RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 FBXO11Q86XK2 927 aa14.79□□□□□ -0.04
CLK3-215ENST00000564353 COL23A1Q86Y22 540 aaPredicted RBP14.79□□□□□ -0.04
CLK3-215ENST00000564353 ETNPPLQ8TBG4 499 aa14.79□□□□□ -0.04
CLK3-215ENST00000564353 RPGRIP1Q96KN7 1286 aa14.79□□□□□ -0.04
CLK3-215ENST00000564353 ARMCX3Q9UH62 379 aaPredicted RBP14.79□□□□□ -0.04
CLK3-215ENST00000564353 MYH7BA7E2Y1 1941 aa14.79□□□□□ -0.04
CLK3-215ENST00000564353 PLIN4Q96Q06 1357 aa14.79□□□□□ -0.04
CLK3-215ENST00000564353 KDM3AQ9Y4C1 1321 aa14.79□□□□□ -0.04
CLK3-215ENST00000564353 GRID2IPA4D2P6 1211 aa14.79□□□□□ -0.04
CLK3-215ENST00000564353 LCA5LO95447 670 aa14.79□□□□□ -0.04
CLK3-215ENST00000564353 SLC18A3Q16572 532 aa14.79□□□□□ -0.04
CLK3-215ENST00000564353 ABCB5Q2M3G0 1257 aa14.79□□□□□ -0.04
CLK3-215ENST00000564353 MMGT1Q8N4V1 131 aa14.79□□□□□ -0.04
CLK3-215ENST00000564353 LENG9Q96B70 501 aa14.79□□□□□ -0.04
CLK3-215ENST00000564353 UCHL3P15374 230 aa14.79□□□□□ -0.04
CLK3-215ENST00000564353 MCM3P25205 808 aa14.79□□□□□ -0.04
CLK3-215ENST00000564353 NT5C2P49902 561 aa14.79□□□□□ -0.04
CLK3-215ENST00000564353 ORC2Q13416 577 aaPredicted RBP14.79□□□□□ -0.04
CLK3-215ENST00000564353 AOC3Q16853 763 aa14.79□□□□□ -0.04
CLK3-215ENST00000564353 CFAP221Q4G0U5 840 aa14.79□□□□□ -0.04
CLK3-215ENST00000564353 KIAA1755Q5JYT7 1200 aa14.79□□□□□ -0.04
CLK3-215ENST00000564353 NAA35Q5VZE5 725 aa14.79□□□□□ -0.04
CLK3-215ENST00000564353 CDAN1Q8IWY9 1227 aa14.79□□□□□ -0.04
CLK3-215ENST00000564353 CCDC43Q96MW1 224 aaKnown RBP14.79□□□□□ -0.04
CLK3-215ENST00000564353 AMNQ9BXJ7 453 aa14.79□□□□□ -0.04
CLK3-215ENST00000564353 TMX4Q9H1E5 349 aaPredicted RBP14.79□□□□□ -0.04
CLK3-215ENST00000564353 GANQ9H2C0 597 aa14.79□□□□□ -0.04
CLK3-215ENST00000564353 SEPT11Q9NVA2 429 aaKnown RBP14.79□□□□□ -0.04
CLK3-215ENST00000564353 PSD3Q9NYI0 1048 aa14.79□□□□□ -0.04
CLK3-215ENST00000564353 CHORDC1Q9UHD1 332 aaPredicted RBP14.79□□□□□ -0.04
CLK3-215ENST00000564353 OPLAHO14841 1288 aa14.78□□□□□ -0.04
CLK3-215ENST00000564353 GFPT2O94808 682 aa14.78□□□□□ -0.04
CLK3-215ENST00000564353 TUBBP07437 444 aa14.78□□□□□ -0.04
CLK3-215ENST00000564353 GCFC2P16383 781 aaKnown RBP14.78□□□□□ -0.04
CLK3-215ENST00000564353 SEMA3FQ13275 785 aa14.78□□□□□ -0.04
CLK3-215ENST00000564353 EXOC3L4Q17RC7 722 aa14.78□□□□□ -0.04
CLK3-215ENST00000564353 FAM76AQ8TAV0 307 aa14.78□□□□□ -0.04
CLK3-215ENST00000564353 ACER1Q8TDN7 264 aa14.78□□□□□ -0.04
CLK3-215ENST00000564353 FEZ2Q9UHY8 353 aaPredicted RBP14.78□□□□□ -0.04
CLK3-215ENST00000564353 CEP104O60308 925 aa14.78□□□□□ -0.04
CLK3-215ENST00000564353 LRRN2O75325 713 aa14.78□□□□□ -0.04
CLK3-215ENST00000564353 TRIM49P0CI25 452 aa14.78□□□□□ -0.04
CLK3-215ENST00000564353 TRIM49CP0CI26 452 aa14.78□□□□□ -0.04
CLK3-215ENST00000564353 XRCC5P13010 732 aaKnown RBP14.78□□□□□ -0.04
CLK3-215ENST00000564353 ABCB4P21439 1286 aa14.78□□□□□ -0.04
CLK3-215ENST00000564353 PON1P27169 355 aa14.78□□□□□ -0.04
CLK3-215ENST00000564353 AARSP49588 968 aaKnown RBP eCLIP14.78□□□□□ -0.04
CLK3-215ENST00000564353 CYP2J2P51589 502 aa14.78□□□□□ -0.04
CLK3-215ENST00000564353 KNOP1Q1ED39 458 aaKnown RBP14.78□□□□□ -0.04
CLK3-215ENST00000564353 PPP1R18Q6NYC8 613 aa14.78□□□□□ -0.04
CLK3-215ENST00000564353 MYCT1Q8N699 235 aa14.78□□□□□ -0.04
CLK3-215ENST00000564353 ZIM3Q96PE6 472 aa14.78□□□□□ -0.04
CLK3-215ENST00000564353 RUFY1Q96T51 708 aa14.78□□□□□ -0.04
CLK3-215ENST00000564353 PI4KBQ9UBF8 816 aa14.78□□□□□ -0.04
CLK3-215ENST00000564353 SSU72P8A0A1W2PR75 194 aa14.77□□□□□ -0.04
CLK3-215ENST00000564353 ECE2O60344 883 aa14.77□□□□□ -0.04
CLK3-215ENST00000564353 NAB2Q15742 525 aa14.77□□□□□ -0.04
CLK3-215ENST00000564353 MUM1L1Q5H9M0 696 aa14.77□□□□□ -0.04
CLK3-215ENST00000564353 SLC27A3Q5K4L6 730 aa14.77□□□□□ -0.04
CLK3-215ENST00000564353 ELMO3Q96BJ8 720 aa14.77□□□□□ -0.04
CLK3-215ENST00000564353 EIF2AK1Q9BQI3 630 aaKnown RBP14.77□□□□□ -0.04
CLK3-215ENST00000564353 GCNT4Q9P109 453 aa14.77□□□□□ -0.04
CLK3-215ENST00000564353 SAMM50Q9Y512 469 aa14.77□□□□□ -0.04
CLK3-215ENST00000564353 TBCAO75347 108 aaKnown RBP14.77□□□□□ -0.05
CLK3-215ENST00000564353 NR3C1P04150 777 aa14.77□□□□□ -0.05
CLK3-215ENST00000564353 COPB2P35606 906 aa14.77□□□□□ -0.05
CLK3-215ENST00000564353 HLTFQ14527 1009 aaKnown RBP eCLIP14.77□□□□□ -0.05
CLK3-215ENST00000564353 TTMPQ5BVD1 217 aa14.77□□□□□ -0.05
CLK3-215ENST00000564353 MIGA2Q7L4E1 593 aa14.77□□□□□ -0.05
CLK3-215ENST00000564353 SRLQ86TD4 932 aa14.77□□□□□ -0.05
CLK3-215ENST00000564353 OR2W6PQ8NHA6 318 aa14.77□□□□□ -0.05
CLK3-215ENST00000564353 DYDC2Q96IM9 177 aa14.77□□□□□ -0.05
CLK3-215ENST00000564353 PRMT6Q96LA8 375 aaPredicted RBP14.77□□□□□ -0.05
CLK3-215ENST00000564353 CEP63Q96MT8 703 aa14.77□□□□□ -0.05
CLK3-215ENST00000564353 CSRNP1Q96S65 589 aa14.77□□□□□ -0.05
CLK3-215ENST00000564353 VIPAS39Q9H9C1 493 aa14.77□□□□□ -0.05
CLK3-215ENST00000564353 GEMIN8Q9NWZ8 242 aaKnown RBP14.77□□□□□ -0.05
CLK3-215ENST00000564353 CWC15Q9P013 229 aaKnown RBP14.77□□□□□ -0.05
CLK3-215ENST00000564353 ZBTB21Q9ULJ3 1066 aa14.77□□□□□ -0.05
CLK3-215ENST00000564353 TISP43B9A030 160 aa14.76□□□□□ -0.05
CLK3-215ENST00000564353 PJA2O43164 708 aa14.76□□□□□ -0.05
CLK3-215ENST00000564353 RAD51CO43502 376 aa14.76□□□□□ -0.05
CLK3-215ENST00000564353 ZEB2O60315 1214 aa14.76□□□□□ -0.05
CLK3-215ENST00000564353 AFPP02771 609 aaKnown RBP14.76□□□□□ -0.05
CLK3-215ENST00000564353 CCT5P48643 541 aa14.76□□□□□ -0.05
CLK3-215ENST00000564353 USP11P51784 963 aa14.76□□□□□ -0.05
CLK3-215ENST00000564353 PDCLQ13371 301 aa14.76□□□□□ -0.05
CLK3-215ENST00000564353 SYDE2Q5VT97 1194 aa14.76□□□□□ -0.05
CLK3-215ENST00000564353 HHIPL2Q6UWX4 724 aa14.76□□□□□ -0.05
CLK3-215ENST00000564353 CASKIN2Q8WXE0 1202 aa14.76□□□□□ -0.05
CLK3-215ENST00000564353 APBA3O96018 575 aa14.76□□□□□ -0.05
CLK3-215ENST00000564353 IRF2BP2Q7Z5L9 587 aa14.76□□□□□ -0.05
CLK3-215ENST00000564353 BANK1Q8NDB2 785 aa14.76□□□□□ -0.05
CLK3-215ENST00000564353 U2AF1L4Q8WU68 220 aaKnown RBP14.76□□□□□ -0.05
CLK3-215ENST00000564353 TRIM31Q9BZY9 425 aa14.76□□□□□ -0.05
CLK3-215ENST00000564353 DDX47Q9H0S4 455 aaKnown RBP14.76□□□□□ -0.05
CLK3-215ENST00000564353 RABGAP1Q9Y3P9 1069 aa14.76□□□□□ -0.05
CLK3-215ENST00000564353 ASTN1O14525 1302 aa14.76□□□□□ -0.05
CLK3-215ENST00000564353 SMCHD1A6NHR9 2005 aa14.75□□□□□ -0.05
CLK3-215ENST00000564353 TULP2O00295 520 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms