RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 MRPL44Q9H9J2 332 aaKnown RBP8.3□□□□□ -1.08
VPS39-204ENST00000561818 RAVER2Q9HCJ3 691 aaKnown RBP8.3□□□□□ -1.08
VPS39-204ENST00000561818 SLC39A2Q9NP94 309 aa8.3□□□□□ -1.08
VPS39-204ENST00000561818 ABHD10Q9NUJ1 306 aa8.3□□□□□ -1.08
VPS39-204ENST00000561818 FBXO28Q9NVF7 368 aa8.3□□□□□ -1.08
VPS39-204ENST00000561818 FBXL5Q9UKA1 691 aa8.3□□□□□ -1.08
VPS39-204ENST00000561818 FRMD4BQ9Y2L6 1034 aa8.3□□□□□ -1.08
VPS39-204ENST00000561818 BZW2Q9Y6E2 419 aaKnown RBP8.3□□□□□ -1.08
VPS39-204ENST00000561818 LOC285556D6RIA3 1793 aa8.3□□□□□ -1.08
VPS39-204ENST00000561818 POTEFA5A3E0 1075 aa8.29□□□□□ -1.08
VPS39-204ENST00000561818 C19orf67A6NJJ6 358 aa8.29□□□□□ -1.08
VPS39-204ENST00000561818 TRAF5O00463 557 aa8.29□□□□□ -1.08
VPS39-204ENST00000561818 NFIBO00712 420 aa8.29□□□□□ -1.08
VPS39-204ENST00000561818 P4HA2O15460 535 aa8.29□□□□□ -1.08
VPS39-204ENST00000561818 KIF5CO60282 957 aa8.29□□□□□ -1.08
VPS39-204ENST00000561818 USP2O75604 605 aaPredicted RBP8.29□□□□□ -1.08
VPS39-204ENST00000561818 TUBBP07437 444 aa8.29□□□□□ -1.08
VPS39-204ENST00000561818 POTEIP0CG38 1075 aa8.29□□□□□ -1.08
VPS39-204ENST00000561818 XRCC5P13010 732 aaKnown RBP8.29□□□□□ -1.08
VPS39-204ENST00000561818 SLC26A2P50443 739 aa8.29□□□□□ -1.08
VPS39-204ENST00000561818 GIT2Q14161 759 aa8.29□□□□□ -1.08
VPS39-204ENST00000561818 NEDD9Q14511 834 aa8.29□□□□□ -1.08
VPS39-204ENST00000561818 ZCWPW2Q504Y3 356 aa8.29□□□□□ -1.08
VPS39-204ENST00000561818 KIAA1755Q5JYT7 1200 aa8.29□□□□□ -1.08
VPS39-204ENST00000561818 C10orf76Q5T2E6 689 aa8.29□□□□□ -1.08
VPS39-204ENST00000561818 ANKRD40Q6AI12 368 aa8.29□□□□□ -1.08
VPS39-204ENST00000561818 POTEGQ6S5H5 508 aa8.29□□□□□ -1.08
VPS39-204ENST00000561818 POTEEQ6S8J3 1075 aa8.29□□□□□ -1.08
VPS39-204ENST00000561818 NSMFQ6X4W1 530 aa8.29□□□□□ -1.08
VPS39-204ENST00000561818 NYAP1Q6ZVC0 841 aa8.29□□□□□ -1.08
VPS39-204ENST00000561818 APTXQ7Z2E3 356 aaKnown RBP8.29□□□□□ -1.08
VPS39-204ENST00000561818 SLC9A9Q8IVB4 645 aa8.29□□□□□ -1.08
VPS39-204ENST00000561818 TPH2Q8IWU9 490 aa8.29□□□□□ -1.08
VPS39-204ENST00000561818 C12orf56Q8IXR9 622 aa8.29□□□□□ -1.08
VPS39-204ENST00000561818 SMYD4Q8IYR2 804 aaPredicted RBP8.29□□□□□ -1.08
VPS39-204ENST00000561818 TC2NQ8N9U0 490 aa8.29□□□□□ -1.08
VPS39-204ENST00000561818 REPS2Q8NFH8 660 aa8.29□□□□□ -1.08
VPS39-204ENST00000561818 ZNF507Q8TCN5 953 aa8.29□□□□□ -1.08
VPS39-204ENST00000561818 ATG4CQ96DT6 458 aa8.29□□□□□ -1.08
VPS39-204ENST00000561818 NAP1L5Q96NT1 182 aaPredicted RBP8.29□□□□□ -1.08
VPS39-204ENST00000561818 PLIN2Q99541 437 aa8.29□□□□□ -1.08
VPS39-204ENST00000561818 DNAJC7Q99615 494 aa8.29□□□□□ -1.08
VPS39-204ENST00000561818 NDST4Q9H3R1 872 aa8.29□□□□□ -1.08
VPS39-204ENST00000561818 ZCCHC17Q9NP64 241 aaKnown RBP8.29□□□□□ -1.08
VPS39-204ENST00000561818 CYP39A1Q9NYL5 469 aa8.29□□□□□ -1.08
VPS39-204ENST00000561818 ARMCX3Q9UH62 379 aaPredicted RBP8.29□□□□□ -1.08
VPS39-204ENST00000561818 NRBP1Q9UHY1 535 aa8.29□□□□□ -1.08
VPS39-204ENST00000561818 SAMM50Q9Y512 469 aa8.29□□□□□ -1.08
VPS39-204ENST00000561818 PCDHA10Q9Y5I2 948 aa8.29□□□□□ -1.08
VPS39-204ENST00000561818 UTP18Q9Y5J1 556 aaKnown RBP eCLIP8.29□□□□□ -1.08
VPS39-204ENST00000561818 SNCAIPQ9Y6H5 919 aa8.29□□□□□ -1.08
VPS39-204ENST00000561818 SPDYE16A6NNV3 312 aaPredicted RBP8.28□□□□□ -1.08
VPS39-204ENST00000561818 E9PMD0 336 aa8.28□□□□□ -1.08
VPS39-204ENST00000561818 KRT86O43790 486 aa8.28□□□□□ -1.08
VPS39-204ENST00000561818 USO1O60763 962 aaKnown RBP8.28□□□□□ -1.08
VPS39-204ENST00000561818 DGAT1O75907 488 aa8.28□□□□□ -1.08
VPS39-204ENST00000561818 GFPT2O94808 682 aa8.28□□□□□ -1.08
VPS39-204ENST00000561818 SLITRK3O94933 977 aa8.28□□□□□ -1.08
VPS39-204ENST00000561818 GCNT3O95395 438 aa8.28□□□□□ -1.08
VPS39-204ENST00000561818 EGFRP00533 1210 aa8.28□□□□□ -1.08
VPS39-204ENST00000561818 NR3C2P08235 984 aa8.28□□□□□ -1.08
VPS39-204ENST00000561818 ITGB5P18084 799 aa8.28□□□□□ -1.08
VPS39-204ENST00000561818 HNRNPH3P31942 346 aaKnown RBP8.28□□□□□ -1.08
VPS39-204ENST00000561818 KRT9P35527 623 aa8.28□□□□□ -1.08
VPS39-204ENST00000561818 GCLCP48506 637 aaPredicted RBP8.28□□□□□ -1.08
VPS39-204ENST00000561818 ETF1P62495 437 aaKnown RBP8.28□□□□□ -1.08
VPS39-204ENST00000561818 DMP1Q13316 513 aaPredicted RBP8.28□□□□□ -1.08
VPS39-204ENST00000561818 MEA1Q16626 185 aa8.28□□□□□ -1.08
VPS39-204ENST00000561818 FAM160B1Q5W0V3 765 aa8.28□□□□□ -1.08
VPS39-204ENST00000561818 RINT1Q6NUQ1 792 aa8.28□□□□□ -1.08
VPS39-204ENST00000561818 LRRC55Q6ZSA7 311 aa8.28□□□□□ -1.08
VPS39-204ENST00000561818 C1orf186Q6ZWK4 172 aa8.28□□□□□ -1.08
VPS39-204ENST00000561818 EPM2AIP1Q7L775 607 aaPredicted RBP8.28□□□□□ -1.08
VPS39-204ENST00000561818 VPS36Q86VN1 386 aa8.28□□□□□ -1.08
VPS39-204ENST00000561818 ABRAQ8N0Z2 381 aa8.28□□□□□ -1.08
VPS39-204ENST00000561818 ANKRD35Q8N283 1001 aa8.28□□□□□ -1.08
VPS39-204ENST00000561818 MYRIPQ8NFW9 859 aa8.28□□□□□ -1.08
VPS39-204ENST00000561818 NEK11Q8NG66 645 aa8.28□□□□□ -1.08
VPS39-204ENST00000561818 ZKSCAN4Q969J2 545 aaPredicted RBP8.28□□□□□ -1.08
VPS39-204ENST00000561818 PCMTD1Q96MG8 357 aaPredicted RBP8.28□□□□□ -1.08
VPS39-204ENST00000561818 DUSP9Q99956 384 aaKnown RBP8.28□□□□□ -1.08
VPS39-204ENST00000561818 REEP2Q9BRK0 252 aa8.28□□□□□ -1.08
VPS39-204ENST00000561818 MOV10L1Q9BXT6 1211 aaKnown RBP8.28□□□□□ -1.08
VPS39-204ENST00000561818 GLIS2Q9BZE0 524 aaPredicted RBP8.28□□□□□ -1.08
VPS39-204ENST00000561818 GBP3Q9H0R5 595 aa8.28□□□□□ -1.08
VPS39-204ENST00000561818 UNC45AQ9H3U1 944 aa8.28□□□□□ -1.08
VPS39-204ENST00000561818 ZHX3Q9H4I2 956 aa8.28□□□□□ -1.08
VPS39-204ENST00000561818 HAUS4Q9H6D7 363 aa8.28□□□□□ -1.08
VPS39-204ENST00000561818 KIAA1586Q9HCI6 787 aa8.28□□□□□ -1.08
VPS39-204ENST00000561818 JPH1Q9HDC5 661 aaPredicted RBP8.28□□□□□ -1.08
VPS39-204ENST00000561818 PLCB1Q9NQ66 1216 aa8.28□□□□□ -1.08
VPS39-204ENST00000561818 INTS13Q9NVM9 706 aa8.28□□□□□ -1.08
VPS39-204ENST00000561818 SLC5A4Q9NY91 659 aa8.28□□□□□ -1.08
VPS39-204ENST00000561818 PYCARDQ9ULZ3 195 aa8.28□□□□□ -1.08
VPS39-204ENST00000561818 PCDHA2Q9Y5H9 948 aa8.28□□□□□ -1.08
VPS39-204ENST00000561818 PARP14Q460N5 1801 aa8.28□□□□□ -1.08
VPS39-204ENST00000561818 A0A0G2JMZ2 1700 aa8.28□□□□□ -1.08
VPS39-204ENST00000561818 SSC5DA1L4H1 1573 aa8.27□□□□□ -1.09
VPS39-204ENST00000561818 A0A087WWV3 80 aa8.27□□□□□ -1.09
VPS39-204ENST00000561818 SSU72P8A0A1W2PR75 194 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms