RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 PTK7Q13308 1070 aa16.1■□□□□ 0.17
USP3-205ENST00000557884 CTTNQ14247 550 aaKnown RBP16.1■□□□□ 0.17
USP3-205ENST00000557884 TMEM266Q2M3C6 531 aa16.1■□□□□ 0.17
USP3-205ENST00000557884 FOXD4L6Q3SYB3 417 aaPredicted RBP16.1■□□□□ 0.17
USP3-205ENST00000557884 FOXD4L3Q6VB84 417 aaPredicted RBP16.1■□□□□ 0.17
USP3-205ENST00000557884 RUFY4Q6ZNE9 571 aa16.1■□□□□ 0.17
USP3-205ENST00000557884 FAM167AQ96KS9 214 aa16.1■□□□□ 0.17
USP3-205ENST00000557884 EIF2AK1Q9BQI3 630 aaKnown RBP16.1■□□□□ 0.17
USP3-205ENST00000557884 LXNQ9BS40 222 aa16.1■□□□□ 0.17
USP3-205ENST00000557884 ZSCAN16Q9H4T2 348 aaPredicted RBP16.1■□□□□ 0.17
USP3-205ENST00000557884 WRAP73Q9P2S5 460 aaPredicted RBP16.1■□□□□ 0.17
USP3-205ENST00000557884 SEPT9Q9UHD8 586 aaPredicted RBP16.1■□□□□ 0.17
USP3-205ENST00000557884 TUBE1Q9UJT0 475 aa16.1■□□□□ 0.17
USP3-205ENST00000557884 RANBP2P49792 3224 aaKnown RBP16.09■□□□□ 0.17
USP3-205ENST00000557884 RRN3P2A6NIE6 340 aa16.09■□□□□ 0.17
USP3-205ENST00000557884 DDX11L8A8MPP1 907 aa16.09■□□□□ 0.17
USP3-205ENST00000557884 ZBTB42B2RXF5 422 aa16.09■□□□□ 0.17
USP3-205ENST00000557884 RBAK-RBAKDNI3L0D1 243 aa16.09■□□□□ 0.17
USP3-205ENST00000557884 PSMC5P62195 406 aa16.09■□□□□ 0.17
USP3-205ENST00000557884 ADAM17P78536 824 aa16.09■□□□□ 0.17
USP3-205ENST00000557884 ATP2C1P98194 919 aaPredicted RBP16.09■□□□□ 0.17
USP3-205ENST00000557884 CEBPZQ03701 1054 aaKnown RBP16.09■□□□□ 0.17
USP3-205ENST00000557884 BFSP2Q13515 415 aa16.09■□□□□ 0.17
USP3-205ENST00000557884 SF3A1Q15459 793 aaKnown RBP16.09■□□□□ 0.17
USP3-205ENST00000557884 IL17AQ16552 155 aa16.09■□□□□ 0.17
USP3-205ENST00000557884 MARCH8Q5T0T0 291 aa16.09■□□□□ 0.17
USP3-205ENST00000557884 PRPF38BQ5VTL8 546 aaKnown RBP16.09■□□□□ 0.17
USP3-205ENST00000557884 SERINC5Q86VE9 423 aa16.09■□□□□ 0.17
USP3-205ENST00000557884 TPH2Q8IWU9 490 aa16.09■□□□□ 0.17
USP3-205ENST00000557884 BBXQ8WY36 941 aaPredicted RBP16.09■□□□□ 0.17
USP3-205ENST00000557884 TNPO1Q92973 898 aaKnown RBP16.09■□□□□ 0.17
USP3-205ENST00000557884 SH2D3AQ9BRG2 576 aa16.09■□□□□ 0.17
USP3-205ENST00000557884 WNT8AQ9H1J5 351 aa16.09■□□□□ 0.17
USP3-205ENST00000557884 NRBP2Q9NSY0 501 aa16.09■□□□□ 0.17
USP3-205ENST00000557884 CLIC4Q9Y696 253 aa16.09■□□□□ 0.17
USP3-205ENST00000557884 LAD1O00515 517 aa16.08■□□□□ 0.16
USP3-205ENST00000557884 THPOP40225 353 aa16.08■□□□□ 0.16
USP3-205ENST00000557884 FXR2P51116 673 aaKnown RBP eCLIP16.08■□□□□ 0.16
USP3-205ENST00000557884 TRIM71Q2Q1W2 868 aaKnown RBP16.08■□□□□ 0.16
USP3-205ENST00000557884 ZNF484Q5JVG2 852 aa16.08■□□□□ 0.16
USP3-205ENST00000557884 PLA2G4FQ68DD2 849 aa16.08■□□□□ 0.16
USP3-205ENST00000557884 CHRDL2Q6WN34 429 aa16.08■□□□□ 0.16
USP3-205ENST00000557884 DTHD1Q6ZMT9 781 aa16.08■□□□□ 0.16
USP3-205ENST00000557884 CCDC155Q8N6L0 562 aa16.08■□□□□ 0.16
USP3-205ENST00000557884 SCLYQ96I15 445 aa16.08■□□□□ 0.16
USP3-205ENST00000557884 FAM49AQ9H0Q0 323 aaPredicted RBP16.08■□□□□ 0.16
USP3-205ENST00000557884 MBLAC1A4D2B0 266 aaPredicted RBP16.07■□□□□ 0.16
USP3-205ENST00000557884 VWA3AA6NCI4 1184 aa16.07■□□□□ 0.16
USP3-205ENST00000557884 PP2D1A8MPX8 630 aa16.07■□□□□ 0.16
USP3-205ENST00000557884 SLITRK3O94933 977 aa16.07■□□□□ 0.16
USP3-205ENST00000557884 STBD1O95210 358 aa16.07■□□□□ 0.16
USP3-205ENST00000557884 F13A1P00488 732 aa16.07■□□□□ 0.16
USP3-205ENST00000557884 CTSHP09668 335 aa16.07■□□□□ 0.16
USP3-205ENST00000557884 CKBP12277 381 aa16.07■□□□□ 0.16
USP3-205ENST00000557884 KLRC1P26715 233 aa16.07■□□□□ 0.16
USP3-205ENST00000557884 PRPHP41219 470 aa16.07■□□□□ 0.16
USP3-205ENST00000557884 MTERF2Q49AM1 385 aa16.07■□□□□ 0.16
USP3-205ENST00000557884 XKR3Q5GH77 459 aa16.07■□□□□ 0.16
USP3-205ENST00000557884 MFSD5Q6N075 450 aa16.07■□□□□ 0.16
USP3-205ENST00000557884 MTHFD1LQ6UB35 978 aa16.07■□□□□ 0.16
USP3-205ENST00000557884 RETREG2Q8NC44 543 aa16.07■□□□□ 0.16
USP3-205ENST00000557884 ERMNQ8TAM6 284 aa16.07■□□□□ 0.16
USP3-205ENST00000557884 CAGE1Q8TC20 777 aa16.07■□□□□ 0.16
USP3-205ENST00000557884 USP28Q96RU2 1077 aa16.07■□□□□ 0.16
USP3-205ENST00000557884 HSD17B14Q9BPX1 270 aa16.07■□□□□ 0.16
USP3-205ENST00000557884 ZSWIM4Q9H7M6 989 aa16.07■□□□□ 0.16
USP3-205ENST00000557884 DAXXQ9UER7 740 aaPredicted RBP16.07■□□□□ 0.16
USP3-205ENST00000557884 LRWD1Q9UFC0 647 aa16.07■□□□□ 0.16
USP3-205ENST00000557884 CEP131Q9UPN4 1083 aa16.07■□□□□ 0.16
USP3-205ENST00000557884 COL1A2P08123 1366 aa16.06■□□□□ 0.16
USP3-205ENST00000557884 A0A087WWV3 80 aa16.06■□□□□ 0.16
USP3-205ENST00000557884 PITPNM1O00562 1244 aa16.06■□□□□ 0.16
USP3-205ENST00000557884 ZBTB39O15060 712 aa16.06■□□□□ 0.16
USP3-205ENST00000557884 DKC1O60832 514 aaKnown RBP eCLIP16.06■□□□□ 0.16
USP3-205ENST00000557884 MED24O75448 989 aa16.06■□□□□ 0.16
USP3-205ENST00000557884 C22orf31O95567 290 aa16.06■□□□□ 0.16
USP3-205ENST00000557884 BMP15O95972 392 aa16.06■□□□□ 0.16
USP3-205ENST00000557884 PDIA4P13667 645 aaKnown RBP16.06■□□□□ 0.16
USP3-205ENST00000557884 CSF2RAP15509 400 aa16.06■□□□□ 0.16
USP3-205ENST00000557884 SELPP16109 830 aa16.06■□□□□ 0.16
USP3-205ENST00000557884 ANP32AP39687 249 aaKnown RBP16.06■□□□□ 0.16
USP3-205ENST00000557884 FPGSQ05932 587 aa16.06■□□□□ 0.16
USP3-205ENST00000557884 ZNF618Q5T7W0 954 aa16.06■□□□□ 0.16
USP3-205ENST00000557884 TAF2Q6P1X5 1199 aa16.06■□□□□ 0.16
USP3-205ENST00000557884 ANO5Q75V66 913 aa16.06■□□□□ 0.16
USP3-205ENST00000557884 TMEM199Q8N511 208 aa16.06■□□□□ 0.16
USP3-205ENST00000557884 NEK9Q8TD19 979 aa16.06■□□□□ 0.16
USP3-205ENST00000557884 DNAJB3Q8WWF6 145 aa16.06■□□□□ 0.16
USP3-205ENST00000557884 GDF15Q99988 308 aa16.06■□□□□ 0.16
USP3-205ENST00000557884 BRD1O95696 1058 aa16.05■□□□□ 0.16
USP3-205ENST00000557884 IQCF3P0C7M6 154 aa16.05■□□□□ 0.16
USP3-205ENST00000557884 SPATA31C1P0DKV0 1188 aa16.05■□□□□ 0.16
USP3-205ENST00000557884 ACRP10323 421 aa16.05■□□□□ 0.16
USP3-205ENST00000557884 MARCKSP29966 332 aaPredicted RBP16.05■□□□□ 0.16
USP3-205ENST00000557884 CDC25AP30304 524 aa16.05■□□□□ 0.16
USP3-205ENST00000557884 YWHABP31946 246 aaKnown RBP16.05■□□□□ 0.16
USP3-205ENST00000557884 CCT6AP40227 531 aaKnown RBP16.05■□□□□ 0.16
USP3-205ENST00000557884 EPHB4P54760 987 aa16.05■□□□□ 0.16
USP3-205ENST00000557884 NPEPPSP55786 919 aa16.05■□□□□ 0.16
USP3-205ENST00000557884 PTPAQ15257 358 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms