RNA–Protein interactions for RNA: ENST00000558989.1

SPG11-214, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 1,816 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-214ENST00000558989 FAM205CA6NFA0 338 aa10.93□□□□□ -0.66
SPG11-214ENST00000558989 IPO5O00410 1097 aaKnown RBP10.93□□□□□ -0.66
SPG11-214ENST00000558989 MAFGO15525 162 aa10.93□□□□□ -0.66
SPG11-214ENST00000558989 EDIL3O43854 480 aa10.93□□□□□ -0.66
SPG11-214ENST00000558989 RECKO95980 971 aa10.93□□□□□ -0.66
SPG11-214ENST00000558989 CYP3A4P08684 503 aa10.93□□□□□ -0.66
SPG11-214ENST00000558989 CTSHP09668 335 aa10.93□□□□□ -0.66
SPG11-214ENST00000558989 BFSP2Q13515 415 aa10.93□□□□□ -0.66
SPG11-214ENST00000558989 NPY5RQ15761 445 aa10.93□□□□□ -0.66
SPG11-214ENST00000558989 LETM2Q2VYF4 491 aa10.93□□□□□ -0.66
SPG11-214ENST00000558989 FAM109BQ6ICB4 259 aaPredicted RBP10.93□□□□□ -0.66
SPG11-214ENST00000558989 PIK3AP1Q6ZUJ8 805 aa10.93□□□□□ -0.66
SPG11-214ENST00000558989 PHF20Q9BVI0 1012 aa10.93□□□□□ -0.66
SPG11-214ENST00000558989 AZI2Q9H6S1 392 aa10.93□□□□□ -0.66
SPG11-214ENST00000558989 TRPC6Q9Y210 931 aa10.93□□□□□ -0.66
SPG11-214ENST00000558989 SAMM50Q9Y512 469 aa10.93□□□□□ -0.66
SPG11-214ENST00000558989 CCNE2O96020 404 aa10.93□□□□□ -0.66
SPG11-214ENST00000558989 FGBP02675 491 aa10.93□□□□□ -0.66
SPG11-214ENST00000558989 IQCF3P0C7M6 154 aa10.93□□□□□ -0.66
SPG11-214ENST00000558989 THPOP40225 353 aa10.93□□□□□ -0.66
SPG11-214ENST00000558989 NR5A1Q13285 461 aa10.93□□□□□ -0.66
SPG11-214ENST00000558989 NONOQ15233 471 aaKnown RBP eCLIP10.93□□□□□ -0.66
SPG11-214ENST00000558989 ZNF618Q5T7W0 954 aa10.93□□□□□ -0.66
SPG11-214ENST00000558989 LMBR1Q8WVP7 490 aa10.93□□□□□ -0.66
SPG11-214ENST00000558989 TRAPPC12Q8WVT3 735 aa10.93□□□□□ -0.66
SPG11-214ENST00000558989 CRYGNQ8WXF5 182 aa10.93□□□□□ -0.66
SPG11-214ENST00000558989 WASF1Q92558 559 aa10.93□□□□□ -0.66
SPG11-214ENST00000558989 PCYT2Q99447 389 aa10.93□□□□□ -0.66
SPG11-214ENST00000558989 CXXC1Q9P0U4 656 aaPredicted RBP10.93□□□□□ -0.66
SPG11-214ENST00000558989 PTPRSQ13332 1948 aa10.93□□□□□ -0.66
SPG11-214ENST00000558989 NFASCO94856 1347 aa10.92□□□□□ -0.66
SPG11-214ENST00000558989 SIP14410 1827 aa10.92□□□□□ -0.66
SPG11-214ENST00000558989 MSH4O15457 936 aa10.92□□□□□ -0.66
SPG11-214ENST00000558989 CKBP12277 381 aa10.92□□□□□ -0.66
SPG11-214ENST00000558989 PPFIA1Q13136 1202 aa10.92□□□□□ -0.66
SPG11-214ENST00000558989 LRIT3Q3SXY7 679 aa10.92□□□□□ -0.66
SPG11-214ENST00000558989 EARS2Q5JPH6 523 aaKnown RBP10.92□□□□□ -0.66
SPG11-214ENST00000558989 MCTP2Q6DN12 878 aa10.92□□□□□ -0.66
SPG11-214ENST00000558989 LRRC8DQ7L1W4 858 aa10.92□□□□□ -0.66
SPG11-214ENST00000558989 SESTD1Q86VW0 696 aa10.92□□□□□ -0.66
SPG11-214ENST00000558989 CCDC155Q8N6L0 562 aa10.92□□□□□ -0.66
SPG11-214ENST00000558989 SMARCAD1Q9H4L7 1026 aa10.92□□□□□ -0.66
SPG11-214ENST00000558989 ERAP1Q9NZ08 941 aa10.92□□□□□ -0.66
SPG11-214ENST00000558989 LAMA2P24043 3122 aaKnown RBP10.92□□□□□ -0.66
SPG11-214ENST00000558989 GRXCR2A6NFK2 248 aa10.91□□□□□ -0.66
SPG11-214ENST00000558989 M0R2N6 131 aa10.91□□□□□ -0.66
SPG11-214ENST00000558989 DHX15O43143 795 aaKnown RBP10.91□□□□□ -0.66
SPG11-214ENST00000558989 ATP2B1P20020 1258 aa10.91□□□□□ -0.66
SPG11-214ENST00000558989 KRT2P35908 639 aa10.91□□□□□ -0.66
SPG11-214ENST00000558989 STAT5BP51692 787 aa10.91□□□□□ -0.66
SPG11-214ENST00000558989 PTK7Q13308 1070 aa10.91□□□□□ -0.66
SPG11-214ENST00000558989 TRIM29Q14134 588 aa10.91□□□□□ -0.66
SPG11-214ENST00000558989 KRT40Q6A162 431 aa10.91□□□□□ -0.66
SPG11-214ENST00000558989 SWSAP1Q6NVH7 229 aa10.91□□□□□ -0.66
SPG11-214ENST00000558989 PSRC1Q6PGN9 363 aaPredicted RBP10.91□□□□□ -0.66
SPG11-214ENST00000558989 RUFY4Q6ZNE9 571 aa10.91□□□□□ -0.66
SPG11-214ENST00000558989 NIPA1Q7RTP0 329 aa10.91□□□□□ -0.66
SPG11-214ENST00000558989 KRT25Q7Z3Z0 450 aa10.91□□□□□ -0.66
SPG11-214ENST00000558989 CCDC60Q8IWA6 550 aaPredicted RBP10.91□□□□□ -0.66
SPG11-214ENST00000558989 CKAP2LQ8IYA6 745 aa10.91□□□□□ -0.66
SPG11-214ENST00000558989 RPUSD2Q8IZ73 545 aaKnown RBP10.91□□□□□ -0.66
SPG11-214ENST00000558989 DAGLBQ8NCG7 672 aa10.91□□□□□ -0.66
SPG11-214ENST00000558989 LENG9Q96B70 501 aa10.91□□□□□ -0.66
SPG11-214ENST00000558989 MICAL3Q7RTP6 2002 aa10.91□□□□□ -0.66
SPG11-214ENST00000558989 BTBD18B2RXH4 712 aa10.91□□□□□ -0.66
SPG11-214ENST00000558989 SLC37A4O43826 429 aa10.91□□□□□ -0.66
SPG11-214ENST00000558989 CCNT1O60563 726 aaKnown RBP10.91□□□□□ -0.66
SPG11-214ENST00000558989 GAS7O60861 476 aa10.91□□□□□ -0.66
SPG11-214ENST00000558989 CD2BP2O95400 341 aaKnown RBP10.91□□□□□ -0.66
SPG11-214ENST00000558989 INSRRP14616 1297 aa10.91□□□□□ -0.66
SPG11-214ENST00000558989 SELPP16109 830 aa10.91□□□□□ -0.66
SPG11-214ENST00000558989 PBX2P40425 430 aa10.91□□□□□ -0.66
SPG11-214ENST00000558989 MCCD1P59942 119 aaPredicted RBP10.91□□□□□ -0.66
SPG11-214ENST00000558989 PLCB4Q15147 1175 aa10.91□□□□□ -0.66
SPG11-214ENST00000558989 RABEP1Q15276 862 aa10.91□□□□□ -0.66
SPG11-214ENST00000558989 GRIK4Q16099 956 aa10.91□□□□□ -0.66
SPG11-214ENST00000558989 LRCH2Q5VUJ6 765 aa10.91□□□□□ -0.66
SPG11-214ENST00000558989 MIS18BP1Q6P0N0 1132 aa10.91□□□□□ -0.66
SPG11-214ENST00000558989 TMCO2Q7Z6W1 182 aaPredicted RBP10.91□□□□□ -0.66
SPG11-214ENST00000558989 DEFB123Q8N688 67 aa10.91□□□□□ -0.66
SPG11-214ENST00000558989 CAGE1Q8TC20 777 aa10.91□□□□□ -0.66
SPG11-214ENST00000558989 VWCEQ96DN2 955 aa10.91□□□□□ -0.66
SPG11-214ENST00000558989 FAM49AQ9H0Q0 323 aaPredicted RBP10.91□□□□□ -0.66
SPG11-214ENST00000558989 BRMS1Q9HCU9 246 aa10.91□□□□□ -0.66
SPG11-214ENST00000558989 ZNF302Q9NR11 478 aa10.91□□□□□ -0.66
SPG11-214ENST00000558989 DDX25Q9UHL0 483 aaKnown RBP10.91□□□□□ -0.66
SPG11-214ENST00000558989 PITPNM1O00562 1244 aa10.9□□□□□ -0.66
SPG11-214ENST00000558989 ST18O60284 1047 aa10.9□□□□□ -0.66
SPG11-214ENST00000558989 GNAT1P11488 350 aa10.9□□□□□ -0.66
SPG11-214ENST00000558989 CIITAP33076 1130 aa10.9□□□□□ -0.66
SPG11-214ENST00000558989 USP11P51784 963 aa10.9□□□□□ -0.66
SPG11-214ENST00000558989 RABGGTBP53611 331 aa10.9□□□□□ -0.66
SPG11-214ENST00000558989 MARSP56192 900 aaKnown RBP10.9□□□□□ -0.66
SPG11-214ENST00000558989 TMEM62Q0P6H9 643 aa10.9□□□□□ -0.66
SPG11-214ENST00000558989 FAM160B1Q5W0V3 765 aa10.9□□□□□ -0.66
SPG11-214ENST00000558989 GALNT17Q6IS24 598 aa10.9□□□□□ -0.66
SPG11-214ENST00000558989 PDXDC2PQ6P474 469 aa10.9□□□□□ -0.66
SPG11-214ENST00000558989 ABHD15Q6UXT9 468 aa10.9□□□□□ -0.66
SPG11-214ENST00000558989 SERINC5Q86VE9 423 aa10.9□□□□□ -0.66
SPG11-214ENST00000558989 DIS3L2Q8IYB7 885 aaKnown RBP10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms