RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 CHST14Q8NCH0 376 aa2.24□□□□□ -2.05
USP3-209ENST00000558925 SMC1BQ8NDV3 1235 aa2.24□□□□□ -2.05
USP3-209ENST00000558925 OR2W6PQ8NHA6 318 aa2.24□□□□□ -2.05
USP3-209ENST00000558925 CHAMP1Q96JM3 812 aa2.24□□□□□ -2.05
USP3-209ENST00000558925 FCRL2Q96LA5 508 aaPredicted RBP2.24□□□□□ -2.05
USP3-209ENST00000558925 JMJD8Q96S16 334 aa2.24□□□□□ -2.05
USP3-209ENST00000558925 CEP89Q96ST8 783 aa2.24□□□□□ -2.05
USP3-209ENST00000558925 MMP19Q99542 508 aa2.24□□□□□ -2.05
USP3-209ENST00000558925 TTC1Q99614 292 aa2.24□□□□□ -2.05
USP3-209ENST00000558925 ZFYVE21Q9BQ24 234 aa2.24□□□□□ -2.05
USP3-209ENST00000558925 YIPF4Q9BSR8 244 aa2.24□□□□□ -2.05
USP3-209ENST00000558925 ALG1Q9BT22 464 aa2.24□□□□□ -2.05
USP3-209ENST00000558925 RTFDC1Q9BY42 306 aaPredicted RBP2.24□□□□□ -2.05
USP3-209ENST00000558925 CHMP4AQ9BY43 222 aa2.24□□□□□ -2.05
USP3-209ENST00000558925 CELF4Q9BZC1 486 aaKnown RBP2.24□□□□□ -2.05
USP3-209ENST00000558925 IFT22Q9H7X7 185 aa2.24□□□□□ -2.05
USP3-209ENST00000558925 SMURF1Q9HCE7 757 aa2.24□□□□□ -2.05
USP3-209ENST00000558925 EMC7Q9NPA0 242 aa2.24□□□□□ -2.05
USP3-209ENST00000558925 SLC52A1Q9NWF4 448 aa2.24□□□□□ -2.05
USP3-209ENST00000558925 CLDND1Q9NY35 253 aa2.24□□□□□ -2.05
USP3-209ENST00000558925 MARCH2Q9P0N8 246 aa2.24□□□□□ -2.05
USP3-209ENST00000558925 TNFRSF10DQ9UBN6 386 aa2.24□□□□□ -2.05
USP3-209ENST00000558925 GABBR1Q9UBS5 961 aa2.24□□□□□ -2.05
USP3-209ENST00000558925 RWDD3Q9Y3V2 267 aa2.24□□□□□ -2.05
USP3-209ENST00000558925 TAF6LQ9Y6J9 622 aa2.24□□□□□ -2.05
USP3-209ENST00000558925 TNKSO95271 1327 aa2.23□□□□□ -2.05
USP3-209ENST00000558925 WTIPA6NIX2 430 aaPredicted RBP2.23□□□□□ -2.05
USP3-209ENST00000558925 B4E1Z4 1266 aa2.23□□□□□ -2.05
USP3-209ENST00000558925 ZNF561-AS1K7EIQ3 104 aa2.23□□□□□ -2.05
USP3-209ENST00000558925 NKRFO15226 690 aaKnown RBP eCLIP2.23□□□□□ -2.05
USP3-209ENST00000558925 PRPF3O43395 683 aaKnown RBP2.23□□□□□ -2.05
USP3-209ENST00000558925 TGM5O43548 720 aa2.23□□□□□ -2.05
USP3-209ENST00000558925 AKAP10O43572 662 aa2.23□□□□□ -2.05
USP3-209ENST00000558925 GAS7O60861 476 aa2.23□□□□□ -2.05
USP3-209ENST00000558925 NPTXRO95502 500 aa2.23□□□□□ -2.05
USP3-209ENST00000558925 MT-CO1P00395 513 aa2.23□□□□□ -2.05
USP3-209ENST00000558925 DBHP09172 617 aa2.23□□□□□ -2.05
USP3-209ENST00000558925 PDE6AP16499 860 aa2.23□□□□□ -2.05
USP3-209ENST00000558925 TACR1P25103 407 aa2.23□□□□□ -2.05
USP3-209ENST00000558925 RAB27AP51159 221 aa2.23□□□□□ -2.05
USP3-209ENST00000558925 NEK2P51955 445 aa2.23□□□□□ -2.05
USP3-209ENST00000558925 JAM2P57087 298 aa2.23□□□□□ -2.05
USP3-209ENST00000558925 RPL11P62913 178 aaKnown RBP2.23□□□□□ -2.05
USP3-209ENST00000558925 TMEM62Q0P6H9 643 aa2.23□□□□□ -2.05
USP3-209ENST00000558925 LSAMPQ13449 338 aa2.23□□□□□ -2.05
USP3-209ENST00000558925 R3HDM1Q15032 1099 aaKnown RBP2.23□□□□□ -2.05
USP3-209ENST00000558925 SMN1Q16637 294 aaKnown RBP2.23□□□□□ -2.05
USP3-209ENST00000558925 KIZQ2M2Z5 673 aa2.23□□□□□ -2.05
USP3-209ENST00000558925 RNF219Q5W0B1 726 aaPredicted RBP2.23□□□□□ -2.05
USP3-209ENST00000558925 HDGFL2Q7Z4V5 671 aaPredicted RBP2.23□□□□□ -2.05
USP3-209ENST00000558925 NECAB2Q7Z6G3 386 aa2.23□□□□□ -2.05
USP3-209ENST00000558925 OSTM1Q86WC4 334 aa2.23□□□□□ -2.05
USP3-209ENST00000558925 RBM12BQ8IXT5 1001 aaKnown RBP2.23□□□□□ -2.05
USP3-209ENST00000558925 CBARPQ8N350 705 aaPredicted RBP2.23□□□□□ -2.05
USP3-209ENST00000558925 CHST13Q8NET6 341 aa2.23□□□□□ -2.05
USP3-209ENST00000558925 ADAMTS17Q8TE56 1095 aa2.23□□□□□ -2.05
USP3-209ENST00000558925 SH3RF2Q8TEC5 729 aa2.23□□□□□ -2.05
USP3-209ENST00000558925 FBXW5Q969U6 566 aa2.23□□□□□ -2.05
USP3-209ENST00000558925 HOOK2Q96ED9 719 aa2.23□□□□□ -2.05
USP3-209ENST00000558925 NAF1Q96HR8 494 aaKnown RBP2.23□□□□□ -2.05
USP3-209ENST00000558925 WWC2-AS2Q96NR7 200 aa2.23□□□□□ -2.05
USP3-209ENST00000558925 ORAI3Q9BRQ5 295 aa2.23□□□□□ -2.05
USP3-209ENST00000558925 CD244Q9BZW8 370 aa2.23□□□□□ -2.05
USP3-209ENST00000558925 BCAS3Q9H6U6 928 aa2.23□□□□□ -2.05
USP3-209ENST00000558925 RXFP1Q9HBX9 757 aa2.23□□□□□ -2.05
USP3-209ENST00000558925 CATSPERZQ9NTU4 200 aa2.23□□□□□ -2.05
USP3-209ENST00000558925 OXSMQ9NWU1 459 aa2.23□□□□□ -2.05
USP3-209ENST00000558925 B4GALT6Q9UBX8 382 aa2.23□□□□□ -2.05
USP3-209ENST00000558925 APOBEC2Q9Y235 224 aaKnown RBP2.23□□□□□ -2.05
USP3-209ENST00000558925 INVSQ9Y283 1065 aa2.23□□□□□ -2.05
USP3-209ENST00000558925 FAN1Q9Y2M0 1017 aa2.23□□□□□ -2.05
USP3-209ENST00000558925 FAM47E-STBD1D6RA91 191 aa2.22□□□□□ -2.05
USP3-209ENST00000558925 FZD9O00144 591 aa2.22□□□□□ -2.05
USP3-209ENST00000558925 MAN2B1O00754 1011 aa2.22□□□□□ -2.05
USP3-209ENST00000558925 DVL2O14641 736 aa2.22□□□□□ -2.05
USP3-209ENST00000558925 WNT9AO14904 365 aa2.22□□□□□ -2.05
USP3-209ENST00000558925 TSPAN6O43657 245 aa2.22□□□□□ -2.05
USP3-209ENST00000558925 MYO1BO43795 1136 aa2.22□□□□□ -2.05
USP3-209ENST00000558925 BRINP1O60477 761 aa2.22□□□□□ -2.05
USP3-209ENST00000558925 H2AFYO75367 372 aaKnown RBP2.22□□□□□ -2.05
USP3-209ENST00000558925 TBC1D8O95759 1140 aa2.22□□□□□ -2.05
USP3-209ENST00000558925 LTFP02788 710 aa2.22□□□□□ -2.05
USP3-209ENST00000558925 FUCA1P04066 466 aa2.22□□□□□ -2.05
USP3-209ENST00000558925 ASGR2P07307 311 aa2.22□□□□□ -2.05
USP3-209ENST00000558925 ZBTB48P10074 688 aaPredicted RBP2.22□□□□□ -2.05
USP3-209ENST00000558925 GNAT1P11488 350 aa2.22□□□□□ -2.05
USP3-209ENST00000558925 CPEP16870 476 aa2.22□□□□□ -2.05
USP3-209ENST00000558925 SLC9A1P19634 815 aa2.22□□□□□ -2.05
USP3-209ENST00000558925 LSSP48449 732 aa2.22□□□□□ -2.05
USP3-209ENST00000558925 ERVK-21P61565 698 aa2.22□□□□□ -2.05
USP3-209ENST00000558925 ST5P78524 1137 aa2.22□□□□□ -2.05
USP3-209ENST00000558925 SART3Q15020 963 aaKnown RBP2.22□□□□□ -2.05
USP3-209ENST00000558925 PPP2R5AQ15172 486 aa2.22□□□□□ -2.05
USP3-209ENST00000558925 SEC23AQ15436 765 aa2.22□□□□□ -2.05
USP3-209ENST00000558925 TARBP2Q15633 366 aaKnown RBP2.22□□□□□ -2.05
USP3-209ENST00000558925 NFE2Q16621 373 aaPredicted RBP2.22□□□□□ -2.05
USP3-209ENST00000558925 ATP13A4Q4VNC1 1196 aa2.22□□□□□ -2.05
USP3-209ENST00000558925 FAM47CQ5HY64 1035 aa2.22□□□□□ -2.05
USP3-209ENST00000558925 IQSEC1Q6DN90 963 aa2.22□□□□□ -2.05
USP3-209ENST00000558925 IQCEQ6IPM2 695 aa2.22□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms