RNA–Protein interactions for RNA: ENST00000571272.5

SCARF1-205, Transcript of scavenger receptor class F member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCARF1, Length 2,871 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARF1-205ENST00000571272 CUL1Q13616 776 aa19.08■□□□□ 0.64
SCARF1-205ENST00000571272 EDRF1Q3B7T1 1238 aa19.08■□□□□ 0.64
SCARF1-205ENST00000571272 BUD13Q9BRD0 619 aaKnown RBP eCLIP19.08■□□□□ 0.642e-6■■□□□ 13.2
SCARF1-205ENST00000571272 CELF4Q9BZC1 486 aaKnown RBP19.08■□□□□ 0.64
SCARF1-205ENST00000571272 DHX36Q9H2U1 1008 aaKnown RBP19.08■□□□□ 0.64
SCARF1-205ENST00000571272 MPHOSPH10O00566 681 aaKnown RBP19.07■□□□□ 0.64
SCARF1-205ENST00000571272 CLSTN1O94985 981 aa19.07■□□□□ 0.64
SCARF1-205ENST00000571272 LRRC45Q96CN5 670 aa19.07■□□□□ 0.64
SCARF1-205ENST00000571272 ZBTB5O15062 677 aa19.07■□□□□ 0.64
SCARF1-205ENST00000571272 FSBPO95073 299 aa19.07■□□□□ 0.64
SCARF1-205ENST00000571272 XRCC5P13010 732 aaKnown RBP19.07■□□□□ 0.64
SCARF1-205ENST00000571272 GCFC2P16383 781 aaKnown RBP19.07■□□□□ 0.64
SCARF1-205ENST00000571272 SLC12A3P55017 1021 aa19.07■□□□□ 0.64
SCARF1-205ENST00000571272 SFR1Q86XK3 245 aa19.07■□□□□ 0.64
SCARF1-205ENST00000571272 TRIM31Q9BZY9 425 aa19.07■□□□□ 0.64
SCARF1-205ENST00000571272 DPH5Q9H2P9 285 aa19.07■□□□□ 0.64
SCARF1-205ENST00000571272 BTNL10A8MVZ5 291 aa19.07■□□□□ 0.64
SCARF1-205ENST00000571272 TTI1O43156 1089 aa19.07■□□□□ 0.64
SCARF1-205ENST00000571272 AKAP3O75969 853 aa19.07■□□□□ 0.64
SCARF1-205ENST00000571272 HOXD13P35453 343 aa19.07■□□□□ 0.64
SCARF1-205ENST00000571272 CASP4P49662 377 aa19.07■□□□□ 0.64
SCARF1-205ENST00000571272 IRX3P78415 501 aaPredicted RBP19.07■□□□□ 0.64
SCARF1-205ENST00000571272 IFI16Q16666 785 aaKnown RBP19.07■□□□□ 0.64
SCARF1-205ENST00000571272 C10orf76Q5T2E6 689 aa19.07■□□□□ 0.64
SCARF1-205ENST00000571272 PPP1R18Q6NYC8 613 aa19.07■□□□□ 0.64
SCARF1-205ENST00000571272 LRIG3Q6UXM1 1119 aa19.07■□□□□ 0.64
SCARF1-205ENST00000571272 DAAM2Q86T65 1068 aa19.07■□□□□ 0.64
SCARF1-205ENST00000571272 C1orf131Q8NDD1 294 aaKnown RBP19.07■□□□□ 0.64
SCARF1-205ENST00000571272 CYFIP2Q96F07 1278 aa19.07■□□□□ 0.64
SCARF1-205ENST00000571272 CEP89Q96ST8 783 aa19.07■□□□□ 0.64
SCARF1-205ENST00000571272 DAGLAQ9Y4D2 1042 aa19.07■□□□□ 0.64
SCARF1-205ENST00000571272 TNRC6CQ9HCJ0 1690 aaKnown RBP19.06■□□□□ 0.64
SCARF1-205ENST00000571272 ATXN2Q99700 1313 aaKnown RBP19.06■□□□□ 0.64
SCARF1-205ENST00000571272 CES2O00748 559 aa19.06■□□□□ 0.64
SCARF1-205ENST00000571272 FLOT1O75955 427 aa19.06■□□□□ 0.64
SCARF1-205ENST00000571272 CATSPER3Q86XQ3 398 aa19.06■□□□□ 0.64
SCARF1-205ENST00000571272 ZC3H3Q8IXZ2 948 aaKnown RBP19.06■□□□□ 0.64
SCARF1-205ENST00000571272 ARFGAP2Q8N6H7 521 aa19.06■□□□□ 0.64
SCARF1-205ENST00000571272 U2AF1L4Q8WU68 220 aaKnown RBP19.06■□□□□ 0.64
SCARF1-205ENST00000571272 DCDC2CA8MYV0 355 aa19.06■□□□□ 0.64
SCARF1-205ENST00000571272 CLIC2O15247 247 aa19.06■□□□□ 0.64
SCARF1-205ENST00000571272 GABPAQ06546 454 aa19.06■□□□□ 0.64
SCARF1-205ENST00000571272 KNOP1Q1ED39 458 aaKnown RBP19.06■□□□□ 0.64
SCARF1-205ENST00000571272 PPP4R3CPQ6ZMV5 832 aa19.06■□□□□ 0.64
SCARF1-205ENST00000571272 CNBD1Q8NA66 436 aa19.06■□□□□ 0.64
SCARF1-205ENST00000571272 CABS1Q96KC9 395 aa19.06■□□□□ 0.64
SCARF1-205ENST00000571272 LRRC4CQ9HCJ2 640 aa19.06■□□□□ 0.64
SCARF1-205ENST00000571272 DDX4Q9NQI0 724 aaKnown RBP19.06■□□□□ 0.64
SCARF1-205ENST00000571272 NOVA2Q9UNW9 492 aaKnown RBP19.06■□□□□ 0.64
SCARF1-205ENST00000571272 BZW2Q9Y6E2 419 aaKnown RBP19.06■□□□□ 0.64
SCARF1-205ENST00000571272 H2AFZP0C0S5 128 aa19.05■□□□□ 0.64
SCARF1-205ENST00000571272 GIT2Q14161 759 aa19.05■□□□□ 0.64
SCARF1-205ENST00000571272 H2AFVQ71UI9 128 aa19.05■□□□□ 0.64
SCARF1-205ENST00000571272 FRMD5Q7Z6J6 570 aa19.05■□□□□ 0.64
SCARF1-205ENST00000571272 REEP2Q9BRK0 252 aa19.05■□□□□ 0.64
SCARF1-205ENST00000571272 CNOT8Q9UFF9 292 aaKnown RBP19.05■□□□□ 0.64
SCARF1-205ENST00000571272 GGA1Q9UJY5 639 aa19.05■□□□□ 0.64
SCARF1-205ENST00000571272 RSPH10B2B2RC85 870 aa19.05■□□□□ 0.64
SCARF1-205ENST00000571272 RGL2O15211 777 aa19.05■□□□□ 0.64
SCARF1-205ENST00000571272 RSPH10BP0C881 870 aa19.05■□□□□ 0.64
SCARF1-205ENST00000571272 ZBTB48P10074 688 aaPredicted RBP19.05■□□□□ 0.64
SCARF1-205ENST00000571272 IL1R1P14778 569 aa19.05■□□□□ 0.64
SCARF1-205ENST00000571272 USP8P40818 1118 aa19.05■□□□□ 0.64
SCARF1-205ENST00000571272 KCNA1Q09470 495 aa19.05■□□□□ 0.64
SCARF1-205ENST00000571272 PRR16Q569H4 304 aa19.05■□□□□ 0.64
SCARF1-205ENST00000571272 SWT1Q5T5J6 900 aaKnown RBP19.05■□□□□ 0.64
SCARF1-205ENST00000571272 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP19.05■□□□□ 0.64
SCARF1-205ENST00000571272 RPGRQ92834 1020 aaKnown RBP19.05■□□□□ 0.64
SCARF1-205ENST00000571272 PAGR1Q9BTK6 254 aa19.05■□□□□ 0.64
SCARF1-205ENST00000571272 KCNMB3Q9NPA1 279 aa19.05■□□□□ 0.64
SCARF1-205ENST00000571272 SLC12A6Q9UHW9 1150 aa19.05■□□□□ 0.64
SCARF1-205ENST00000571272 ATF5Q9Y2D1 282 aaPredicted RBP19.05■□□□□ 0.64
SCARF1-205ENST00000571272 PCDHB13Q9Y5F0 798 aa19.05■□□□□ 0.64
SCARF1-205ENST00000571272 IGKV6D-41A0A0C4DH26 115 aa19.04■□□□□ 0.64
SCARF1-205ENST00000571272 FRMD3A2A2Y4 597 aa19.04■□□□□ 0.64
SCARF1-205ENST00000571272 GMNCA6NCL1 334 aa19.04■□□□□ 0.64
SCARF1-205ENST00000571272 GTF2IP78347 998 aa19.04■□□□□ 0.64
SCARF1-205ENST00000571272 PDE4CQ08493 712 aa19.04■□□□□ 0.64
SCARF1-205ENST00000571272 QPCTQ16769 361 aa19.04■□□□□ 0.64
SCARF1-205ENST00000571272 RC3H1Q5TC82 1133 aaKnown RBP19.04■□□□□ 0.64
SCARF1-205ENST00000571272 ADAT2Q7Z6V5 191 aaKnown RBP19.04■□□□□ 0.64
SCARF1-205ENST00000571272 YTHDF3Q7Z739 585 aaKnown RBP19.04■□□□□ 0.64
SCARF1-205ENST00000571272 FAM163AQ96GL9 167 aaPredicted RBP19.04■□□□□ 0.64
SCARF1-205ENST00000571272 CALR3Q96L12 384 aaKnown RBP19.04■□□□□ 0.64
SCARF1-205ENST00000571272 IKZF4Q9H2S9 585 aa19.04■□□□□ 0.64
SCARF1-205ENST00000571272 GCNT4Q9P109 453 aa19.04■□□□□ 0.64
SCARF1-205ENST00000571272 DDX3XO00571 662 aaKnown RBP eCLIP19.04■□□□□ 0.64
SCARF1-205ENST00000571272 GFPT2O94808 682 aa19.04■□□□□ 0.64
SCARF1-205ENST00000571272 EPHA7Q15375 998 aa19.04■□□□□ 0.64
SCARF1-205ENST00000571272 FAM182BQ5T319 152 aa19.04■□□□□ 0.64
SCARF1-205ENST00000571272 SLF2Q8IX21 1173 aa19.04■□□□□ 0.64
SCARF1-205ENST00000571272 ANO3Q9BYT9 981 aa19.04■□□□□ 0.64
SCARF1-205ENST00000571272 OSGEPQ9NPF4 335 aa19.04■□□□□ 0.64
SCARF1-205ENST00000571272 CCNL1Q9UK58 526 aaPredicted RBP19.04■□□□□ 0.64
SCARF1-205ENST00000571272 TRAF3IP3Q9Y228 551 aa19.04■□□□□ 0.64
SCARF1-205ENST00000571272 NR2E1Q9Y466 385 aa19.04■□□□□ 0.64
SCARF1-205ENST00000571272 PCDHA1Q9Y5I3 950 aa19.04■□□□□ 0.64
SCARF1-205ENST00000571272 GAKO14976 1311 aa19.04■□□□□ 0.64
SCARF1-205ENST00000571272 CYP4A11Q02928 519 aa19.03■□□□□ 0.64
SCARF1-205ENST00000571272 DHX9Q08211 1270 aaKnown RBP19.03■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms