RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 TAGLNQ01995 201 aaKnown RBP3.33□□□□□ -1.88
SPG11-223ENST00000560858 PHF19Q5T6S3 580 aa3.33□□□□□ -1.88
SPG11-223ENST00000560858 PCSK4Q6UW60 755 aa3.33□□□□□ -1.88
SPG11-223ENST00000560858 SND1Q7KZF4 910 aaKnown RBP eCLIP3.33□□□□□ -1.88
SPG11-223ENST00000560858 ZNF627Q7L945 461 aa3.33□□□□□ -1.88
SPG11-223ENST00000560858 DTX3Q8N9I9 347 aa3.33□□□□□ -1.88
SPG11-223ENST00000560858 FRS2Q8WU20 508 aa3.33□□□□□ -1.88
SPG11-223ENST00000560858 OR14A2Q96R54 314 aa3.33□□□□□ -1.88
SPG11-223ENST00000560858 HIRIP3Q9BW71 556 aaPredicted RBP3.33□□□□□ -1.88
SPG11-223ENST00000560858 C12orf65Q9H3J6 166 aaKnown RBP3.33□□□□□ -1.88
SPG11-223ENST00000560858 PRKRIP1Q9H875 184 aaPredicted RBP3.33□□□□□ -1.88
SPG11-223ENST00000560858 RRP7BPQ9NSQ0 103 aa3.33□□□□□ -1.88
SPG11-223ENST00000560858 PARPBPQ9NWS1 579 aa3.33□□□□□ -1.88
SPG11-223ENST00000560858 ARHGAP20Q9P2F6 1191 aa3.33□□□□□ -1.88
SPG11-223ENST00000560858 RBPJLQ9UBG7 517 aa3.33□□□□□ -1.88
SPG11-223ENST00000560858 RNF123Q5XPI4 1314 aa3.33□□□□□ -1.88
SPG11-223ENST00000560858 LRPPRCP42704 1394 aaKnown RBP3.33□□□□□ -1.88
SPG11-223ENST00000560858 KTN1Q86UP2 1357 aaKnown RBP3.33□□□□□ -1.88
SPG11-223ENST00000560858 USP47Q96K76 1375 aa3.33□□□□□ -1.88
SPG11-223ENST00000560858 ANKRD30AQ9BXX3 1397 aa3.33□□□□□ -1.88
SPG11-223ENST00000560858 ANKRD50Q9ULJ7 1429 aa3.33□□□□□ -1.88
SPG11-223ENST00000560858 CLASP1Q7Z460 1538 aa3.33□□□□□ -1.88
SPG11-223ENST00000560858 SYCP2Q9BX26 1530 aa3.33□□□□□ -1.88
SPG11-223ENST00000560858 NEURL4Q96JN8 1562 aa3.33□□□□□ -1.88
SPG11-223ENST00000560858 MADDQ8WXG6 1647 aa3.33□□□□□ -1.88
SPG11-223ENST00000560858 FOXN1O15353 648 aa3.32□□□□□ -1.88
SPG11-223ENST00000560858 NAT2P11245 290 aa3.32□□□□□ -1.88
SPG11-223ENST00000560858 FBLP22087 321 aaKnown RBP3.32□□□□□ -1.88
SPG11-223ENST00000560858 GLRBP48167 497 aa3.32□□□□□ -1.88
SPG11-223ENST00000560858 KCNAB2Q13303 367 aa3.32□□□□□ -1.88
SPG11-223ENST00000560858 LSAMPQ13449 338 aa3.32□□□□□ -1.88
SPG11-223ENST00000560858 SKIDA1Q1XH10 827 aa3.32□□□□□ -1.88
SPG11-223ENST00000560858 NBPF8Q3BBV2 869 aa3.32□□□□□ -1.88
SPG11-223ENST00000560858 ZMAT1Q5H9K5 638 aa3.32□□□□□ -1.88
SPG11-223ENST00000560858 GTF2IRD2BQ6EKJ0 949 aa3.32□□□□□ -1.88
SPG11-223ENST00000560858 LAIR1Q6GTX8 287 aa3.32□□□□□ -1.88
SPG11-223ENST00000560858 DNAJC14Q6Y2X3 702 aaPredicted RBP3.32□□□□□ -1.88
SPG11-223ENST00000560858 GTF2IRD2Q86UP8 949 aa3.32□□□□□ -1.88
SPG11-223ENST00000560858 NLRP10Q86W26 655 aa3.32□□□□□ -1.88
SPG11-223ENST00000560858 C19orf47Q8N9M1 422 aaKnown RBP3.32□□□□□ -1.88
SPG11-223ENST00000560858 PPIL4Q8WUA2 492 aaKnown RBP eCLIP3.32□□□□□ -1.88
SPG11-223ENST00000560858 EPB41L1Q9H4G0 881 aa3.32□□□□□ -1.88
SPG11-223ENST00000560858 ZFP69BQ9UJL9 534 aa3.32□□□□□ -1.88
SPG11-223ENST00000560858 INSRP06213 1382 aa3.32□□□□□ -1.88
SPG11-223ENST00000560858 GPRASP1Q5JY77 1395 aa3.32□□□□□ -1.88
SPG11-223ENST00000560858 ATP10AO60312 1499 aa3.32□□□□□ -1.88
SPG11-223ENST00000560858 ATP10BO94823 1461 aa3.32□□□□□ -1.88
SPG11-223ENST00000560858 ABCC1P33527 1531 aa3.32□□□□□ -1.88
SPG11-223ENST00000560858 DUOX2Q9NRD8 1548 aa3.32□□□□□ -1.88
SPG11-223ENST00000560858 SYNMO15061 1565 aa3.32□□□□□ -1.88
