RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 ZFYVE21Q9BQ24 234 aa3.82□□□□□ -1.8
VPS35-208ENST00000568612 MMTAG2Q9BU76 263 aaKnown RBP3.82□□□□□ -1.8
VPS35-208ENST00000568612 KRTAP9-9Q9BYP9 154 aa3.82□□□□□ -1.8
VPS35-208ENST00000568612 KRTAP9-4Q9BYQ2 154 aa3.82□□□□□ -1.8
VPS35-208ENST00000568612 IPPKQ9H8X2 491 aa3.82□□□□□ -1.8
VPS35-208ENST00000568612 UPF2Q9HAU5 1272 aaKnown RBP3.82□□□□□ -1.8
VPS35-208ENST00000568612 PARD6AQ9NPB6 346 aa3.82□□□□□ -1.8
VPS35-208ENST00000568612 ETAA1Q9NY74 926 aa3.82□□□□□ -1.8
VPS35-208ENST00000568612 ZNF652Q9Y2D9 606 aa3.82□□□□□ -1.8
VPS35-208ENST00000568612 ASXL2Q76L83 1435 aa3.81□□□□□ -1.8
VPS35-208ENST00000568612 SPAG9O60271 1321 aaKnown RBP3.81□□□□□ -1.8
VPS35-208ENST00000568612 RPGRIP1LQ68CZ1 1315 aa3.81□□□□□ -1.8
VPS35-208ENST00000568612 HMGB1P1B2RPK0 211 aaPredicted RBP3.81□□□□□ -1.8
VPS35-208ENST00000568612 FAM47E-STBD1D6RA91 191 aa3.81□□□□□ -1.8
VPS35-208ENST00000568612 AQP7O14520 342 aa3.81□□□□□ -1.8
VPS35-208ENST00000568612 EPB41L2O43491 1005 aaKnown RBP3.81□□□□□ -1.8
VPS35-208ENST00000568612 PPFIA2O75334 1257 aa3.81□□□□□ -1.8
VPS35-208ENST00000568612 SRGAP2CP0DJJ0 459 aa3.81□□□□□ -1.8
VPS35-208ENST00000568612 NAT1P18440 290 aa3.81□□□□□ -1.8
VPS35-208ENST00000568612 KCNC1P48547 511 aa3.81□□□□□ -1.8
VPS35-208ENST00000568612 NKX3-2P78367 333 aa3.81□□□□□ -1.8
VPS35-208ENST00000568612 GUCY1A3Q02108 690 aa3.81□□□□□ -1.8
VPS35-208ENST00000568612 SPIRE1Q08AE8 756 aa3.81□□□□□ -1.8
VPS35-208ENST00000568612 LONRF3Q496Y0 759 aa3.81□□□□□ -1.8
VPS35-208ENST00000568612 HSP90B2PQ58FF3 399 aa3.81□□□□□ -1.8
VPS35-208ENST00000568612 GORABQ5T7V8 394 aa3.81□□□□□ -1.8
VPS35-208ENST00000568612 MIB1Q86YT6 1006 aa3.81□□□□□ -1.8
VPS35-208ENST00000568612 SUGP1Q8IWZ8 645 aaKnown RBP3.81□□□□□ -1.8
VPS35-208ENST00000568612 FAM126BQ8IXS8 530 aa3.81□□□□□ -1.8
VPS35-208ENST00000568612 RBM12BQ8IXT5 1001 aaKnown RBP3.81□□□□□ -1.8
VPS35-208ENST00000568612 SP8Q8IXZ3 490 aa3.81□□□□□ -1.8
VPS35-208ENST00000568612 ANKRD13AQ8IZ07 590 aa3.81□□□□□ -1.8
VPS35-208ENST00000568612 PDCL2Q8N4E4 241 aa3.81□□□□□ -1.8
VPS35-208ENST00000568612 MARCH10Q8NA82 808 aaPredicted RBP3.81□□□□□ -1.8
VPS35-208ENST00000568612 SYT8Q8NBV8 401 aa3.81□□□□□ -1.8
VPS35-208ENST00000568612 PTPRN2Q92932 1015 aa3.81□□□□□ -1.8
VPS35-208ENST00000568612 EVI5LQ96CN4 794 aa3.81□□□□□ -1.8
VPS35-208ENST00000568612 TOE1Q96GM8 510 aaKnown RBP3.81□□□□□ -1.8
VPS35-208ENST00000568612 EXOC2Q96KP1 924 aa3.81□□□□□ -1.8
VPS35-208ENST00000568612 DRC1Q96MC2 740 aa3.81□□□□□ -1.8
VPS35-208ENST00000568612 ZSWIM3Q96MP5 696 aa3.81□□□□□ -1.8
VPS35-208ENST00000568612 SLX1AQ9BQ83 275 aa3.81□□□□□ -1.8
VPS35-208ENST00000568612 GORASP1Q9BQQ3 440 aa3.81□□□□□ -1.8
VPS35-208ENST00000568612 LZTS2Q9BRK4 669 aa3.81□□□□□ -1.8
VPS35-208ENST00000568612 TACO1Q9BSH4 297 aaKnown RBP3.81□□□□□ -1.8
VPS35-208ENST00000568612 DHRS4Q9BTZ2 278 aa3.81□□□□□ -1.8
VPS35-208ENST00000568612 UBA5Q9GZZ9 404 aa3.81□□□□□ -1.8
VPS35-208ENST00000568612 MAF1Q9H063 256 aa3.81□□□□□ -1.8
VPS35-208ENST00000568612 SMOC1Q9H4F8 434 aa3.81□□□□□ -1.8
VPS35-208ENST00000568612 USP40Q9NVE5 1235 aa3.81□□□□□ -1.8
VPS35-208ENST00000568612 ABCF2Q9UG63 623 aa3.81□□□□□ -1.8
VPS35-208ENST00000568612 NDOR1Q9UHB4 597 aa3.81□□□□□ -1.8
VPS35-208ENST00000568612 NOL7Q9UMY1 257 aaKnown RBP3.81□□□□□ -1.8
VPS35-208ENST00000568612 MRPS23Q9Y3D9 190 aaKnown RBP3.81□□□□□ -1.8
VPS35-208ENST00000568612 TCRBV5S2A0A599 114 aa3.8□□□□□ -1.8
VPS35-208ENST00000568612 REC8O95072 547 aa3.8□□□□□ -1.8
VPS35-208ENST00000568612 FAM163BP0C2L3 166 aa3.8□□□□□ -1.8
VPS35-208ENST00000568612 TNNT1P13805 278 aa3.8□□□□□ -1.8
VPS35-208ENST00000568612 PAX3P23760 479 aa3.8□□□□□ -1.8
VPS35-208ENST00000568612 NAP1L1P55209 391 aaKnown RBP3.8□□□□□ -1.8
VPS35-208ENST00000568612 CTSWP56202 376 aa3.8□□□□□ -1.8
VPS35-208ENST00000568612 ST5P78524 1137 aa3.8□□□□□ -1.8
VPS35-208ENST00000568612 HTRA3P83110 453 aa3.8□□□□□ -1.8
VPS35-208ENST00000568612 ADCY2Q08462 1091 aa3.8□□□□□ -1.8
VPS35-208ENST00000568612 PAK1Q13153 545 aa3.8□□□□□ -1.8
VPS35-208ENST00000568612 TERF2Q15554 542 aa3.8□□□□□ -1.8
VPS35-208ENST00000568612 NFE2L2Q16236 605 aa3.8□□□□□ -1.8
VPS35-208ENST00000568612 VWA3BQ502W6 1294 aa3.8□□□□□ -1.8
VPS35-208ENST00000568612 HSP90AB2PQ58FF8 381 aa3.8□□□□□ -1.8
VPS35-208ENST00000568612 EMC4Q5J8M3 183 aa3.8□□□□□ -1.8
VPS35-208ENST00000568612 OTOP3Q7RTS5 596 aa3.8□□□□□ -1.8
VPS35-208ENST00000568612 MAMDC2Q7Z304 686 aaPredicted RBP3.8□□□□□ -1.8
VPS35-208ENST00000568612 LRP10Q7Z4F1 713 aa3.8□□□□□ -1.8
VPS35-208ENST00000568612 SAPCD2Q86UD0 394 aa3.8□□□□□ -1.8
VPS35-208ENST00000568612 ZC3H7AQ8IWR0 971 aaKnown RBP3.8□□□□□ -1.8
VPS35-208ENST00000568612 TP53I13Q8NBR0 393 aaPredicted RBP3.8□□□□□ -1.8
VPS35-208ENST00000568612 PHOSPHO1Q8TCT1 267 aa3.8□□□□□ -1.8
VPS35-208ENST00000568612 ANKRD7Q92527 254 aa3.8□□□□□ -1.8
VPS35-208ENST00000568612 MRFAP1L1Q96HT8 127 aa3.8□□□□□ -1.8
VPS35-208ENST00000568612 ZNF396Q96N95 335 aaPredicted RBP3.8□□□□□ -1.8
VPS35-208ENST00000568612 KCNC2Q96PR1 638 aa3.8□□□□□ -1.8
VPS35-208ENST00000568612 SPATA25Q9BR10 227 aa3.8□□□□□ -1.8
VPS35-208ENST00000568612 C22orf23Q9BZE7 217 aa3.8□□□□□ -1.8
VPS35-208ENST00000568612 ZSWIM4Q9H7M6 989 aa3.8□□□□□ -1.8
VPS35-208ENST00000568612 PANK3Q9H999 370 aa3.8□□□□□ -1.8
VPS35-208ENST00000568612 PCDH18Q9HCL0 1135 aa3.8□□□□□ -1.8
VPS35-208ENST00000568612 SLC6A20Q9NP91 592 aa3.8□□□□□ -1.8
VPS35-208ENST00000568612 NGRNQ9NPE2 291 aaKnown RBP3.8□□□□□ -1.8
VPS35-208ENST00000568612 CATSPERZQ9NTU4 200 aa3.8□□□□□ -1.8
VPS35-208ENST00000568612 CHCHD3Q9NX63 227 aaKnown RBP3.8□□□□□ -1.8
VPS35-208ENST00000568612 CWC25Q9NXE8 425 aaPredicted RBP3.8□□□□□ -1.8
VPS35-208ENST00000568612 DTLQ9NZJ0 730 aa3.8□□□□□ -1.8
VPS35-208ENST00000568612 NTMQ9P121 344 aa3.8□□□□□ -1.8
VPS35-208ENST00000568612 SUN2Q9UH99 717 aa3.8□□□□□ -1.8
VPS35-208ENST00000568612 JRKLQ9Y4A0 524 aa3.8□□□□□ -1.8
VPS35-208ENST00000568612 PCDHA9Q9Y5H5 950 aa3.8□□□□□ -1.8
VPS35-208ENST00000568612 PCDHA8Q9Y5H6 950 aa3.8□□□□□ -1.8
VPS35-208ENST00000568612 A0A1B0GUL7 405 aa3.79□□□□□ -1.8
VPS35-208ENST00000568612 PES1O00541 588 aaKnown RBP3.79□□□□□ -1.8
VPS35-208ENST00000568612 NKRFO15226 690 aaKnown RBP eCLIP3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms