RNA–Protein interactions for RNA: ENST00000575431.1

CCDC40-214, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-214ENST00000575431 MUTP22033 750 aa10.73□□□□□ -0.69
CCDC40-214ENST00000575431 RFC2P35250 354 aa10.73□□□□□ -0.69
CCDC40-214ENST00000575431 ANP32AP39687 249 aaKnown RBP10.73□□□□□ -0.69
CCDC40-214ENST00000575431 TECP42680 631 aa10.73□□□□□ -0.69
CCDC40-214ENST00000575431 ATL3Q6DD88 541 aa10.73□□□□□ -0.69
CCDC40-214ENST00000575431 MFSD5Q6N075 450 aa10.73□□□□□ -0.69
CCDC40-214ENST00000575431 OTUD6AQ7L8S5 288 aa10.73□□□□□ -0.69
CCDC40-214ENST00000575431 RPAINQ86UA6 219 aa10.73□□□□□ -0.69
CCDC40-214ENST00000575431 RSPH3Q86UC2 560 aa10.73□□□□□ -0.69
CCDC40-214ENST00000575431 EXOC8Q8IYI6 725 aa10.73□□□□□ -0.69
CCDC40-214ENST00000575431 ZNF710Q8N1W2 664 aa10.73□□□□□ -0.69
CCDC40-214ENST00000575431 KCTD17Q8N5Z5 321 aa10.73□□□□□ -0.69
CCDC40-214ENST00000575431 TRIM43Q96BQ3 446 aaPredicted RBP10.73□□□□□ -0.69
CCDC40-214ENST00000575431 ZNF396Q96N95 335 aaPredicted RBP10.73□□□□□ -0.69
CCDC40-214ENST00000575431 JPH2Q9BR39 696 aaPredicted RBP10.73□□□□□ -0.69
CCDC40-214ENST00000575431 NOC4LQ9BVI4 516 aaKnown RBP10.73□□□□□ -0.69
CCDC40-214ENST00000575431 NIFKQ9BYG3 293 aaKnown RBP10.73□□□□□ -0.69
CCDC40-214ENST00000575431 TUFT1Q9NNX1 390 aa10.73□□□□□ -0.69
CCDC40-214ENST00000575431 TUBE1Q9UJT0 475 aa10.73□□□□□ -0.69
CCDC40-214ENST00000575431 PCDHA2Q9Y5H9 948 aa10.73□□□□□ -0.69
CCDC40-214ENST00000575431 WDR81Q562E7 1941 aa10.73□□□□□ -0.69
CCDC40-214ENST00000575431 TREHO43280 583 aa10.72□□□□□ -0.69
CCDC40-214ENST00000575431 ZNF862O60290 1169 aa10.72□□□□□ -0.69
CCDC40-214ENST00000575431 SLITRK3O94933 977 aa10.72□□□□□ -0.69
CCDC40-214ENST00000575431 F13A1P00488 732 aa10.72□□□□□ -0.69
CCDC40-214ENST00000575431 CYP2C9P11712 490 aa10.72□□□□□ -0.69
CCDC40-214ENST00000575431 SYN1P17600 705 aa10.72□□□□□ -0.69
CCDC40-214ENST00000575431 ATP4AP20648 1035 aa10.72□□□□□ -0.69
CCDC40-214ENST00000575431 BMP8BP34820 402 aa10.72□□□□□ -0.69
CCDC40-214ENST00000575431 PRKCEQ02156 737 aa10.72□□□□□ -0.69
CCDC40-214ENST00000575431 PPIGQ13427 754 aaKnown RBP eCLIP10.72□□□□□ -0.69
CCDC40-214ENST00000575431 NBR1Q14596 966 aa10.72□□□□□ -0.69
CCDC40-214ENST00000575431 SF3A1Q15459 793 aaKnown RBP10.72□□□□□ -0.69
CCDC40-214ENST00000575431 FAM43BQ6ZT52 329 aaPredicted RBP10.72□□□□□ -0.69
CCDC40-214ENST00000575431 SH3RF1Q7Z6J0 888 aa10.72□□□□□ -0.69
CCDC40-214ENST00000575431 RPUSD2Q8IZ73 545 aaKnown RBP10.72□□□□□ -0.69
CCDC40-214ENST00000575431 NME8Q8N427 588 aa10.72□□□□□ -0.69
CCDC40-214ENST00000575431 IGSF22Q8N9C0 903 aa10.72□□□□□ -0.69
CCDC40-214ENST00000575431 SPRYD3Q8NCJ5 442 aa10.72□□□□□ -0.69
CCDC40-214ENST00000575431 AK8Q96MA6 479 aa10.72□□□□□ -0.69
CCDC40-214ENST00000575431 CTAGE1Q96RT6 745 aa10.72□□□□□ -0.69
CCDC40-214ENST00000575431 HSD17B14Q9BPX1 270 aa10.72□□□□□ -0.69
CCDC40-214ENST00000575431 EIF2AK1Q9BQI3 630 aaKnown RBP10.72□□□□□ -0.69
CCDC40-214ENST00000575431 POLR3CQ9BUI4 534 aaPredicted RBP10.72□□□□□ -0.69
CCDC40-214ENST00000575431 LRWD1Q9UFC0 647 aa10.72□□□□□ -0.69
CCDC40-214ENST00000575431 ATP6V1DQ9Y5K8 247 aa10.72□□□□□ -0.69
CCDC40-214ENST00000575431 MORC2Q9Y6X9 1032 aaPredicted RBP10.72□□□□□ -0.69
CCDC40-214ENST00000575431 CENPFP49454 3210 aa10.72□□□□□ -0.69
CCDC40-214ENST00000575431 SMIM35A0A1B0GVV1 85 aa10.71□□□□□ -0.69
CCDC40-214ENST00000575431 POTEMA6NI47 508 aa10.71□□□□□ -0.69
CCDC40-214ENST00000575431 SLC26A4O43511 780 aa10.71□□□□□ -0.69
CCDC40-214ENST00000575431 PFKMP08237 780 aa10.71□□□□□ -0.69
CCDC40-214ENST00000575431 SELPP16109 830 aa10.71□□□□□ -0.69
CCDC40-214ENST00000575431 KLRC1P26715 233 aa10.71□□□□□ -0.69
CCDC40-214ENST00000575431 RPA1P27694 616 aa10.71□□□□□ -0.69
CCDC40-214ENST00000575431 TMOD1P28289 359 aa10.71□□□□□ -0.69
CCDC40-214ENST00000575431 IGBP1P78318 339 aa10.71□□□□□ -0.69
CCDC40-214ENST00000575431 NUCB2P80303 420 aa10.71□□□□□ -0.69
CCDC40-214ENST00000575431 FPGSQ05932 587 aa10.71□□□□□ -0.69
CCDC40-214ENST00000575431 MARCH8Q5T0T0 291 aa10.71□□□□□ -0.69
CCDC40-214ENST00000575431 KRT79Q5XKE5 535 aa10.71□□□□□ -0.69
CCDC40-214ENST00000575431 MTHFD1LQ6UB35 978 aa10.71□□□□□ -0.69
CCDC40-214ENST00000575431 LRRC8DQ7L1W4 858 aa10.71□□□□□ -0.69
CCDC40-214ENST00000575431 BANK1Q8NDB2 785 aa10.71□□□□□ -0.69
CCDC40-214ENST00000575431 NACC1Q96RE7 527 aa10.71□□□□□ -0.69
CCDC40-214ENST00000575431 GDF15Q99988 308 aa10.71□□□□□ -0.69
CCDC40-214ENST00000575431 LXNQ9BS40 222 aa10.71□□□□□ -0.69
CCDC40-214ENST00000575431 PPP1R12CQ9BZL4 782 aa10.71□□□□□ -0.69
CCDC40-214ENST00000575431 ANKEF1Q9NU02 776 aa10.71□□□□□ -0.69
CCDC40-214ENST00000575431 SEPT9Q9UHD8 586 aaPredicted RBP10.71□□□□□ -0.69
CCDC40-214ENST00000575431 CFAP45Q9UL16 551 aa10.71□□□□□ -0.69
CCDC40-214ENST00000575431 LTBP2Q14767 1821 aa10.7□□□□□ -0.7
CCDC40-214ENST00000575431 A0A1W2PPC1 479 aa10.7□□□□□ -0.7
CCDC40-214ENST00000575431 DDX11L8A8MPP1 907 aa10.7□□□□□ -0.7
CCDC40-214ENST00000575431 M0QZ92 97 aa10.7□□□□□ -0.7
CCDC40-214ENST00000575431 STBD1O95210 358 aa10.7□□□□□ -0.7
CCDC40-214ENST00000575431 IQCF3P0C7M6 154 aa10.7□□□□□ -0.7
CCDC40-214ENST00000575431 CKBP12277 381 aa10.7□□□□□ -0.7
CCDC40-214ENST00000575431 YWHABP31946 246 aaKnown RBP10.7□□□□□ -0.7
CCDC40-214ENST00000575431 RFC5P40937 340 aa10.7□□□□□ -0.7
CCDC40-214ENST00000575431 MAGEA10P43363 369 aaPredicted RBP10.7□□□□□ -0.7
CCDC40-214ENST00000575431 ZNF200P98182 395 aaPredicted RBP10.7□□□□□ -0.7
CCDC40-214ENST00000575431 CDC42EP1Q00587 391 aa10.7□□□□□ -0.7
CCDC40-214ENST00000575431 TBC1D8BQ0IIM8 1120 aa10.7□□□□□ -0.7
CCDC40-214ENST00000575431 HIC1Q14526 733 aa10.7□□□□□ -0.7
CCDC40-214ENST00000575431 TARBP2Q15633 366 aaKnown RBP10.7□□□□□ -0.7
CCDC40-214ENST00000575431 UGCGQ16739 394 aa10.7□□□□□ -0.7
CCDC40-214ENST00000575431 FAM26DQ5JW98 314 aa10.7□□□□□ -0.7
CCDC40-214ENST00000575431 IER5Q5VY09 327 aa10.7□□□□□ -0.7
CCDC40-214ENST00000575431 ANO5Q75V66 913 aa10.7□□□□□ -0.7
CCDC40-214ENST00000575431 TPH2Q8IWU9 490 aa10.7□□□□□ -0.7
CCDC40-214ENST00000575431 PPP1R13LQ8WUF5 828 aa10.7□□□□□ -0.7
CCDC40-214ENST00000575431 BADQ92934 168 aa10.7□□□□□ -0.7
CCDC40-214ENST00000575431 DYDC2Q96IM9 177 aa10.7□□□□□ -0.7
CCDC40-214ENST00000575431 RGL1Q9NZL6 768 aa10.7□□□□□ -0.7
CCDC40-214ENST00000575431 SQORQ9Y6N5 450 aa10.7□□□□□ -0.7
CCDC40-214ENST00000575431 KDM3AQ9Y4C1 1321 aa10.69□□□□□ -0.7
CCDC40-214ENST00000575431 VWA3AA6NCI4 1184 aa10.69□□□□□ -0.7
CCDC40-214ENST00000575431 RSPH10B2B2RC85 870 aa10.69□□□□□ -0.7
CCDC40-214ENST00000575431 ZBTB42B2RXF5 422 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 140.4 ms