SPG11-223ENST00000560858 MYO3AQ8NEV4 1616 aa3.32□□□□□ -1.88
SPG11-223ENST00000560858 TET3O43151 1660 aa3.31□□□□□ -1.88
SPG11-223ENST00000560858 ZC3H13Q5T200 1668 aaKnown RBP3.31□□□□□ -1.88
SPG11-223ENST00000560858 ZCCHC11Q5TAX3 1644 aaKnown RBP3.31□□□□□ -1.88
SPG11-223ENST00000560858 INO80Q9ULG1 1556 aaPredicted RBP3.31□□□□□ -1.88
SPG11-223ENST00000560858 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP3.31□□□□□ -1.88
SPG11-223ENST00000560858 ARAP3Q8WWN8 1544 aa3.31□□□□□ -1.88
SPG11-223ENST00000560858 ABCC2Q92887 1545 aa3.31□□□□□ -1.88
SPG11-223ENST00000560858 PLEKHH2Q8IVE3 1493 aa3.31□□□□□ -1.88
SPG11-223ENST00000560858 PRAG1Q86YV5 1406 aa3.31□□□□□ -1.88
SPG11-223ENST00000560858 A0A1W2PQH9 124 aa3.31□□□□□ -1.88
SPG11-223ENST00000560858 MEFVO15553 781 aaPredicted RBP3.31□□□□□ -1.88
SPG11-223ENST00000560858 ENO2P09104 434 aaPredicted RBP3.31□□□□□ -1.88
SPG11-223ENST00000560858 ZNF888P0CJ79 500 aaPredicted RBP3.31□□□□□ -1.88
SPG11-223ENST00000560858 CYP4F22Q6NT55 531 aa3.31□□□□□ -1.88
SPG11-223ENST00000560858 KIAA1211LQ6NV74 962 aa3.31□□□□□ -1.88
SPG11-223ENST00000560858 SGMS1Q86VZ5 419 aa3.31□□□□□ -1.88
SPG11-223ENST00000560858 THEMISQ8N1K5 641 aaPredicted RBP3.31□□□□□ -1.88
SPG11-223ENST00000560858 STPG3Q8N7X2 389 aa3.31□□□□□ -1.88
SPG11-223ENST00000560858 NPLOC4Q8TAT6 608 aa3.31□□□□□ -1.88
SPG11-223ENST00000560858 PPP1R14AQ96A00 147 aa3.31□□□□□ -1.88
SPG11-223ENST00000560858 DPYSL5Q9BPU6 564 aa3.31□□□□□ -1.88
SPG11-223ENST00000560858 NKX2-4Q9H2Z4 354 aa3.31□□□□□ -1.88
SPG11-223ENST00000560858 MSL2Q9HCI7 577 aa3.31□□□□□ -1.88
SPG11-223ENST00000560858 CLDND1Q9NY35 253 aa3.31□□□□□ -1.88
SPG11-223ENST00000560858 ASH2LQ9UBL3 628 aa3.31□□□□□ -1.88
SPG11-223ENST00000560858 PTPN22Q9Y2R2 807 aa3.31□□□□□ -1.88
SPG11-223ENST00000560858 NR2E1Q9Y466 385 aa3.31□□□□□ -1.88
SPG11-223ENST00000560858 PCDHA2Q9Y5H9 948 aa3.31□□□□□ -1.88
SPG11-223ENST00000560858 KDM5AP29375 1690 aaKnown RBP3.3□□□□□ -1.88
SPG11-223ENST00000560858 ABCA9Q8IUA7 1624 aa3.3□□□□□ -1.88
SPG11-223ENST00000560858 VWDEQ8N2E2 1590 aa3.3□□□□□ -1.88
SPG11-223ENST00000560858 TRPM2O94759 1503 aa3.3□□□□□ -1.88
SPG11-223ENST00000560858 A2MP01023 1474 aa3.3□□□□□ -1.88
SPG11-223ENST00000560858 ERCC6Q03468 1493 aa3.3□□□□□ -1.88
SPG11-223ENST00000560858 BLMP54132 1417 aaPredicted RBP3.3□□□□□ -1.88
SPG11-223ENST00000560858 ERBINQ96RT1 1412 aa3.3□□□□□ -1.88
SPG11-223ENST00000560858 BRD4O60885 1362 aaPredicted RBP3.3□□□□□ -1.88
SPG11-223ENST00000560858 KIF15Q9NS87 1388 aa3.3□□□□□ -1.88
SPG11-223ENST00000560858 ZNF644Q9H582 1327 aaPredicted RBP3.3□□□□□ -1.88
SPG11-223ENST00000560858 CUTAO60888 179 aa3.3□□□□□ -1.88
SPG11-223ENST00000560858 RHOBTB3O94955 611 aa3.3□□□□□ -1.88
SPG11-223ENST00000560858 PEX11BO96011 259 aa3.3□□□□□ -1.88
SPG11-223ENST00000560858 ERCC3P19447 782 aa3.3□□□□□ -1.88
SPG11-223ENST00000560858 POLD1P28340 1107 aa3.3□□□□□ -1.88
SPG11-223ENST00000560858 HOXC12P31275 282 aa3.3□□□□□ -1.88
SPG11-223ENST00000560858 EIF6P56537 245 aaKnown RBP3.3□□□□□ -1.88
SPG11-223ENST00000560858 COL9A2Q14055 689 aaPredicted RBP3.3□□□□□ -1.88
SPG11-223ENST00000560858 PPP2R5EQ16537 467 aa3.3□□□□□ -1.88
SPG11-223ENST00000560858 RNF151Q2KHN1 245 aa3.3□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms