RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 IPO9Q96P70 1041 aaKnown RBP4.37□□□□□ -1.71
VPS13C-205ENST00000558088 ZDHHC5Q9C0B5 715 aa4.37□□□□□ -1.71
VPS13C-205ENST00000558088 INCENPQ9NQS7 918 aa4.37□□□□□ -1.71
VPS13C-205ENST00000558088 CATSPERZQ9NTU4 200 aa4.37□□□□□ -1.71
VPS13C-205ENST00000558088 BLACEA4D250 179 aa4.36□□□□□ -1.71
VPS13C-205ENST00000558088 UNCXA6NJT0 531 aa4.36□□□□□ -1.71
VPS13C-205ENST00000558088 PTGS1P23219 599 aa4.36□□□□□ -1.71
VPS13C-205ENST00000558088 ACRV1P26436 265 aa4.36□□□□□ -1.71
VPS13C-205ENST00000558088 DNAJA1P31689 397 aaKnown RBP4.36□□□□□ -1.71
VPS13C-205ENST00000558088 ADCY8P40145 1251 aa4.36□□□□□ -1.71
VPS13C-205ENST00000558088 INHBCP55103 352 aa4.36□□□□□ -1.71
VPS13C-205ENST00000558088 ST5P78524 1137 aa4.36□□□□□ -1.71
VPS13C-205ENST00000558088 NFYCQ13952 458 aa4.36□□□□□ -1.71
VPS13C-205ENST00000558088 NTRK3Q16288 839 aa4.36□□□□□ -1.71
VPS13C-205ENST00000558088 FIGNQ5HY92 759 aa4.36□□□□□ -1.71
VPS13C-205ENST00000558088 MCF2L2Q86YR7 1114 aa4.36□□□□□ -1.71
VPS13C-205ENST00000558088 RTKN2Q8IZC4 609 aa4.36□□□□□ -1.71
VPS13C-205ENST00000558088 FBXW5Q969U6 566 aa4.36□□□□□ -1.71
VPS13C-205ENST00000558088 CEP89Q96ST8 783 aa4.36□□□□□ -1.71
VPS13C-205ENST00000558088 PRAMEF25A6NGN4 478 aa4.35□□□□□ -1.71
VPS13C-205ENST00000558088 CYP27B1O15528 508 aa4.35□□□□□ -1.71
VPS13C-205ENST00000558088 NARSO43776 548 aaKnown RBP4.35□□□□□ -1.71
VPS13C-205ENST00000558088 PPFIA2O75334 1257 aa4.35□□□□□ -1.71
VPS13C-205ENST00000558088 TCF3P15923 654 aa4.35□□□□□ -1.71
VPS13C-205ENST00000558088 HIBADHP31937 336 aaKnown RBP4.35□□□□□ -1.71
VPS13C-205ENST00000558088 TUBA3CQ13748 450 aa4.35□□□□□ -1.71
VPS13C-205ENST00000558088 TUBA3EQ6PEY2 450 aa4.35□□□□□ -1.71
VPS13C-205ENST00000558088 MAMDC4Q6UXC1 1216 aa4.35□□□□□ -1.71
VPS13C-205ENST00000558088 USP30Q70CQ3 517 aa4.35□□□□□ -1.71
VPS13C-205ENST00000558088 MAMDC2Q7Z304 686 aaPredicted RBP4.35□□□□□ -1.71
VPS13C-205ENST00000558088 NEU4Q8WWR8 484 aaPredicted RBP4.35□□□□□ -1.71
VPS13C-205ENST00000558088 CDC6Q99741 560 aa4.35□□□□□ -1.71
VPS13C-205ENST00000558088 TRIM55Q9BYV6 548 aa4.35□□□□□ -1.71
VPS13C-205ENST00000558088 KIAA1683Q9H0B3 1180 aa4.35□□□□□ -1.71
VPS13C-205ENST00000558088 OR10A2Q9H208 303 aa4.35□□□□□ -1.71
VPS13C-205ENST00000558088 NELFAQ9H3P2 528 aa4.35□□□□□ -1.71
VPS13C-205ENST00000558088 GALNT8Q9NY28 637 aa4.35□□□□□ -1.71
VPS13C-205ENST00000558088 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP4.34□□□□□ -1.71
VPS13C-205ENST00000558088 FAM90A27PA6NNH2 459 aa4.34□□□□□ -1.71
VPS13C-205ENST00000558088 U2SURPO15042 1029 aaKnown RBP4.34□□□□□ -1.71
VPS13C-205ENST00000558088 C1SP09871 688 aa4.34□□□□□ -1.71
VPS13C-205ENST00000558088 KRT15P19012 456 aa4.34□□□□□ -1.71
VPS13C-205ENST00000558088 MAKP20794 623 aa4.34□□□□□ -1.71
VPS13C-205ENST00000558088 MSX2P35548 267 aaPredicted RBP4.34□□□□□ -1.71
VPS13C-205ENST00000558088 HERVK_113P62684 666 aa4.34□□□□□ -1.71
VPS13C-205ENST00000558088 IL13RA1P78552 427 aa4.34□□□□□ -1.71
VPS13C-205ENST00000558088 DGCR2P98153 550 aa4.34□□□□□ -1.71
VPS13C-205ENST00000558088 NOLC1Q14978 699 aaKnown RBP eCLIP4.34□□□□□ -1.71
VPS13C-205ENST00000558088 CRY1Q16526 586 aa4.34□□□□□ -1.71
VPS13C-205ENST00000558088 FAM47CQ5HY64 1035 aa4.34□□□□□ -1.71
VPS13C-205ENST00000558088 Q6ZSN1 163 aa4.34□□□□□ -1.71
VPS13C-205ENST00000558088 ADGRE4PQ86SQ3 457 aa4.34□□□□□ -1.71
VPS13C-205ENST00000558088 SGMS1Q86VZ5 419 aa4.34□□□□□ -1.71
VPS13C-205ENST00000558088 PTRH1Q86Y79 214 aaKnown RBP4.34□□□□□ -1.71
VPS13C-205ENST00000558088 ZNF808Q8N4W9 903 aaPredicted RBP4.34□□□□□ -1.71
VPS13C-205ENST00000558088 SH3RF2Q8TEC5 729 aa4.34□□□□□ -1.71
VPS13C-205ENST00000558088 ZNF483Q8TF39 744 aaPredicted RBP4.34□□□□□ -1.71
VPS13C-205ENST00000558088 ZNF669Q96BR6 464 aaPredicted RBP4.34□□□□□ -1.71
VPS13C-205ENST00000558088 TLR9Q9NR96 1032 aa4.34□□□□□ -1.71
VPS13C-205ENST00000558088 PLA2G3Q9NZ20 509 aa4.34□□□□□ -1.71
VPS13C-205ENST00000558088 FAM184BQ9ULE4 1060 aa4.34□□□□□ -1.71
VPS13C-205ENST00000558088 TRAF6Q9Y4K3 522 aa4.34□□□□□ -1.71
VPS13C-205ENST00000558088 A0A087X1B8 175 aa4.33□□□□□ -1.72
VPS13C-205ENST00000558088 WNT9AO14904 365 aa4.33□□□□□ -1.72
VPS13C-205ENST00000558088 PDE6AP16499 860 aa4.33□□□□□ -1.72
VPS13C-205ENST00000558088 AOAHP28039 575 aa4.33□□□□□ -1.72
VPS13C-205ENST00000558088 MRE11P49959 708 aa4.33□□□□□ -1.72
VPS13C-205ENST00000558088 GUCY1A3Q02108 690 aa4.33□□□□□ -1.72
VPS13C-205ENST00000558088 CRHR2Q13324 411 aa4.33□□□□□ -1.72
VPS13C-205ENST00000558088 EIF4HQ15056 248 aaKnown RBP4.33□□□□□ -1.72
VPS13C-205ENST00000558088 PCOLCEQ15113 449 aa4.33□□□□□ -1.72
VPS13C-205ENST00000558088 YOD1Q5VVQ6 348 aaPredicted RBP4.33□□□□□ -1.72
VPS13C-205ENST00000558088 IGFL4Q6B9Z1 124 aa4.33□□□□□ -1.72
VPS13C-205ENST00000558088 SCUBE1Q8IWY4 988 aa4.33□□□□□ -1.72
VPS13C-205ENST00000558088 THEMISQ8N1K5 641 aaPredicted RBP4.33□□□□□ -1.72
VPS13C-205ENST00000558088 D2HGDHQ8N465 521 aa4.33□□□□□ -1.72
VPS13C-205ENST00000558088 IL17DQ8TAD2 202 aa4.33□□□□□ -1.72
VPS13C-205ENST00000558088 CACTINQ8WUQ7 758 aaKnown RBP4.33□□□□□ -1.72
VPS13C-205ENST00000558088 PTPRN2Q92932 1015 aa4.33□□□□□ -1.72
VPS13C-205ENST00000558088 BTBD2Q9BX70 525 aa4.33□□□□□ -1.72
VPS13C-205ENST00000558088 IKZF4Q9H2S9 585 aa4.33□□□□□ -1.72
VPS13C-205ENST00000558088 PARPBPQ9NWS1 579 aa4.33□□□□□ -1.72
VPS13C-205ENST00000558088 CDC42EP3Q9UKI2 254 aa4.33□□□□□ -1.72
VPS13C-205ENST00000558088 GIT1Q9Y2X7 761 aa4.33□□□□□ -1.72
VPS13C-205ENST00000558088 REXO2Q9Y3B8 237 aaKnown RBP4.33□□□□□ -1.72
VPS13C-205ENST00000558088 ASXL2Q76L83 1435 aa4.32□□□□□ -1.72
VPS13C-205ENST00000558088 A0A0G2JNJ9 132 aa4.32□□□□□ -1.72
VPS13C-205ENST00000558088 TCRBV5S4A2TA0A5A2 114 aa4.32□□□□□ -1.72
VPS13C-205ENST00000558088 CAPN14A8MX76 684 aa4.32□□□□□ -1.72
VPS13C-205ENST00000558088 MAN2B1O00754 1011 aa4.32□□□□□ -1.72
VPS13C-205ENST00000558088 SUMO1P63165 101 aaKnown RBP4.32□□□□□ -1.72
VPS13C-205ENST00000558088 FOXL1Q12952 345 aa4.32□□□□□ -1.72
VPS13C-205ENST00000558088 DUSP8Q13202 625 aa4.32□□□□□ -1.72
VPS13C-205ENST00000558088 GRM7Q14831 915 aa4.32□□□□□ -1.72
VPS13C-205ENST00000558088 C16orf59Q7L2K0 433 aa4.32□□□□□ -1.72
VPS13C-205ENST00000558088 FILIP1Q7Z7B0 1213 aa4.32□□□□□ -1.72
VPS13C-205ENST00000558088 OSTM1Q86WC4 334 aa4.32□□□□□ -1.72
VPS13C-205ENST00000558088 ZC3H7AQ8IWR0 971 aaKnown RBP4.32□□□□□ -1.72
VPS13C-205ENST00000558088 OR14K1Q8NGZ2 314 aa4.32□□□□□ -1.72
VPS13C-205ENST00000558088 WNK4Q96J92 1243 aa4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms