RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 FAM153AQ9UHL3 310 aa13.25□□□□□ -0.29
CCDC88C-211ENST00000556726 PLAAQ9Y263 795 aa13.25□□□□□ -0.29
CCDC88C-211ENST00000556726 UTP11Q9Y3A2 253 aaKnown RBP13.25□□□□□ -0.29
CCDC88C-211ENST00000556726 CNTNAP4Q9C0A0 1308 aa13.25□□□□□ -0.29
CCDC88C-211ENST00000556726 C21orf2O43822 256 aa13.25□□□□□ -0.29
CCDC88C-211ENST00000556726 DHX9Q08211 1270 aaKnown RBP13.25□□□□□ -0.29
CCDC88C-211ENST00000556726 PPP1R7Q15435 360 aa13.25□□□□□ -0.29
CCDC88C-211ENST00000556726 FAM102BQ5T8I3 360 aa13.25□□□□□ -0.29
CCDC88C-211ENST00000556726 CEP57Q86XR8 500 aa13.25□□□□□ -0.29
CCDC88C-211ENST00000556726 CCDC105Q8IYK2 499 aa13.25□□□□□ -0.29
CCDC88C-211ENST00000556726 SCFD1Q8WVM8 642 aa13.25□□□□□ -0.29
CCDC88C-211ENST00000556726 CRYBG1Q9Y4K1 1723 aa13.25□□□□□ -0.29
CCDC88C-211ENST00000556726 DAPK3O43293 454 aa13.24□□□□□ -0.29
CCDC88C-211ENST00000556726 UCHL3P15374 230 aa13.24□□□□□ -0.29
CCDC88C-211ENST00000556726 GCFC2P16383 781 aaKnown RBP13.24□□□□□ -0.29
CCDC88C-211ENST00000556726 AMPD2Q01433 879 aa13.24□□□□□ -0.29
CCDC88C-211ENST00000556726 PSMD2Q13200 908 aa13.24□□□□□ -0.29
CCDC88C-211ENST00000556726 TRIP13Q15645 432 aaPredicted RBP13.24□□□□□ -0.29
CCDC88C-211ENST00000556726 PAPD7Q5XG87 772 aaKnown RBP13.24□□□□□ -0.29
CCDC88C-211ENST00000556726 DPH6Q7L8W6 267 aa13.24□□□□□ -0.29
CCDC88C-211ENST00000556726 DAGLBQ8NCG7 672 aa13.24□□□□□ -0.29
CCDC88C-211ENST00000556726 CCDC26Q8TAB7 109 aa13.24□□□□□ -0.29
CCDC88C-211ENST00000556726 CCDC114Q96M63 670 aa13.24□□□□□ -0.29
CCDC88C-211ENST00000556726 ZIM3Q96PE6 472 aa13.24□□□□□ -0.29
CCDC88C-211ENST00000556726 NUCKS1Q9H1E3 243 aaKnown RBP13.24□□□□□ -0.29
CCDC88C-211ENST00000556726 KCNK9Q9NPC2 374 aa13.24□□□□□ -0.29
CCDC88C-211ENST00000556726 SWAP70Q9UH65 585 aa13.24□□□□□ -0.29
CCDC88C-211ENST00000556726 MKRN1Q9UHC7 482 aaKnown RBP13.24□□□□□ -0.29
CCDC88C-211ENST00000556726 DNAJC12Q9UKB3 198 aa13.24□□□□□ -0.29
CCDC88C-211ENST00000556726 RAB21Q9UL25 225 aa13.24□□□□□ -0.29
CCDC88C-211ENST00000556726 ABCB11O95342 1321 aa13.24□□□□□ -0.29
CCDC88C-211ENST00000556726 MAP2K7O14733 419 aa13.24□□□□□ -0.29
CCDC88C-211ENST00000556726 RAD51CO43502 376 aa13.24□□□□□ -0.29
CCDC88C-211ENST00000556726 PPP1R11O60927 126 aaPredicted RBP13.24□□□□□ -0.29
CCDC88C-211ENST00000556726 VIMP08670 466 aaKnown RBP13.24□□□□□ -0.29
CCDC88C-211ENST00000556726 FGRP09769 529 aa13.24□□□□□ -0.29
CCDC88C-211ENST00000556726 POLR2MP0CAP2 368 aa13.24□□□□□ -0.29
CCDC88C-211ENST00000556726 EIF2AK2P19525 551 aaKnown RBP13.24□□□□□ -0.29
CCDC88C-211ENST00000556726 BIRC3Q13489 604 aa13.24□□□□□ -0.29
CCDC88C-211ENST00000556726 COG2Q14746 738 aa13.24□□□□□ -0.29
CCDC88C-211ENST00000556726 DLGAP5Q15398 846 aa13.24□□□□□ -0.29
CCDC88C-211ENST00000556726 LRRC31Q6UY01 552 aa13.24□□□□□ -0.29
CCDC88C-211ENST00000556726 MIER3Q7Z3K6 550 aa13.24□□□□□ -0.29
CCDC88C-211ENST00000556726 HNRNPLLQ8WVV9 542 aaKnown RBP13.24□□□□□ -0.29
CCDC88C-211ENST00000556726 HAS1Q92839 578 aa13.24□□□□□ -0.29
CCDC88C-211ENST00000556726 CCDC17Q96LX7 622 aa13.24□□□□□ -0.29
CCDC88C-211ENST00000556726 EIF2AK1Q9BQI3 630 aaKnown RBP13.24□□□□□ -0.29
CCDC88C-211ENST00000556726 NOVA2Q9UNW9 492 aaKnown RBP13.24□□□□□ -0.29
CCDC88C-211ENST00000556726 PLEKHG2Q9H7P9 1386 aa13.24□□□□□ -0.29
CCDC88C-211ENST00000556726 ALDH1B1P30837 517 aa13.24□□□□□ -0.29
CCDC88C-211ENST00000556726 GTF2A1P52655 376 aaPredicted RBP13.24□□□□□ -0.29
CCDC88C-211ENST00000556726 SRLQ86TD4 932 aa13.24□□□□□ -0.29
CCDC88C-211ENST00000556726 CREG2Q8IUH2 290 aa13.24□□□□□ -0.29
CCDC88C-211ENST00000556726 TSEN2Q8NCE0 465 aaKnown RBP13.24□□□□□ -0.29
CCDC88C-211ENST00000556726 RUSC1Q9BVN2 902 aa13.24□□□□□ -0.29
CCDC88C-211ENST00000556726 RIOX1Q9H6W3 641 aa13.24□□□□□ -0.29
CCDC88C-211ENST00000556726 SNX24Q9Y343 169 aa13.24□□□□□ -0.29
CCDC88C-211ENST00000556726 PDIA5Q14554 519 aa13.23□□□□□ -0.29
CCDC88C-211ENST00000556726 ACER1Q8TDN7 264 aa13.23□□□□□ -0.29
CCDC88C-211ENST00000556726 TRIM51Q9BSJ1 452 aa13.23□□□□□ -0.29
CCDC88C-211ENST00000556726 TCHPQ9BT92 498 aa13.23□□□□□ -0.29
CCDC88C-211ENST00000556726 TLR10Q9BXR5 811 aa13.23□□□□□ -0.29
CCDC88C-211ENST00000556726 ATMINO43313 823 aaPredicted RBP13.23□□□□□ -0.29
CCDC88C-211ENST00000556726 NEFHP12036 1026 aa13.23□□□□□ -0.29
CCDC88C-211ENST00000556726 SHMT1P34896 483 aa13.23□□□□□ -0.29
CCDC88C-211ENST00000556726 FXR2P51116 673 aaKnown RBP eCLIP13.23□□□□□ -0.29
CCDC88C-211ENST00000556726 STAT2P52630 851 aa13.23□□□□□ -0.29
CCDC88C-211ENST00000556726 SLC18A3Q16572 532 aa13.23□□□□□ -0.29
CCDC88C-211ENST00000556726 SCLT1Q96NL6 688 aa13.23□□□□□ -0.29
CCDC88C-211ENST00000556726 FEZ2Q9UHY8 353 aaPredicted RBP13.23□□□□□ -0.29
CCDC88C-211ENST00000556726 CCPG1Q9ULG6 757 aa13.23□□□□□ -0.29
CCDC88C-211ENST00000556726 AFF2P51816 1311 aa13.23□□□□□ -0.29
CCDC88C-211ENST00000556726 TAF1P21675 1872 aa13.23□□□□□ -0.29
CCDC88C-211ENST00000556726 PGRMC1O00264 195 aaKnown RBP13.22□□□□□ -0.29
CCDC88C-211ENST00000556726 AKAP3O75969 853 aa13.22□□□□□ -0.29
CCDC88C-211ENST00000556726 DDR1Q08345 913 aa13.22□□□□□ -0.29
CCDC88C-211ENST00000556726 KCNMA1Q12791 1236 aa13.22□□□□□ -0.29
CCDC88C-211ENST00000556726 DRAP1Q14919 205 aaPredicted RBP13.22□□□□□ -0.29
CCDC88C-211ENST00000556726 RC3H1Q5TC82 1133 aaKnown RBP13.22□□□□□ -0.29
CCDC88C-211ENST00000556726 BARGINQ6ZT62 677 aa13.22□□□□□ -0.29
CCDC88C-211ENST00000556726 PARVGQ9HBI0 331 aa13.22□□□□□ -0.29
CCDC88C-211ENST00000556726 MLXIPLQ9NP71 852 aa13.22□□□□□ -0.29
CCDC88C-211ENST00000556726 TSKSQ9UJT2 592 aa13.22□□□□□ -0.29
CCDC88C-211ENST00000556726 SIK3Q9Y2K2 1263 aa13.22□□□□□ -0.29
CCDC88C-211ENST00000556726 TTI1O43156 1089 aa13.22□□□□□ -0.29
CCDC88C-211ENST00000556726 PPFIA4O75335 1185 aa13.22□□□□□ -0.29
CCDC88C-211ENST00000556726 NR1D1P20393 614 aa13.22□□□□□ -0.29
CCDC88C-211ENST00000556726 MYL7Q01449 175 aa13.22□□□□□ -0.29
CCDC88C-211ENST00000556726 GOLGA8KD6RF30 607 aa13.22□□□□□ -0.29
CCDC88C-211ENST00000556726 SART1O43290 800 aaKnown RBP13.22□□□□□ -0.29
CCDC88C-211ENST00000556726 ECE2O60344 883 aa13.22□□□□□ -0.29
CCDC88C-211ENST00000556726 PSMC2P35998 433 aaKnown RBP13.22□□□□□ -0.29
CCDC88C-211ENST00000556726 PLCB3Q01970 1234 aa13.22□□□□□ -0.29
CCDC88C-211ENST00000556726 XKR9Q5GH70 373 aa13.22□□□□□ -0.29
CCDC88C-211ENST00000556726 KLHDC7AQ5VTJ3 777 aa13.22□□□□□ -0.29
CCDC88C-211ENST00000556726 CCDC121Q6ZUS5 278 aa13.22□□□□□ -0.29
CCDC88C-211ENST00000556726 ANKRD42Q8N9B4 389 aa13.22□□□□□ -0.29
CCDC88C-211ENST00000556726 CABS1Q96KC9 395 aa13.22□□□□□ -0.29
CCDC88C-211ENST00000556726 GJD4Q96KN9 370 aaPredicted RBP13.22□□□□□ -0.29
CCDC88C-211ENST00000556726 EHMT1Q9H9B1 1298 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms