTEGQ6S5H5 508 aa9.59□□□□□ -0.87
NUP88-211ENST00000575976 SHC4Q6S5L8 630 aa9.59□□□□□ -0.87
NUP88-211ENST00000575976 SESTD1Q86VW0 696 aa9.59□□□□□ -0.87
NUP88-211ENST00000575976 C7orf31Q8N865 590 aa9.59□□□□□ -0.87
NUP88-211ENST00000575976 BBXQ8WY36 941 aaPredicted RBP9.59□□□□□ -0.87
NUP88-211ENST00000575976 SYMPKQ92797 1274 aaKnown RBP9.59□□□□□ -0.87
NUP88-211ENST00000575976 PNMA5Q96PV4 448 aa9.59□□□□□ -0.87
NUP88-211ENST00000575976 PLIN2Q99541 437 aa9.59□□□□□ -0.87
NUP88-211ENST00000575976 SH2D3AQ9BRG2 576 aa9.59□□□□□ -0.87
NUP88-211ENST00000575976 CCSER1Q9C0I3 900 aa9.59□□□□□ -0.87
NUP88-211ENST00000575976 SCAND2PQ9GZW5 306 aaPredicted RBP9.59□□□□□ -0.87
NUP88-211ENST00000575976 NRBP2Q9NSY0 501 aa9.59□□□□□ -0.87
NUP88-211ENST00000575976 SETD4Q9NVD3 440 aa9.59□□□□□ -0.87
NUP88-211ENST00000575976 GTF2IRD1Q9UHL9 959 aa9.59□□□□□ -0.87
NUP88-211ENST00000575976 TRPC6Q9Y210 931 aa9.59□□□□□ -0.87
NUP88-211ENST00000575976 SCN10AQ9Y5Y9 1956 aa9.58□□□□□ -0.88
NUP88-211ENST00000575976 C17orf102A2RUQ5 167 aa9.58□□□□□ -0.88
NUP88-211ENST00000575976 MUTP22033 750 aa9.58□□□□□ -0.88
NUP88-211ENST00000575976 YWHABP31946 246 aaKnown RBP9.58□□□□□ -0.88
NUP88-211ENST00000575976 RTP1P59025 263 aa9.58□□□□□ -0.88
NUP88-211ENST00000575976 IGBP1P78318 339 aa9.58□□□□□ -0.88
NUP88-211ENST00000575976 ADAM17P78536 824 aa9.58□□□□□ -0.88
NUP88-211ENST00000575976 PTPN11Q06124 597 aaPredicted RBP9.58□□□□□ -0.88
NUP88-211ENST00000575976 PPFIA1Q13136 1202 aa9.58□□□□□ -0.88
NUP88-211ENST00000575976 SNX17Q15036 470 aa9.58□□□□□ -0.88
NUP88-211ENST00000575976 KARSQ15046 597 aaKnown RBP9.58□□□□□ -0.88
NUP88-211ENST00000575976 ZRSR1Q15695 479 aaKnown RBP9.58□□□□□ -0.88
NUP88-211ENST00000575976 GRIK4Q16099 956 aa9.58□□□□□ -0.88
NUP88-211ENST00000575976 TRIM60Q495X7 471 aa9.58□□□□□ -0.88
NUP88-211ENST00000575976 HYIQ5T013 277 aa9.58□□□□□ -0.88
NUP88-211ENST00000575976 C1orf53Q5VUE5 145 aa9.58□□□□□ -0.88
NUP88-211ENST00000575976 PLA2G4FQ68DD2 849 aa9.58□□□□□ -0.88
NUP88-211ENST00000575976 GPR153Q6NV75 609 aa9.58□□□□□ -0.88
NUP88-211ENST00000575976 ANO5Q75V66 913 aa9.58□□□□□ -0.88
NUP88-211ENST00000575976 FAM126BQ8IXS8 530 aa9.58□□□□□ -0.88
NUP88-211ENST00000575976 ZNF579Q8NAF0 562 aaKnown RBP9.58□□□□□ -0.88
NUP88-211ENST00000575976 PIGOQ8TEQ8 1089 aa9.58□□□□□ -0.88
NUP88-211ENST00000575976 TRAPPC12Q8WVT3 735 aa9.58□□□□□ -0.88
NUP88-211ENST00000575976 ZBTB10Q96DT7 871 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms