RNA–Protein interactions for RNA: ENST00000574022.1

CHD3-217, Transcript of chromodomain helicase DNA binding protein 3, human

TSL 2

Gene CHD3, Length 103 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD3-217	ENST00000574022	CLASP2	O75122	1294 aa	Known RBP	2.55	□□□□□ -2
CHD3-217	ENST00000574022	DGKI	O75912	1065 aa		2.55	□□□□□ -2
CHD3-217	ENST00000574022	CLEC2L	P0C7M8	214 aa		2.55	□□□□□ -2
CHD3-217	ENST00000574022	FAM87A	P0C7U9	286 aa		2.55	□□□□□ -2
CHD3-217	ENST00000574022	SRF	P11831	508 aa		2.55	□□□□□ -2
CHD3-217	ENST00000574022	BMP3	P12645	472 aa		2.55	□□□□□ -2
CHD3-217	ENST00000574022	MTHFD2	P13995	350 aa		2.55	□□□□□ -2
CHD3-217	ENST00000574022	ELN	P15502	786 aa		2.55	□□□□□ -2
CHD3-217	ENST00000574022	GLB1	P16278	677 aa		2.55	□□□□□ -2
CHD3-217	ENST00000574022	ENDOU	P21128	410 aa	Known RBP	2.55	□□□□□ -2
CHD3-217	ENST00000574022	PEX2	P28328	305 aa		2.55	□□□□□ -2
CHD3-217	ENST00000574022	CASP2	P42575	452 aa		2.55	□□□□□ -2
CHD3-217	ENST00000574022	FXR1	P51114	621 aa	Known RBP eCLIP	2.55	□□□□□ -2
CHD3-217	ENST00000574022	SLC5A3	P53794	718 aa		2.55	□□□□□ -2
CHD3-217	ENST00000574022	SLC16A1	P53985	500 aa		2.55	□□□□□ -2
CHD3-217	ENST00000574022	MRPS9	P82933	396 aa	Known RBP	2.55	□□□□□ -2
CHD3-217	ENST00000574022	EPHA7	Q15375	998 aa		2.55	□□□□□ -2
CHD3-217	ENST00000574022	PUM3	Q15397	648 aa	Known RBP	2.55	□□□□□ -2
CHD3-217	ENST00000574022	NFKBIB	Q15653	356 aa		2.55	□□□□□ -2
CHD3-217	ENST00000574022	CPEB4	Q17RY0	729 aa	Known RBP eCLIP	2.55	□□□□□ -2
CHD3-217	ENST00000574022	PGS1	Q32NB8	556 aa		2.55	□□□□□ -2
CHD3-217	ENST00000574022	PRR16	Q569H4	304 aa		2.55	□□□□□ -2
CHD3-217	ENST00000574022	L1TD1	Q5T7N2	865 aa	Known RBP	2.55	□□□□□ -2
CHD3-217	ENST00000574022	CPZ	Q66K79	652 aa		2.55	□□□□□ -2
CHD3-217	ENST00000574022	ESRP1	Q6NXG1	681 aa	Known RBP	2.55	□□□□□ -2
CHD3-217	ENST00000574022	CC2D1A	Q6P1N0	951 aa	Predicted RBP	2.55	□□□□□ -2
CHD3-217	ENST00000574022	CCDC62	Q6P9F0	684 aa		2.55	□□□□□ -2
CHD3-217	ENST00000574022	NPNT	Q6UXI9	565 aa		2.55	□□□□□ -2
CHD3-217	ENST00000574022	LDHAL6A	Q6ZMR3	332 aa		2.55	□□□□□ -2
CHD3-217	ENST00000574022	ESPNL	Q6ZVH7	1005 aa		2.55	□□□□□ -2
CHD3-217	ENST00000574022	FAM214B	Q7L5A3	538 aa		2.55	□□□□□ -2
CHD3-217	ENST00000574022	OTOP3	Q7RTS5	596 aa		2.55	□□□□□ -2
CHD3-217	ENST00000574022	KCNK18	Q7Z418	384 aa		2.55	□□□□□ -2
CHD3-217	ENST00000574022	SAPCD2	Q86UD0	394 aa		2.55	□□□□□ -2
CHD3-217	ENST00000574022	TSPYL5	Q86VY4	417 aa	Predicted RBP	2.55	□□□□□ -2
CHD3-217	ENST00000574022	NME9	Q86XW9	330 aa		2.55	□□□□□ -2
CHD3-217	ENST00000574022	NOSTRIN	Q8IVI9	506 aa		2.55	□□□□□ -2
CHD3-217	ENST00000574022	SLC41A1	Q8IVJ1	513 aa		2.55	□□□□□ -2
CHD3-217	ENST00000574022	NPAS3	Q8IXF0	933 aa		2.55	□□□□□ -2
CHD3-217	ENST00000574022	KIAA0319L	Q8IZA0	1049 aa		2.55	□□□□□ -2
CHD3-217	ENST00000574022	NLGN4X	Q8N0W4	816 aa		2.55	□□□□□ -2
CHD3-217	ENST00000574022	KRT78	Q8N1N4	520 aa		2.55	□□□□□ -2
CHD3-217	ENST00000574022	MFSD4A	Q8N468	514 aa		2.55	□□□□□ -2
CHD3-217	ENST00000574022	PRR18	Q8N4B5	295 aa		2.55	□□□□□ -2
CHD3-217	ENST00000574022	DPF3	Q92784	378 aa		2.55	□□□□□ -2
CHD3-217	ENST00000574022	DLG3	Q92796	817 aa		2.55	□□□□□ -2
CHD3-217	ENST00000574022	RAX2	Q96IS3	184 aa		2.55	□□□□□ -2
CHD3-217	ENST00000574022	RIPOR3	Q96MK2	946 aa		2.55	□□□□□ -2
CHD3-217	ENST00000574022	PLVAP	Q9BX97	442 aa		2.55	□□□□□ -2
CHD3-217	ENST00000574022	B3GNT5	Q9BYG0	378 aa		2.55	□□□□□ -2
CHD3-217	ENST00000574022	FOXP3	Q9BZS1	431 aa		2.55	□□□□□ -2
CHD3-217	ENST00000574022	WDR12	Q9GZL7	423 aa	Known RBP	2.55	□□□□□ -2
CHD3-217	ENST00000574022	DUSP15	Q9H1R2	295 aa	Predicted RBP	2.55	□□□□□ -2
CHD3-217	ENST00000574022	RSAD1	Q9HA92	442 aa		2.55	□□□□□ -2
CHD3-217	ENST00000574022	KCNH7	Q9NS40	1196 aa		2.55	□□□□□ -2
CHD3-217	ENST00000574022	SERPINB13	Q9UIV8	391 aa		2.55	□□□□□ -2
CHD3-217	ENST00000574022	TUBD1	Q9UJT1	453 aa		2.55	□□□□□ -2
CHD3-217	ENST00000574022	DSE	Q9UL01	958 aa		2.55	□□□□□ -2
CHD3-217	ENST00000574022	TCFL5	Q9UL49	500 aa		2.55	□□□□□ -2
CHD3-217	ENST00000574022	PCDHGB3	Q9Y5G1	929 aa		2.55	□□□□□ -2
CHD3-217	ENST00000574022	ATP23	Q9Y6H3	246 aa		2.55	□□□□□ -2
CHD3-217	ENST00000574022	CAPN6	Q9Y6Q1	641 aa		2.55	□□□□□ -2
CHD3-217	ENST00000574022	RPS6KL1	Q9Y6S9	549 aa		2.55	□□□□□ -2
CHD3-217	ENST00000574022	PRSS38	A1L453	326 aa		2.54	□□□□□ -2
CHD3-217	ENST00000574022	CFAP69	A5D8W1	941 aa		2.54	□□□□□ -2
CHD3-217	ENST00000574022	LRRC10B	A6NIK2	292 aa		2.54	□□□□□ -2
CHD3-217	ENST00000574022	RHPN2P1	A8MT19	583 aa		2.54	□□□□□ -2
CHD3-217	ENST00000574022	GNAT3	A8MTJ3	354 aa		2.54	□□□□□ -2
CHD3-217	ENST00000574022	C22orf46	C9J442	243 aa		2.54	□□□□□ -2
CHD3-217	ENST00000574022	FAM229A	H3BQW9	127 aa		2.54	□□□□□ -2
CHD3-217	ENST00000574022	IGF2BP3	O00425	579 aa	Known RBP eCLIP	2.54	□□□□□ -2
CHD3-217	ENST00000574022	KRIT1	O00522	736 aa		2.54	□□□□□ -2
CHD3-217	ENST00000574022	TLR5	O60602	858 aa		2.54	□□□□□ -2
CHD3-217	ENST00000574022	FUCA1	P04066	466 aa		2.54	□□□□□ -2
CHD3-217	ENST00000574022	ALDH2	P05091	517 aa		2.54	□□□□□ -2
CHD3-217	ENST00000574022	LDHC	P07864	332 aa		2.54	□□□□□ -2
CHD3-217	ENST00000574022	TMEM253	P0C7T8	217 aa		2.54	□□□□□ -2
CHD3-217	ENST00000574022	ZNF865	P0CJ78	1059 aa	Predicted RBP	2.54	□□□□□ -2
CHD3-217	ENST00000574022	HSD3B1	P14060	373 aa		2.54	□□□□□ -2
CHD3-217	ENST00000574022	MAP4	P27816	1152 aa	Known RBP	2.54	□□□□□ -2
CHD3-217	ENST00000574022	HTR1B	P28222	390 aa		2.54	□□□□□ -2
CHD3-217	ENST00000574022	DDIT3	P35638	169 aa		2.54	□□□□□ -2
CHD3-217	ENST00000574022	CHKA	P35790	457 aa		2.54	□□□□□ -2
CHD3-217	ENST00000574022	PIK3CB	P42338	1070 aa		2.54	□□□□□ -2
CHD3-217	ENST00000574022	GRK6	P43250	576 aa		2.54	□□□□□ -2
CHD3-217	ENST00000574022	PRIM2	P49643	509 aa		2.54	□□□□□ -2
CHD3-217	ENST00000574022	AGFG1	P52594	562 aa	Known RBP	2.54	□□□□□ -2
CHD3-217	ENST00000574022	BCAR1	P56945	870 aa		2.54	□□□□□ -2
CHD3-217	ENST00000574022	SET	Q01105	290 aa	Predicted RBP	2.54	□□□□□ -2
CHD3-217	ENST00000574022	TNFAIP2	Q03169	654 aa		2.54	□□□□□ -2
CHD3-217	ENST00000574022	DUSP4	Q13115	394 aa		2.54	□□□□□ -2
CHD3-217	ENST00000574022	MOGS	Q13724	837 aa		2.54	□□□□□ -2
CHD3-217	ENST00000574022	SIM2	Q14190	667 aa	Predicted RBP	2.54	□□□□□ -2
CHD3-217	ENST00000574022	CNN3	Q15417	329 aa	Known RBP	2.54	□□□□□ -2
CHD3-217	ENST00000574022	SEC23A	Q15436	765 aa		2.54	□□□□□ -2
CHD3-217	ENST00000574022	TUBB8	Q3ZCM7	444 aa		2.54	□□□□□ -2
CHD3-217	ENST00000574022	ANO6	Q4KMQ2	910 aa		2.54	□□□□□ -2
CHD3-217	ENST00000574022	FIGN	Q5HY92	759 aa		2.54	□□□□□ -2
CHD3-217	ENST00000574022	PITRM1	Q5JRX3	1037 aa		2.54	□□□□□ -2
CHD3-217	ENST00000574022	HABP4	Q5JVS0	413 aa	Known RBP	2.54	□□□□□ -2

Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms