RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 HOXA13P31271 388 aaPredicted RBP25■■□□□ 1.59
VPS53-211ENST00000571805 CYP4A11Q02928 519 aa25■■□□□ 1.59
VPS53-211ENST00000571805 IKQ13123 557 aaPredicted RBP25■■□□□ 1.59
VPS53-211ENST00000571805 EMBQ6PCB8 327 aa25■■□□□ 1.59
VPS53-211ENST00000571805 ZNF571Q7Z3V5 609 aaPredicted RBP25■■□□□ 1.59
VPS53-211ENST00000571805 BHMT2Q9H2M3 363 aa25■■□□□ 1.59
VPS53-211ENST00000571805 ASTN1O14525 1302 aa24.99■■□□□ 1.59
VPS53-211ENST00000571805 GRID2IPA4D2P6 1211 aa24.99■■□□□ 1.59
VPS53-211ENST00000571805 EML1O00423 815 aa24.99■■□□□ 1.59
VPS53-211ENST00000571805 IVLP07476 585 aa24.99■■□□□ 1.59
VPS53-211ENST00000571805 CAVIN3Q969G5 261 aa24.99■■□□□ 1.59
VPS53-211ENST00000571805 EIF2AK1Q9BQI3 630 aaKnown RBP24.99■■□□□ 1.59
VPS53-211ENST00000571805 TYW1Q9NV66 732 aaKnown RBP24.99■■□□□ 1.59
VPS53-211ENST00000571805 SERPINA10Q9UK55 444 aa24.99■■□□□ 1.59
VPS53-211ENST00000571805 SMCHD1A6NHR9 2005 aa24.99■■□□□ 1.59
VPS53-211ENST00000571805 BRWD3Q6RI45 1802 aa24.99■■□□□ 1.59
VPS53-211ENST00000571805 ECE2O60344 883 aa24.98■■□□□ 1.59
VPS53-211ENST00000571805 RRP1BQ14684 758 aaKnown RBP24.98■■□□□ 1.59
VPS53-211ENST00000571805 EPHA7Q15375 998 aa24.98■■□□□ 1.59
VPS53-211ENST00000571805 EXOC3L4Q17RC7 722 aa24.98■■□□□ 1.59
VPS53-211ENST00000571805 ZNF622Q969S3 477 aaKnown RBP eCLIP24.98■■□□□ 1.598e-8■■■■□ 21.7
VPS53-211ENST00000571805 EYA4O95677 639 aa24.98■■□□□ 1.59
VPS53-211ENST00000571805 MMP10P09238 476 aa24.98■■□□□ 1.59
VPS53-211ENST00000571805 XRCC5P13010 732 aaKnown RBP24.98■■□□□ 1.59
VPS53-211ENST00000571805 C10orf76Q5T2E6 689 aa24.98■■□□□ 1.59
VPS53-211ENST00000571805 KRT27Q7Z3Y8 459 aa24.98■■□□□ 1.59
VPS53-211ENST00000571805 INPP4AQ96PE3 977 aaPredicted RBP24.98■■□□□ 1.59
VPS53-211ENST00000571805 SH3GL2Q99962 352 aa24.98■■□□□ 1.59
VPS53-211ENST00000571805 POLD4Q9HCU8 107 aa24.98■■□□□ 1.59
VPS53-211ENST00000571805 A0A1W2PRG0 241 aa24.97■■□□□ 1.59
VPS53-211ENST00000571805 PIK3CDO00329 1044 aa24.97■■□□□ 1.59
VPS53-211ENST00000571805 GH2P01242 217 aa24.97■■□□□ 1.59
VPS53-211ENST00000571805 NR3C1P04150 777 aa24.97■■□□□ 1.59
VPS53-211ENST00000571805 GLI1P08151 1106 aa24.97■■□□□ 1.59
VPS53-211ENST00000571805 FOXR1Q6PIV2 292 aa24.97■■□□□ 1.59
VPS53-211ENST00000571805 TSEN2Q8NCE0 465 aaKnown RBP24.97■■□□□ 1.59
VPS53-211ENST00000571805 RBM46Q8TBY0 533 aaKnown RBP24.97■■□□□ 1.59
VPS53-211ENST00000571805 TRERF1Q96PN7 1200 aa24.97■■□□□ 1.59
VPS53-211ENST00000571805 QTRT2Q9H974 415 aaKnown RBP24.97■■□□□ 1.59
VPS53-211ENST00000571805 GDF3Q9NR23 364 aa24.97■■□□□ 1.59
VPS53-211ENST00000571805 RGL1Q9NZL6 768 aa24.97■■□□□ 1.59
VPS53-211ENST00000571805 PACSIN2Q9UNF0 486 aaPredicted RBP24.97■■□□□ 1.59
VPS53-211ENST00000571805 BZW2Q9Y6E2 419 aaKnown RBP24.97■■□□□ 1.59
VPS53-211ENST00000571805 ATRNL1Q5VV63 1379 aa24.97■■□□□ 1.59
VPS53-211ENST00000571805 IGLV3-22A0A075B6J6 115 aa24.97■■□□□ 1.59
VPS53-211ENST00000571805 CASP4P49662 377 aa24.97■■□□□ 1.59
VPS53-211ENST00000571805 AKT1S1Q96B36 256 aa24.97■■□□□ 1.59
VPS53-211ENST00000571805 SIX2Q9NPC8 291 aa24.97■■□□□ 1.59
VPS53-211ENST00000571805 SLC16A3O15427 465 aaKnown RBP24.96■■□□□ 1.59
VPS53-211ENST00000571805 POLD1P28340 1107 aa24.96■■□□□ 1.59
VPS53-211ENST00000571805 KCNA1Q09470 495 aa24.96■■□□□ 1.59
VPS53-211ENST00000571805 SLC35C1Q96A29 364 aa24.96■■□□□ 1.59
VPS53-211ENST00000571805 SPAG5Q96R06 1193 aa24.96■■□□□ 1.59
VPS53-211ENST00000571805 TDRD3Q9H7E2 651 aaKnown RBP24.96■■□□□ 1.59
VPS53-211ENST00000571805 METTL14Q9HCE5 456 aaKnown RBP24.96■■□□□ 1.59
VPS53-211ENST00000571805 PRR12Q9ULL5 1215 aa24.96■■□□□ 1.59
VPS53-211ENST00000571805 RABGAP1Q9Y3P9 1069 aa24.96■■□□□ 1.59
VPS53-211ENST00000571805 PRKCIP41743 596 aa24.96■■□□□ 1.59
VPS53-211ENST00000571805 DNA2P51530 1060 aa24.96■■□□□ 1.59
VPS53-211ENST00000571805 HSD17B14Q9BPX1 270 aa24.96■■□□□ 1.59
VPS53-211ENST00000571805 FBXL5Q9UKA1 691 aa24.96■■□□□ 1.59
VPS53-211ENST00000571805 RPL13P26373 211 aaKnown RBP24.95■■□□□ 1.59
VPS53-211ENST00000571805 IRX5P78411 483 aaPredicted RBP24.95■■□□□ 1.59
VPS53-211ENST00000571805 RBM26Q5T8P6 1007 aaKnown RBP24.95■■□□□ 1.59
VPS53-211ENST00000571805 RINT1Q6NUQ1 792 aa24.95■■□□□ 1.59
VPS53-211ENST00000571805 IFT20Q8IY31 132 aa24.95■■□□□ 1.59
VPS53-211ENST00000571805 KCTD17Q8N5Z5 321 aa24.95■■□□□ 1.59
VPS53-211ENST00000571805 OLFML3Q9NRN5 406 aa24.95■■□□□ 1.59
VPS53-211ENST00000571805 NAGPAQ9UK23 515 aa24.95■■□□□ 1.59
VPS53-211ENST00000571805 AJAP1Q9UKB5 411 aaPredicted RBP24.95■■□□□ 1.59
VPS53-211ENST00000571805 NENFQ9UMX5 172 aa24.95■■□□□ 1.59
VPS53-211ENST00000571805 GCNT3O95395 438 aa24.95■■□□□ 1.58
VPS53-211ENST00000571805 ZNF76P36508 570 aa24.95■■□□□ 1.58
VPS53-211ENST00000571805 NNTQ13423 1086 aa24.95■■□□□ 1.58
VPS53-211ENST00000571805 DCAF17Q5H9S7 520 aaPredicted RBP24.95■■□□□ 1.58
VPS53-211ENST00000571805 BORCS6Q96GS4 357 aa24.95■■□□□ 1.58
VPS53-211ENST00000571805 SLX4Q8IY92 1834 aa24.94■■□□□ 1.58
VPS53-211ENST00000571805 GOLGA6CA6NDK9 693 aa24.94■■□□□ 1.58
VPS53-211ENST00000571805 TGFB1I1O43294 461 aa24.94■■□□□ 1.58
VPS53-211ENST00000571805 TBCAO75347 108 aaKnown RBP24.94■■□□□ 1.58
VPS53-211ENST00000571805 ENTPD3O75355 529 aa24.94■■□□□ 1.58
VPS53-211ENST00000571805 GOLGA6DP0CG33 693 aa24.94■■□□□ 1.58
VPS53-211ENST00000571805 JAM2P57087 298 aa24.94■■□□□ 1.58
VPS53-211ENST00000571805 ALS2CLQ60I27 953 aa24.94■■□□□ 1.58
VPS53-211ENST00000571805 FAM76AQ8TAV0 307 aa24.94■■□□□ 1.58
VPS53-211ENST00000571805 GOLGA6AQ9NYA3 693 aa24.94■■□□□ 1.58
VPS53-211ENST00000571805 CLIC2O15247 247 aa24.94■■□□□ 1.58
VPS53-211ENST00000571805 SHOX2O60902 331 aaPredicted RBP24.94■■□□□ 1.58
VPS53-211ENST00000571805 HMGB2P26583 209 aaKnown RBP24.94■■□□□ 1.58
VPS53-211ENST00000571805 CARSP49589 748 aaKnown RBP24.94■■□□□ 1.58
VPS53-211ENST00000571805 GBP6Q6ZN66 633 aa24.94■■□□□ 1.58
VPS53-211ENST00000571805 OTOP1Q7RTM1 612 aa24.94■■□□□ 1.58
VPS53-211ENST00000571805 LCMT1Q9UIC8 334 aa24.94■■□□□ 1.58
VPS53-211ENST00000571805 SFI1A8K8P3 1242 aa24.93■■□□□ 1.58
VPS53-211ENST00000571805 CES2O00748 559 aa24.93■■□□□ 1.58
VPS53-211ENST00000571805 SLITRK3O94933 977 aa24.93■■□□□ 1.58
VPS53-211ENST00000571805 EPB41P11171 864 aaKnown RBP24.93■■□□□ 1.58
VPS53-211ENST00000571805 GAP43P17677 238 aa24.93■■□□□ 1.58
VPS53-211ENST00000571805 SPICE1Q8N0Z3 855 aa24.93■■□□□ 1.58
VPS53-211ENST00000571805 WDR18Q9BV38 432 aa24.93■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms