RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 PIGSQ96S52 555 aa8.45□□□□□ -1.06
VPS4A-203ENST00000564399 SENP7Q9BQF6 1050 aa8.45□□□□□ -1.06
VPS4A-203ENST00000564399 MFSD1Q9H3U5 465 aa8.45□□□□□ -1.06
VPS4A-203ENST00000564399 TMEM260Q9NX78 707 aa8.45□□□□□ -1.06
VPS4A-203ENST00000564399 ERAP1Q9NZ08 941 aa8.45□□□□□ -1.06
VPS4A-203ENST00000564399 ZSWIM5Q9P217 1185 aa8.45□□□□□ -1.06
VPS4A-203ENST00000564399 PADI3Q9ULW8 664 aa8.45□□□□□ -1.06
VPS4A-203ENST00000564399 SORCS3Q9UPU3 1222 aa8.45□□□□□ -1.06
VPS4A-203ENST00000564399 NR2E1Q9Y466 385 aa8.45□□□□□ -1.06
VPS4A-203ENST00000564399 PCDHB7Q9Y5E2 793 aa8.45□□□□□ -1.06
VPS4A-203ENST00000564399 WDR87Q6ZQQ6 2873 aa8.44□□□□□ -1.06
VPS4A-203ENST00000564399 NCOR2Q9Y618 2525 aa8.44□□□□□ -1.06
VPS4A-203ENST00000564399 MBLAC1A4D2B0 266 aaPredicted RBP8.44□□□□□ -1.06
VPS4A-203ENST00000564399 TBKBP1A7MCY6 615 aa8.44□□□□□ -1.06
VPS4A-203ENST00000564399 FGF18O76093 207 aa8.44□□□□□ -1.06
VPS4A-203ENST00000564399 BRD1O95696 1058 aa8.44□□□□□ -1.06
VPS4A-203ENST00000564399 RPLP2P05387 115 aaKnown RBP8.44□□□□□ -1.06
VPS4A-203ENST00000564399 PDE1AP54750 535 aa8.44□□□□□ -1.06
VPS4A-203ENST00000564399 ERVFC1P60507 584 aa8.44□□□□□ -1.06
VPS4A-203ENST00000564399 TMEM62Q0P6H9 643 aa8.44□□□□□ -1.06
VPS4A-203ENST00000564399 NFX1Q12986 1120 aaKnown RBP8.44□□□□□ -1.06
VPS4A-203ENST00000564399 PLPP4Q5VZY2 271 aa8.44□□□□□ -1.06
VPS4A-203ENST00000564399 MCTP2Q6DN12 878 aa8.44□□□□□ -1.06
VPS4A-203ENST00000564399 PDE12Q6L8Q7 609 aaKnown RBP8.44□□□□□ -1.06
VPS4A-203ENST00000564399 SYCE2Q6PIF2 218 aa8.44□□□□□ -1.06
VPS4A-203ENST00000564399 CRIPAKQ8N1N5 446 aa8.44□□□□□ -1.06
VPS4A-203ENST00000564399 GIMAP8Q8ND71 665 aaPredicted RBP8.44□□□□□ -1.06
VPS4A-203ENST00000564399 SMARCC2Q8TAQ2 1214 aa8.44□□□□□ -1.06
VPS4A-203ENST00000564399 SEPT1Q8WYJ6 367 aa8.44□□□□□ -1.06
VPS4A-203ENST00000564399 ZBTB10Q96DT7 871 aa8.44□□□□□ -1.06
VPS4A-203ENST00000564399 KRT23Q9C075 422 aa8.44□□□□□ -1.06
VPS4A-203ENST00000564399 S1PR5Q9H228 398 aa8.44□□□□□ -1.06
VPS4A-203ENST00000564399 SMARCAD1Q9H4L7 1026 aa8.44□□□□□ -1.06
VPS4A-203ENST00000564399 PUF60Q9UHX1 559 aaKnown RBP8.44□□□□□ -1.06
VPS4A-203ENST00000564399 MAD2L2Q9UI95 211 aa8.44□□□□□ -1.06
VPS4A-203ENST00000564399 PCDHB15Q9Y5E8 787 aa8.44□□□□□ -1.06
VPS4A-203ENST00000564399 TRPV2Q9Y5S1 764 aa8.44□□□□□ -1.06
VPS4A-203ENST00000564399 SQORQ9Y6N5 450 aa8.44□□□□□ -1.06
VPS4A-203ENST00000564399 LAMA4Q16363 1823 aa8.44□□□□□ -1.06
VPS4A-203ENST00000564399 SALL3Q9BXA9 1300 aa8.44□□□□□ -1.06
VPS4A-203ENST00000564399 EPG5Q9HCE0 2579 aa8.44□□□□□ -1.06
VPS4A-203ENST00000564399 PNMA6FA0A0J9YX94 578 aa8.43□□□□□ -1.06
VPS4A-203ENST00000564399 GSTTP1A0A1W2PQM5 241 aa8.43□□□□□ -1.06
VPS4A-203ENST00000564399 PALM3A6NDB9 673 aaPredicted RBP8.43□□□□□ -1.06
VPS4A-203ENST00000564399 RRN3P2A6NIE6 340 aa8.43□□□□□ -1.06
VPS4A-203ENST00000564399 INSRRP14616 1297 aa8.43□□□□□ -1.06
VPS4A-203ENST00000564399 HOXB8P17481 243 aaPredicted RBP8.43□□□□□ -1.06
VPS4A-203ENST00000564399 SARSP49591 514 aaKnown RBP8.43□□□□□ -1.06
VPS4A-203ENST00000564399 APOBRQ0VD83 1088 aa8.43□□□□□ -1.06
VPS4A-203ENST00000564399 IMMTQ16891 758 aaKnown RBP8.43□□□□□ -1.06
VPS4A-203ENST00000564399 TMEM266Q2M3C6 531 aa8.43□□□□□ -1.06
VPS4A-203ENST00000564399 MARCH8Q5T0T0 291 aa8.43□□□□□ -1.06
VPS4A-203ENST00000564399 ASTLQ6HA08 431 aaPredicted RBP8.43□□□□□ -1.06
VPS4A-203ENST00000564399 CES5AQ6NT32 575 aa8.43□□□□□ -1.06
VPS4A-203ENST00000564399 TICAM2Q86XR7 235 aa8.43□□□□□ -1.06
VPS4A-203ENST00000564399 PIBF1Q8WXW3 757 aa8.43□□□□□ -1.06
VPS4A-203ENST00000564399 CUL5Q93034 780 aa8.43□□□□□ -1.06
VPS4A-203ENST00000564399 CELF4Q9BZC1 486 aaKnown RBP8.43□□□□□ -1.06
VPS4A-203ENST00000564399 CNNM2Q9H8M5 875 aa8.43□□□□□ -1.06
VPS4A-203ENST00000564399 ENTPD7Q9NQZ7 604 aa8.43□□□□□ -1.06
VPS4A-203ENST00000564399 PKD2L1Q9P0L9 805 aa8.43□□□□□ -1.06
VPS4A-203ENST00000564399 GINS2Q9Y248 185 aa8.43□□□□□ -1.06
VPS4A-203ENST00000564399 ZNF292O60281 2723 aa8.43□□□□□ -1.06
VPS4A-203ENST00000564399 DENND3A2RUS2 1198 aa8.42□□□□□ -1.06
VPS4A-203ENST00000564399 C2CD4DB7Z1M9 353 aa8.42□□□□□ -1.06
VPS4A-203ENST00000564399 FSCN2O14926 492 aa8.42□□□□□ -1.06
VPS4A-203ENST00000564399 ATP9AO75110 1047 aa8.42□□□□□ -1.06
VPS4A-203ENST00000564399 KRT76Q01546 638 aa8.42□□□□□ -1.06
VPS4A-203ENST00000564399 TPRNQ4KMQ1 711 aa8.42□□□□□ -1.06
VPS4A-203ENST00000564399 FAM102BQ5T8I3 360 aa8.42□□□□□ -1.06
VPS4A-203ENST00000564399 PCNX4Q63HM2 1172 aa8.42□□□□□ -1.06
VPS4A-203ENST00000564399 XRRA1Q6P2D8 792 aa8.42□□□□□ -1.06
VPS4A-203ENST00000564399 USP17L6PQ6QN14 398 aa8.42□□□□□ -1.06
VPS4A-203ENST00000564399 TMEM184AQ6ZMB5 413 aa8.42□□□□□ -1.06
VPS4A-203ENST00000564399 TMC7Q7Z402 723 aa8.42□□□□□ -1.06
VPS4A-203ENST00000564399 COLGALT1Q8NBJ5 622 aa8.42□□□□□ -1.06
VPS4A-203ENST00000564399 FLCNQ8NFG4 579 aa8.42□□□□□ -1.06
VPS4A-203ENST00000564399 KCNG4Q8TDN1 519 aa8.42□□□□□ -1.06
VPS4A-203ENST00000564399 CASP10Q92851 521 aa8.42□□□□□ -1.06
VPS4A-203ENST00000564399 TNPO1Q92973 898 aaKnown RBP8.42□□□□□ -1.06
VPS4A-203ENST00000564399 CDHR1Q96JP9 859 aa8.42□□□□□ -1.06
VPS4A-203ENST00000564399 NECTIN4Q96NY8 510 aa8.42□□□□□ -1.06
VPS4A-203ENST00000564399 TCF25Q9BQ70 676 aa8.42□□□□□ -1.06
VPS4A-203ENST00000564399 TMX1Q9H3N1 280 aa8.42□□□□□ -1.06
VPS4A-203ENST00000564399 SMOC2Q9H3U7 446 aa8.42□□□□□ -1.06
VPS4A-203ENST00000564399 POMKQ9H5K3 350 aa8.42□□□□□ -1.06
VPS4A-203ENST00000564399 AZI2Q9H6S1 392 aa8.42□□□□□ -1.06
VPS4A-203ENST00000564399 RIOX1Q9H6W3 641 aa8.42□□□□□ -1.06
VPS4A-203ENST00000564399 TYW1Q9NV66 732 aaKnown RBP8.42□□□□□ -1.06
VPS4A-203ENST00000564399 HCSTQ9UBK5 93 aa8.42□□□□□ -1.06
VPS4A-203ENST00000564399 CDH22Q9UJ99 828 aa8.42□□□□□ -1.06
VPS4A-203ENST00000564399 FRMPD4Q14CM0 1322 aa8.42□□□□□ -1.06
VPS4A-203ENST00000564399 IGSF9BQ9UPX0 1349 aa8.42□□□□□ -1.06
VPS4A-203ENST00000564399 ACACBO00763 2458 aa8.42□□□□□ -1.06
VPS4A-203ENST00000564399 HIDE1A8MVS5 230 aa8.41□□□□□ -1.06
VPS4A-203ENST00000564399 ASGR2P07307 311 aa8.41□□□□□ -1.06
VPS4A-203ENST00000564399 KCNA2P16389 499 aa8.41□□□□□ -1.06
VPS4A-203ENST00000564399 LAG3P18627 525 aa8.41□□□□□ -1.06
VPS4A-203ENST00000564399 SDSP20132 328 aa8.41□□□□□ -1.06
VPS4A-203ENST00000564399 CA8P35219 290 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms