RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 LRRC55Q6ZSA7 311 aa12.34□□□□□ -0.43
LDLR-208ENST00000558518 SEPT14Q6ZU15 432 aa12.34□□□□□ -0.43
LDLR-208ENST00000558518 CCDC65Q8IXS2 484 aa12.34□□□□□ -0.43
LDLR-208ENST00000558518 CEP95Q96GE4 821 aa12.34□□□□□ -0.43
LDLR-208ENST00000558518 AK8Q96MA6 479 aa12.34□□□□□ -0.43
LDLR-208ENST00000558518 XPO6Q96QU8 1125 aaKnown RBP12.34□□□□□ -0.43
LDLR-208ENST00000558518 CARD10Q9BWT7 1032 aa12.34□□□□□ -0.43
LDLR-208ENST00000558518 AMFRQ9UKV5 643 aa12.34□□□□□ -0.43
LDLR-208ENST00000558518 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.34□□□□□ -0.438e-10■□□□□ 8.4
LDLR-208ENST00000558518 GJC1P36383 396 aa12.33□□□□□ -0.44
LDLR-208ENST00000558518 HSPA9P38646 679 aaKnown RBP12.33□□□□□ -0.44
LDLR-208ENST00000558518 LRRC63Q05C16 580 aa12.33□□□□□ -0.44
LDLR-208ENST00000558518 SLC29A2Q14542 456 aa12.33□□□□□ -0.44
LDLR-208ENST00000558518 GRM4Q14833 912 aa12.33□□□□□ -0.44
LDLR-208ENST00000558518 PPP4R3AQ6IN85 833 aa12.33□□□□□ -0.44
LDLR-208ENST00000558518 FAM228AQ86W67 206 aa12.33□□□□□ -0.44
LDLR-208ENST00000558518 SLC17A8Q8NDX2 589 aa12.33□□□□□ -0.44
LDLR-208ENST00000558518 ELMO3Q96BJ8 720 aa12.33□□□□□ -0.44
LDLR-208ENST00000558518 MIEF2Q96C03 454 aa12.33□□□□□ -0.44
LDLR-208ENST00000558518 YIPF3Q9GZM5 350 aa12.33□□□□□ -0.44
LDLR-208ENST00000558518 ATP8A2Q9NTI2 1148 aa12.33□□□□□ -0.44
LDLR-208ENST00000558518 ABCF3Q9NUQ8 709 aa12.33□□□□□ -0.44
LDLR-208ENST00000558518 RTCBQ9Y3I0 505 aaKnown RBP12.33□□□□□ -0.44
LDLR-208ENST00000558518 RASSF9O75901 435 aa12.33□□□□□ -0.44
LDLR-208ENST00000558518 FLOT1O75955 427 aa12.33□□□□□ -0.44
LDLR-208ENST00000558518 XRCC5P13010 732 aaKnown RBP12.33□□□□□ -0.44
LDLR-208ENST00000558518 IL6STP40189 918 aaPredicted RBP12.33□□□□□ -0.44
LDLR-208ENST00000558518 CASP4P49662 377 aa12.33□□□□□ -0.44
LDLR-208ENST00000558518 TTBK2Q6IQ55 1244 aa12.33□□□□□ -0.44
LDLR-208ENST00000558518 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.33□□□□□ -0.445e-8■□□□□ 11.1
LDLR-208ENST00000558518 ACTR5Q9H9F9 607 aaPredicted RBP12.33□□□□□ -0.44
LDLR-208ENST00000558518 PLCB1Q9NQ66 1216 aa12.33□□□□□ -0.44
LDLR-208ENST00000558518 GCNT4Q9P109 453 aa12.33□□□□□ -0.44
LDLR-208ENST00000558518 DAAM1Q9Y4D1 1078 aa12.33□□□□□ -0.44
LDLR-208ENST00000558518 SSU72P8A0A1W2PR75 194 aa12.32□□□□□ -0.44
LDLR-208ENST00000558518 H0Y3Z8 333 aa12.32□□□□□ -0.44
LDLR-208ENST00000558518 ORC4O43929 436 aa12.32□□□□□ -0.44
LDLR-208ENST00000558518 MYL1P05976 194 aa12.32□□□□□ -0.44
LDLR-208ENST00000558518 CYP2J2P51589 502 aa12.32□□□□□ -0.44
LDLR-208ENST00000558518 CASP5P51878 434 aa12.32□□□□□ -0.44
LDLR-208ENST00000558518 KCNJ2P63252 427 aa12.32□□□□□ -0.44
LDLR-208ENST00000558518 CDK17Q00537 523 aa12.32□□□□□ -0.44
LDLR-208ENST00000558518 DR1Q01658 176 aa12.32□□□□□ -0.44
LDLR-208ENST00000558518 PREPLQ4J6C6 727 aaPredicted RBP12.32□□□□□ -0.44
LDLR-208ENST00000558518 FIGNQ5HY92 759 aa12.32□□□□□ -0.44
LDLR-208ENST00000558518 NUGGCQ68CJ6 796 aa12.32□□□□□ -0.44
LDLR-208ENST00000558518 FAM47EQ6ZV65 393 aa12.32□□□□□ -0.44
LDLR-208ENST00000558518 RPGRQ92834 1020 aaKnown RBP12.32□□□□□ -0.44
LDLR-208ENST00000558518 MTA3Q9BTC8 594 aa12.32□□□□□ -0.44
LDLR-208ENST00000558518 TRIM6Q9C030 488 aaPredicted RBP12.32□□□□□ -0.44
LDLR-208ENST00000558518 ZMYND12Q9H0C1 365 aa12.32□□□□□ -0.44
LDLR-208ENST00000558518 CUEDC2Q9H467 287 aa12.32□□□□□ -0.44
LDLR-208ENST00000558518 MCM8Q9UJA3 840 aa12.32□□□□□ -0.44
LDLR-208ENST00000558518 PLA2G4BP0C869 781 aa12.32□□□□□ -0.44
LDLR-208ENST00000558518 UCHL3P15374 230 aa12.32□□□□□ -0.44
LDLR-208ENST00000558518 RPS8P62241 208 aaKnown RBP12.32□□□□□ -0.44
LDLR-208ENST00000558518 UBE4AQ14139 1066 aa12.32□□□□□ -0.44
LDLR-208ENST00000558518 NBPF5PQ86XG9 351 aaPredicted RBP12.32□□□□□ -0.44
LDLR-208ENST00000558518 CCDC105Q8IYK2 499 aa12.32□□□□□ -0.44
LDLR-208ENST00000558518 FBXO25Q8TCJ0 367 aa12.32□□□□□ -0.44
LDLR-208ENST00000558518 CTTNBP2NLQ9P2B4 639 aa12.32□□□□□ -0.44
LDLR-208ENST00000558518 SESN3P58005 492 aa12.32□□□□□ -0.44
LDLR-208ENST00000558518 KCNA1Q09470 495 aa12.32□□□□□ -0.44
LDLR-208ENST00000558518 LONRF1Q17RB8 773 aa12.32□□□□□ -0.44
LDLR-208ENST00000558518 USH1GQ495M9 461 aa12.32□□□□□ -0.44
LDLR-208ENST00000558518 KLHL29Q96CT2 875 aa12.32□□□□□ -0.44
LDLR-208ENST00000558518 FGFR1OP2Q9NVK5 253 aa12.32□□□□□ -0.44
LDLR-208ENST00000558518 RNF14Q9UBS8 474 aa12.32□□□□□ -0.44
LDLR-208ENST00000558518 NAGPAQ9UK23 515 aa12.32□□□□□ -0.44
LDLR-208ENST00000558518 GOLGA6L10A0A0M3HER8 536 aa12.31□□□□□ -0.44
LDLR-208ENST00000558518 ATMINO43313 823 aaPredicted RBP12.31□□□□□ -0.44
LDLR-208ENST00000558518 PSEN1P49768 467 aa12.31□□□□□ -0.44
LDLR-208ENST00000558518 CUL1Q13616 776 aa12.31□□□□□ -0.44
LDLR-208ENST00000558518 MESDQ14696 234 aa12.31□□□□□ -0.44
LDLR-208ENST00000558518 IFI16Q16666 785 aaKnown RBP12.31□□□□□ -0.44
LDLR-208ENST00000558518 HP1BP3Q5SSJ5 553 aaPredicted RBP12.31□□□□□ -0.44
LDLR-208ENST00000558518 SPICE1Q8N0Z3 855 aa12.31□□□□□ -0.44
LDLR-208ENST00000558518 FAM118BQ9BPY3 351 aa12.31□□□□□ -0.44
LDLR-208ENST00000558518 SEMA4AQ9H3S1 761 aa12.31□□□□□ -0.44
LDLR-208ENST00000558518 SLIT3O75094 1523 aa12.31□□□□□ -0.44
LDLR-208ENST00000558518 RSPH10B2B2RC85 870 aa12.31□□□□□ -0.44
LDLR-208ENST00000558518 ANP32DO95626 131 aa12.31□□□□□ -0.44
LDLR-208ENST00000558518 ATP6V1G2O95670 118 aa12.31□□□□□ -0.44
LDLR-208ENST00000558518 RSPH10BP0C881 870 aa12.31□□□□□ -0.44
LDLR-208ENST00000558518 SSR1P43307 286 aaKnown RBP12.31□□□□□ -0.44
LDLR-208ENST00000558518 USP11P51784 963 aa12.31□□□□□ -0.44
LDLR-208ENST00000558518 GALCP54803 685 aa12.31□□□□□ -0.44
LDLR-208ENST00000558518 MTMR3Q13615 1198 aa12.31□□□□□ -0.44
LDLR-208ENST00000558518 PRR16Q569H4 304 aa12.31□□□□□ -0.44
LDLR-208ENST00000558518 C12orf60Q5U649 245 aa12.31□□□□□ -0.44
LDLR-208ENST00000558518 ZNF662Q6ZS27 426 aa12.31□□□□□ -0.44
LDLR-208ENST00000558518 TMC3Q7Z5M5 1100 aa12.31□□□□□ -0.44
LDLR-208ENST00000558518 DGKHQ86XP1 1220 aa12.31□□□□□ -0.44
LDLR-208ENST00000558518 C18orf8Q96DM3 657 aa12.31□□□□□ -0.44
LDLR-208ENST00000558518 SWAP70Q9UH65 585 aa12.31□□□□□ -0.44
LDLR-208ENST00000558518 CHD4Q14839 1912 aa12.31□□□□□ -0.44
LDLR-208ENST00000558518 GSTTP1A0A1W2PQM5 241 aa12.31□□□□□ -0.44
LDLR-208ENST00000558518 CCT8L1PA6NM43 557 aa12.31□□□□□ -0.44
LDLR-208ENST00000558518 F8VZ95 297 aa12.31□□□□□ -0.44
LDLR-208ENST00000558518 PJA2O43164 708 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms