RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 TEKT3Q9BXF9 490 aa11.12□□□□□ -0.63
CLN3-220ENST00000566040 UBE2OQ9C0C9 1292 aaKnown RBP11.12□□□□□ -0.63
CLN3-220ENST00000566040 IL23AQ9NPF7 189 aa11.12□□□□□ -0.63
CLN3-220ENST00000566040 ZNF302Q9NR11 478 aa11.12□□□□□ -0.63
CLN3-220ENST00000566040 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.12□□□□□ -0.63
CLN3-220ENST00000566040 GABBR1Q9UBS5 961 aa11.12□□□□□ -0.63
CLN3-220ENST00000566040 ZNF215Q9UL58 517 aaPredicted RBP11.12□□□□□ -0.63
CLN3-220ENST00000566040 SMC3Q9UQE7 1217 aa11.12□□□□□ -0.63
CLN3-220ENST00000566040 MTMR6Q9Y217 621 aa11.12□□□□□ -0.63
CLN3-220ENST00000566040 TTC3P53804 2025 aa11.12□□□□□ -0.63
CLN3-220ENST00000566040 COL6A3P12111 3177 aa11.12□□□□□ -0.63
CLN3-220ENST00000566040 NRCAMQ92823 1304 aa11.11□□□□□ -0.63
CLN3-220ENST00000566040 MYH11P35749 1972 aa11.11□□□□□ -0.63
CLN3-220ENST00000566040 A0A1W2PPC1 479 aa11.11□□□□□ -0.63
CLN3-220ENST00000566040 POTEB3A0JP26 581 aa11.11□□□□□ -0.63
CLN3-220ENST00000566040 POTEMA6NI47 508 aa11.11□□□□□ -0.63
CLN3-220ENST00000566040 ZBTB39O15060 712 aa11.11□□□□□ -0.63
CLN3-220ENST00000566040 NEMFO60524 1076 aa11.11□□□□□ -0.63
CLN3-220ENST00000566040 CHRNA1P02708 482 aa11.11□□□□□ -0.63
CLN3-220ENST00000566040 SYT1P21579 422 aa11.11□□□□□ -0.63
CLN3-220ENST00000566040 MCM7P33993 719 aa11.11□□□□□ -0.63
CLN3-220ENST00000566040 DRP2Q13474 957 aa11.11□□□□□ -0.63
CLN3-220ENST00000566040 TRIM29Q14134 588 aa11.11□□□□□ -0.63
CLN3-220ENST00000566040 ZNF174Q15697 407 aa11.11□□□□□ -0.63
CLN3-220ENST00000566040 FAM26DQ5JW98 314 aa11.11□□□□□ -0.63
CLN3-220ENST00000566040 TTC38Q5R3I4 469 aa11.11□□□□□ -0.63
CLN3-220ENST00000566040 POTEBQ6S5H4 581 aa11.11□□□□□ -0.63
CLN3-220ENST00000566040 ANO5Q75V66 913 aa11.11□□□□□ -0.63
CLN3-220ENST00000566040 LRRC8DQ7L1W4 858 aa11.11□□□□□ -0.63
CLN3-220ENST00000566040 FAM184AQ8NB25 1140 aa11.11□□□□□ -0.63
CLN3-220ENST00000566040 BANK1Q8NDB2 785 aa11.11□□□□□ -0.63
CLN3-220ENST00000566040 RDM1Q8NG50 284 aa11.11□□□□□ -0.63
CLN3-220ENST00000566040 CAGE1Q8TC20 777 aa11.11□□□□□ -0.63
CLN3-220ENST00000566040 GLG1Q92896 1179 aa11.11□□□□□ -0.63
CLN3-220ENST00000566040 LRCH3Q96II8 777 aa11.11□□□□□ -0.63
CLN3-220ENST00000566040 BRMS1Q9HCU9 246 aa11.11□□□□□ -0.63
CLN3-220ENST00000566040 FOXD4L1Q9NU39 408 aa11.11□□□□□ -0.63
CLN3-220ENST00000566040 RGL1Q9NZL6 768 aa11.11□□□□□ -0.63
CLN3-220ENST00000566040 TUBE1Q9UJT0 475 aa11.11□□□□□ -0.63
CLN3-220ENST00000566040 COL1A2P08123 1366 aa11.11□□□□□ -0.63
CLN3-220ENST00000566040 OATP04181 439 aa11.1□□□□□ -0.63
CLN3-220ENST00000566040 PSAPP07602 524 aa11.1□□□□□ -0.63
CLN3-220ENST00000566040 SPATA31C1P0DKV0 1188 aa11.1□□□□□ -0.63
CLN3-220ENST00000566040 SELPP16109 830 aa11.1□□□□□ -0.63
CLN3-220ENST00000566040 SFNP31947 248 aa11.1□□□□□ -0.63
CLN3-220ENST00000566040 SLC26A2P50443 739 aa11.1□□□□□ -0.63
CLN3-220ENST00000566040 JAK3P52333 1124 aa11.1□□□□□ -0.63
CLN3-220ENST00000566040 PKP1Q13835 747 aa11.1□□□□□ -0.63
CLN3-220ENST00000566040 ECM1Q16610 540 aa11.1□□□□□ -0.63
CLN3-220ENST00000566040 LRIT3Q3SXY7 679 aa11.1□□□□□ -0.63
CLN3-220ENST00000566040 MIS18BP1Q6P0N0 1132 aa11.1□□□□□ -0.63
CLN3-220ENST00000566040 PDXDC2PQ6P474 469 aa11.1□□□□□ -0.63
CLN3-220ENST00000566040 FAM173BQ6P4H8 233 aa11.1□□□□□ -0.63
CLN3-220ENST00000566040 MTHFD1LQ6UB35 978 aa11.1□□□□□ -0.63
CLN3-220ENST00000566040 ZNF365Q70YC5 407 aa11.1□□□□□ -0.63
CLN3-220ENST00000566040 MIER3Q7Z3K6 550 aa11.1□□□□□ -0.63
CLN3-220ENST00000566040 LRRC15Q8TF66 581 aa11.1□□□□□ -0.63
CLN3-220ENST00000566040 LINC01599Q8WXQ3 324 aa11.1□□□□□ -0.63
CLN3-220ENST00000566040 HSD17B14Q9BPX1 270 aa11.1□□□□□ -0.63
CLN3-220ENST00000566040 SH2D3AQ9BRG2 576 aa11.1□□□□□ -0.63
CLN3-220ENST00000566040 FTOQ9C0B1 505 aaKnown RBP eCLIP11.1□□□□□ -0.63
CLN3-220ENST00000566040 CDHR5Q9HBB8 845 aa11.1□□□□□ -0.63
CLN3-220ENST00000566040 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.1□□□□□ -0.63
CLN3-220ENST00000566040 RALGAPA2Q2PPJ7 1873 aa11.1□□□□□ -0.63
CLN3-220ENST00000566040 IGKV6-21A0A0C4DH24 114 aa11.09□□□□□ -0.63
CLN3-220ENST00000566040 BACH1O14867 736 aa11.09□□□□□ -0.63
CLN3-220ENST00000566040 HBP1O60381 514 aa11.09□□□□□ -0.63
CLN3-220ENST00000566040 SLITRK3O94933 977 aa11.09□□□□□ -0.63
CLN3-220ENST00000566040 CTSHP09668 335 aa11.09□□□□□ -0.63
CLN3-220ENST00000566040 ATP2B1P20020 1258 aa11.09□□□□□ -0.63
CLN3-220ENST00000566040 TRAPPC10P48553 1259 aa11.09□□□□□ -0.63
CLN3-220ENST00000566040 IGBP1P78318 339 aa11.09□□□□□ -0.63
CLN3-220ENST00000566040 ORC2Q13416 577 aaPredicted RBP11.09□□□□□ -0.63
CLN3-220ENST00000566040 CALCRLQ16602 461 aa11.09□□□□□ -0.63
CLN3-220ENST00000566040 LARP1BQ659C4 914 aaKnown RBP11.09□□□□□ -0.63
CLN3-220ENST00000566040 PLA2G4FQ68DD2 849 aa11.09□□□□□ -0.63
CLN3-220ENST00000566040 FERMT3Q86UX7 667 aa11.09□□□□□ -0.63
CLN3-220ENST00000566040 KIAA0319LQ8IZA0 1049 aa11.09□□□□□ -0.63
CLN3-220ENST00000566040 TMEM40Q8WWA1 233 aa11.09□□□□□ -0.63
CLN3-220ENST00000566040 DNAJB3Q8WWF6 145 aa11.09□□□□□ -0.63
CLN3-220ENST00000566040 BBXQ8WY36 941 aaPredicted RBP11.09□□□□□ -0.63
CLN3-220ENST00000566040 HERVK_113Q902F9 699 aa11.09□□□□□ -0.63
CLN3-220ENST00000566040 DYDC2Q96IM9 177 aa11.09□□□□□ -0.63
CLN3-220ENST00000566040 MMTAG2Q9BU76 263 aaKnown RBP11.09□□□□□ -0.63
CLN3-220ENST00000566040 NIFKQ9BYG3 293 aaKnown RBP11.09□□□□□ -0.63
CLN3-220ENST00000566040 TTC12Q9H892 705 aaPredicted RBP11.09□□□□□ -0.63
CLN3-220ENST00000566040 PRKAG2Q9UGJ0 569 aa11.09□□□□□ -0.63
CLN3-220ENST00000566040 TRPC6Q9Y210 931 aa11.09□□□□□ -0.63
CLN3-220ENST00000566040 PCDHA2Q9Y5H9 948 aa11.09□□□□□ -0.63
CLN3-220ENST00000566040 SPTBN5Q9NRC6 3674 aaKnown RBP11.08□□□□□ -0.64
CLN3-220ENST00000566040 SMIM35A0A1B0GVV1 85 aa11.08□□□□□ -0.64
CLN3-220ENST00000566040 PP2D1A8MPX8 630 aa11.08□□□□□ -0.64
CLN3-220ENST00000566040 GRXCR1A8MXD5 290 aa11.08□□□□□ -0.64
CLN3-220ENST00000566040 MED24O75448 989 aa11.08□□□□□ -0.64
CLN3-220ENST00000566040 ARHGEF15O94989 841 aa11.08□□□□□ -0.64
CLN3-220ENST00000566040 OR52Z1P0C646 297 aa11.08□□□□□ -0.64
CLN3-220ENST00000566040 KLRC1P26715 233 aa11.08□□□□□ -0.64
CLN3-220ENST00000566040 THPOP40225 353 aa11.08□□□□□ -0.64
CLN3-220ENST00000566040 ATP2C1P98194 919 aaPredicted RBP11.08□□□□□ -0.64
CLN3-220ENST00000566040 GRIN1Q05586 938 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms