RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 OTOP2Q7RTS6 562 aa9.21□□□□□ -0.94
VPS53-214ENST00000572607 DEFB128Q7Z7B8 93 aa9.21□□□□□ -0.94
VPS53-214ENST00000572607 PLA2G4DQ86XP0 818 aa9.21□□□□□ -0.94
VPS53-214ENST00000572607 FAM177A1Q8N128 213 aaPredicted RBP9.21□□□□□ -0.94
VPS53-214ENST00000572607 TTC13Q8NBP0 860 aa9.21□□□□□ -0.94
VPS53-214ENST00000572607 HERVK_113Q902F9 699 aa9.21□□□□□ -0.94
VPS53-214ENST00000572607 WASF1Q92558 559 aa9.21□□□□□ -0.94
VPS53-214ENST00000572607 ATP6V0A1Q93050 837 aa9.21□□□□□ -0.94
VPS53-214ENST00000572607 SMARCAD1Q9H4L7 1026 aa9.21□□□□□ -0.94
VPS53-214ENST00000572607 KCNH7Q9NS40 1196 aa9.21□□□□□ -0.94
VPS53-214ENST00000572607 ERAP1Q9NZ08 941 aa9.21□□□□□ -0.94
VPS53-214ENST00000572607 SLC9A2Q9UBY0 812 aa9.21□□□□□ -0.94
VPS53-214ENST00000572607 KIAA1217Q5T5P2 1943 aa9.21□□□□□ -0.94
VPS53-214ENST00000572607 TMEM265A0A087WTH1 108 aa9.2□□□□□ -0.94
VPS53-214ENST00000572607 MEIS1O00470 390 aa9.2□□□□□ -0.94
VPS53-214ENST00000572607 PFKFB2O60825 505 aa9.2□□□□□ -0.94
VPS53-214ENST00000572607 CYP3A4P08684 503 aa9.2□□□□□ -0.94
VPS53-214ENST00000572607 SCRN1Q12765 414 aa9.2□□□□□ -0.94
VPS53-214ENST00000572607 RAB30Q15771 203 aa9.2□□□□□ -0.94
VPS53-214ENST00000572607 GALNT17Q6IS24 598 aa9.2□□□□□ -0.94
VPS53-214ENST00000572607 C16orf59Q7L2K0 433 aa9.2□□□□□ -0.94
VPS53-214ENST00000572607 TRIM50Q86XT4 487 aa9.2□□□□□ -0.94
VPS53-214ENST00000572607 ZNF577Q9BSK1 485 aa9.2□□□□□ -0.94
VPS53-214ENST00000572607 BCAS3Q9H6U6 928 aa9.2□□□□□ -0.94
VPS53-214ENST00000572607 AGO4Q9HCK5 861 aaKnown RBP9.2□□□□□ -0.94
VPS53-214ENST00000572607 MSRAQ9UJ68 235 aa9.2□□□□□ -0.94
VPS53-214ENST00000572607 TPCN1Q9ULQ1 816 aa9.2□□□□□ -0.94
VPS53-214ENST00000572607 PCDHA4Q9UN74 947 aa9.2□□□□□ -0.94
VPS53-214ENST00000572607 SLC4A7Q9Y6M7 1214 aa9.2□□□□□ -0.94
VPS53-214ENST00000572607 SCN10AQ9Y5Y9 1956 aa9.2□□□□□ -0.94
VPS53-214ENST00000572607 NFASCO94856 1347 aa9.2□□□□□ -0.94
VPS53-214ENST00000572607 STK36Q9NRP7 1315 aa9.2□□□□□ -0.94
VPS53-214ENST00000572607 GSTTP1A0A1W2PQM5 241 aa9.19□□□□□ -0.94
VPS53-214ENST00000572607 DDX39AO00148 427 aaKnown RBP9.19□□□□□ -0.94
VPS53-214ENST00000572607 BACH1O14867 736 aa9.19□□□□□ -0.94
VPS53-214ENST00000572607 CAND2O75155 1236 aa9.19□□□□□ -0.94
VPS53-214ENST00000572607 BAIAP3O94812 1187 aa9.19□□□□□ -0.94
VPS53-214ENST00000572607 ARP10275 920 aa9.19□□□□□ -0.94
VPS53-214ENST00000572607 CKBP12277 381 aa9.19□□□□□ -0.94
VPS53-214ENST00000572607 DNAJB2P25686 324 aa9.19□□□□□ -0.94
VPS53-214ENST00000572607 MARK3P27448 753 aa9.19□□□□□ -0.94
VPS53-214ENST00000572607 THPOP40225 353 aa9.19□□□□□ -0.94
VPS53-214ENST00000572607 KCNJ6P48051 423 aa9.19□□□□□ -0.94
VPS53-214ENST00000572607 NEK4P51957 841 aa9.19□□□□□ -0.94
VPS53-214ENST00000572607 ACTR2P61160 394 aa9.19□□□□□ -0.94
VPS53-214ENST00000572607 RBL2Q08999 1139 aa9.19□□□□□ -0.94
VPS53-214ENST00000572607 PPFIA1Q13136 1202 aa9.19□□□□□ -0.94
VPS53-214ENST00000572607 RASIP1Q5U651 963 aa9.19□□□□□ -0.94
VPS53-214ENST00000572607 FAM160B1Q5W0V3 765 aa9.19□□□□□ -0.94
VPS53-214ENST00000572607 RSPH3Q86UC2 560 aa9.19□□□□□ -0.94
VPS53-214ENST00000572607 SERINC5Q86VE9 423 aa9.19□□□□□ -0.94
VPS53-214ENST00000572607 BLIDQ8IZY5 108 aa9.19□□□□□ -0.94
VPS53-214ENST00000572607 CYP2W1Q8TAV3 490 aa9.19□□□□□ -0.94
VPS53-214ENST00000572607 RASGRP4Q8TDF6 673 aa9.19□□□□□ -0.94
VPS53-214ENST00000572607 TIFAQ96CG3 184 aa9.19□□□□□ -0.94
VPS53-214ENST00000572607 RNPEPQ9H4A4 650 aa9.19□□□□□ -0.94
VPS53-214ENST00000572607 UPF2Q9HAU5 1272 aaKnown RBP9.19□□□□□ -0.94
VPS53-214ENST00000572607 BRMS1Q9HCU9 246 aa9.19□□□□□ -0.94
VPS53-214ENST00000572607 NPDC1Q9NQX5 325 aaPredicted RBP9.19□□□□□ -0.94
VPS53-214ENST00000572607 TBC1D22BQ9NU19 505 aa9.19□□□□□ -0.94
VPS53-214ENST00000572607 SETD4Q9NVD3 440 aa9.19□□□□□ -0.94
VPS53-214ENST00000572607 EMSYQ7Z589 1322 aa9.19□□□□□ -0.94
VPS53-214ENST00000572607 NRCAMQ92823 1304 aa9.19□□□□□ -0.94
VPS53-214ENST00000572607 CCDC194A0A1B0GVG4 234 aa9.18□□□□□ -0.94
VPS53-214ENST00000572607 RRN3P2A6NIE6 340 aa9.18□□□□□ -0.94
VPS53-214ENST00000572607 RSPH10B2B2RC85 870 aa9.18□□□□□ -0.94
VPS53-214ENST00000572607 FAM86B1E9PN63 330 aa9.18□□□□□ -0.94
VPS53-214ENST00000572607 TNFRSF10AO00220 468 aa9.18□□□□□ -0.94
VPS53-214ENST00000572607 IPO5O00410 1097 aaKnown RBP9.18□□□□□ -0.94
VPS53-214ENST00000572607 TREHO43280 583 aa9.18□□□□□ -0.94
VPS53-214ENST00000572607 EFCAB14O75071 495 aa9.18□□□□□ -0.94
VPS53-214ENST00000572607 RPLP2P05387 115 aaKnown RBP9.18□□□□□ -0.94
VPS53-214ENST00000572607 FAM86B2P0C5J1 330 aa9.18□□□□□ -0.94
VPS53-214ENST00000572607 RSPH10BP0C881 870 aa9.18□□□□□ -0.94
VPS53-214ENST00000572607 ATP2A2P16615 1042 aaKnown RBP9.18□□□□□ -0.94
VPS53-214ENST00000572607 SLC26A2P50443 739 aa9.18□□□□□ -0.94
VPS53-214ENST00000572607 STAT5BP51692 787 aa9.18□□□□□ -0.94
VPS53-214ENST00000572607 USP11P51784 963 aa9.18□□□□□ -0.94
VPS53-214ENST00000572607 ZNF200P98182 395 aaPredicted RBP9.18□□□□□ -0.94
VPS53-214ENST00000572607 ITGB3BPQ13352 177 aaPredicted RBP9.18□□□□□ -0.94
VPS53-214ENST00000572607 ADGRE1Q14246 886 aa9.18□□□□□ -0.94
VPS53-214ENST00000572607 PRR16Q569H4 304 aa9.18□□□□□ -0.94
VPS53-214ENST00000572607 MIS18BP1Q6P0N0 1132 aa9.18□□□□□ -0.94
VPS53-214ENST00000572607 TAF2Q6P1X5 1199 aa9.18□□□□□ -0.94
VPS53-214ENST00000572607 KRT25Q7Z3Z0 450 aa9.18□□□□□ -0.94
VPS53-214ENST00000572607 DAGLBQ8NCG7 672 aa9.18□□□□□ -0.94
VPS53-214ENST00000572607 DHX38Q92620 1227 aaKnown RBP9.18□□□□□ -0.94
VPS53-214ENST00000572607 IL17RAQ96F46 866 aa9.18□□□□□ -0.94
VPS53-214ENST00000572607 SLC9A7Q96T83 725 aa9.18□□□□□ -0.94
VPS53-214ENST00000572607 IGLV3-22A0A075B6J6 115 aa9.17□□□□□ -0.94
VPS53-214ENST00000572607 GRXCR1A8MXD5 290 aa9.17□□□□□ -0.94
VPS53-214ENST00000572607 KIF28PB7ZC32 967 aa9.17□□□□□ -0.94
VPS53-214ENST00000572607 GFRA3O60609 400 aa9.17□□□□□ -0.94
VPS53-214ENST00000572607 LGR5O75473 907 aa9.17□□□□□ -0.94
VPS53-214ENST00000572607 CTSHP09668 335 aa9.17□□□□□ -0.94
VPS53-214ENST00000572607 HOXC8P31273 242 aa9.17□□□□□ -0.94
VPS53-214ENST00000572607 CIITAP33076 1130 aa9.17□□□□□ -0.94
VPS53-214ENST00000572607 IGBP1P78318 339 aa9.17□□□□□ -0.94
VPS53-214ENST00000572607 KRT76Q01546 638 aa9.17□□□□□ -0.94
VPS53-214ENST00000572607 TRIM29Q14134 588 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms