RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 TLE6Q9H808 572 aa14.51□□□□□ -0.09
SHMT2-223ENST00000556689 TAF6LQ9Y6J9 622 aa14.51□□□□□ -0.09
SHMT2-223ENST00000556689 IGSF9BQ9UPX0 1349 aa14.5□□□□□ -0.09
SHMT2-223ENST00000556689 TTC3P53804 2025 aa14.5□□□□□ -0.09
SHMT2-223ENST00000556689 SPDYE3A6NKU9 549 aa14.5□□□□□ -0.09
SHMT2-223ENST00000556689 TMEM62Q0P6H9 643 aa14.5□□□□□ -0.09
SHMT2-223ENST00000556689 CBX2Q14781 532 aaPredicted RBP14.5□□□□□ -0.09
SHMT2-223ENST00000556689 FAM43BQ6ZT52 329 aaPredicted RBP14.5□□□□□ -0.09
SHMT2-223ENST00000556689 PLPPR4Q7Z2D5 763 aa14.5□□□□□ -0.09
SHMT2-223ENST00000556689 TMTC2Q8N394 836 aa14.5□□□□□ -0.09
SHMT2-223ENST00000556689 PRSS33Q8NF86 280 aa14.5□□□□□ -0.09
SHMT2-223ENST00000556689 PCYT2Q99447 389 aa14.5□□□□□ -0.09
SHMT2-223ENST00000556689 PHF7Q9BWX1 381 aaPredicted RBP14.5□□□□□ -0.09
SHMT2-223ENST00000556689 LY9Q9HBG7 655 aa14.5□□□□□ -0.09
SHMT2-223ENST00000556689 JPH1Q9HDC5 661 aaPredicted RBP14.5□□□□□ -0.09
SHMT2-223ENST00000556689 RNF216Q9NWF9 866 aaPredicted RBP14.5□□□□□ -0.09
SHMT2-223ENST00000556689 SLC9A2Q9UBY0 812 aa14.5□□□□□ -0.09
SHMT2-223ENST00000556689 PCDHA6Q9UN73 950 aa14.5□□□□□ -0.09
SHMT2-223ENST00000556689 TRPC6Q9Y210 931 aa14.5□□□□□ -0.09
SHMT2-223ENST00000556689 USP15Q9Y4E8 981 aaPredicted RBP14.5□□□□□ -0.09
SHMT2-223ENST00000556689 PCDHB7Q9Y5E2 793 aa14.5□□□□□ -0.09
SHMT2-223ENST00000556689 PCDHB12Q9Y5F1 795 aa14.5□□□□□ -0.09
SHMT2-223ENST00000556689 PCDHA8Q9Y5H6 950 aa14.5□□□□□ -0.09
SHMT2-223ENST00000556689 PER2O15055 1255 aa14.49□□□□□ -0.09
SHMT2-223ENST00000556689 GLP2RO95838 553 aa14.49□□□□□ -0.09
SHMT2-223ENST00000556689 CHMLP26374 656 aa14.49□□□□□ -0.09
SHMT2-223ENST00000556689 SARSP49591 514 aaKnown RBP14.49□□□□□ -0.09
SHMT2-223ENST00000556689 GATMP50440 423 aa14.49□□□□□ -0.09
SHMT2-223ENST00000556689 STAT5BP51692 787 aa14.49□□□□□ -0.09
SHMT2-223ENST00000556689 KRT76Q01546 638 aa14.49□□□□□ -0.09
SHMT2-223ENST00000556689 UBE3AQ05086 875 aa14.49□□□□□ -0.09
SHMT2-223ENST00000556689 NFX1Q12986 1120 aaKnown RBP14.49□□□□□ -0.09
SHMT2-223ENST00000556689 UBE2SQ16763 222 aa14.49□□□□□ -0.09
SHMT2-223ENST00000556689 SPOUT1Q5T280 376 aaKnown RBP14.49□□□□□ -0.09
SHMT2-223ENST00000556689 TTC22Q5TAA0 569 aa14.49□□□□□ -0.09
SHMT2-223ENST00000556689 CASC1Q6TDU7 716 aa14.49□□□□□ -0.09
SHMT2-223ENST00000556689 NFXL1Q6ZNB6 911 aa14.49□□□□□ -0.09
SHMT2-223ENST00000556689 MB21D2Q8IYB1 491 aaPredicted RBP14.49□□□□□ -0.09
SHMT2-223ENST00000556689 FBXL6Q8N531 539 aa14.49□□□□□ -0.09
SHMT2-223ENST00000556689 RPGRIP1Q96KN7 1286 aa14.49□□□□□ -0.09
SHMT2-223ENST00000556689 MTA3Q9BTC8 594 aa14.49□□□□□ -0.09
SHMT2-223ENST00000556689 TMX1Q9H3N1 280 aa14.49□□□□□ -0.09
SHMT2-223ENST00000556689 AAASQ9NRG9 546 aa14.49□□□□□ -0.09
SHMT2-223ENST00000556689 BARX2Q9UMQ3 279 aaPredicted RBP14.49□□□□□ -0.09
SHMT2-223ENST00000556689 KDM3AQ9Y4C1 1321 aa14.48□□□□□ -0.09
SHMT2-223ENST00000556689 KAT6AQ92794 2004 aa14.48□□□□□ -0.09
SHMT2-223ENST00000556689 SMIM35A0A1B0GVV1 85 aa14.48□□□□□ -0.09
SHMT2-223ENST00000556689 PLEKHA8P1O95397 391 aa14.48□□□□□ -0.09
SHMT2-223ENST00000556689 GSPT1P15170 499 aaKnown RBP14.48□□□□□ -0.09
SHMT2-223ENST00000556689 IBSPP21815 317 aaPredicted RBP14.48□□□□□ -0.09
SHMT2-223ENST00000556689 PLCB4Q15147 1175 aa14.48□□□□□ -0.09
SHMT2-223ENST00000556689 CMTR1Q8N1G2 835 aaKnown RBP14.48□□□□□ -0.09
SHMT2-223ENST00000556689 TRAPPC12Q8WVT3 735 aa14.48□□□□□ -0.09
SHMT2-223ENST00000556689 MAP4K1Q92918 833 aa14.48□□□□□ -0.09
SHMT2-223ENST00000556689 CDCA3Q99618 268 aaPredicted RBP14.48□□□□□ -0.09
SHMT2-223ENST00000556689 MXRA8Q9BRK3 442 aa14.48□□□□□ -0.09
SHMT2-223ENST00000556689 SDF4Q9BRK5 362 aa14.48□□□□□ -0.09
SHMT2-223ENST00000556689 KCNH7Q9NS40 1196 aa14.48□□□□□ -0.09
SHMT2-223ENST00000556689 PCDHGC5Q9Y5F6 944 aa14.48□□□□□ -0.09
SHMT2-223ENST00000556689 FSD2A1L4K1 749 aa14.47□□□□□ -0.09
SHMT2-223ENST00000556689 CCDC69A6NI79 296 aa14.47□□□□□ -0.09
SHMT2-223ENST00000556689 ST18O60284 1047 aa14.47□□□□□ -0.09
SHMT2-223ENST00000556689 CALM1P0DP23 149 aa14.47□□□□□ -0.09
SHMT2-223ENST00000556689 CALM2P0DP24 149 aa14.47□□□□□ -0.09
SHMT2-223ENST00000556689 CALM3P0DP25 149 aa14.47□□□□□ -0.09
SHMT2-223ENST00000556689 ATF7P17544 494 aaPredicted RBP14.47□□□□□ -0.09
SHMT2-223ENST00000556689 KLRC1P26715 233 aa14.47□□□□□ -0.09
SHMT2-223ENST00000556689 ACTR2P61160 394 aa14.47□□□□□ -0.09
SHMT2-223ENST00000556689 SIGLEC14Q08ET2 396 aa14.47□□□□□ -0.09
SHMT2-223ENST00000556689 TMEM266Q2M3C6 531 aa14.47□□□□□ -0.09
SHMT2-223ENST00000556689 ODR4Q5SWX8 454 aa14.47□□□□□ -0.09
SHMT2-223ENST00000556689 PDE12Q6L8Q7 609 aaKnown RBP14.47□□□□□ -0.09
SHMT2-223ENST00000556689 MTHFD1LQ6UB35 978 aa14.47□□□□□ -0.09
SHMT2-223ENST00000556689 CCDC82Q8N4S0 544 aa14.47□□□□□ -0.09
SHMT2-223ENST00000556689 ATP8B4Q8TF62 1192 aa14.47□□□□□ -0.09
SHMT2-223ENST00000556689 TLR9Q9NR96 1032 aa14.47□□□□□ -0.09
SHMT2-223ENST00000556689 DOCK5Q9H7D0 1870 aa14.46□□□□□ -0.09
SHMT2-223ENST00000556689 NFASCO94856 1347 aa14.46□□□□□ -0.09
SHMT2-223ENST00000556689 hCG_1642624A0A1W2PR95 340 aa14.46□□□□□ -0.09
SHMT2-223ENST00000556689 DENND3A2RUS2 1198 aa14.46□□□□□ -0.09
SHMT2-223ENST00000556689 TBKBP1A7MCY6 615 aa14.46□□□□□ -0.09
SHMT2-223ENST00000556689 PRC1O43663 620 aa14.46□□□□□ -0.09
SHMT2-223ENST00000556689 RPS6KA5O75582 802 aa14.46□□□□□ -0.09
SHMT2-223ENST00000556689 FGF18O76093 207 aa14.46□□□□□ -0.09
SHMT2-223ENST00000556689 MCM5P33992 734 aa14.46□□□□□ -0.09
SHMT2-223ENST00000556689 SLC26A2P50443 739 aa14.46□□□□□ -0.09
SHMT2-223ENST00000556689 TCF15Q12870 199 aa14.46□□□□□ -0.09
SHMT2-223ENST00000556689 DUSP6Q16828 381 aa14.46□□□□□ -0.09
SHMT2-223ENST00000556689 FAM102BQ5T8I3 360 aa14.46□□□□□ -0.09
SHMT2-223ENST00000556689 SLC24A5Q71RS6 500 aa14.46□□□□□ -0.09
SHMT2-223ENST00000556689 EXOC6Q8TAG9 804 aa14.46□□□□□ -0.09
SHMT2-223ENST00000556689 CYP2W1Q8TAV3 490 aa14.46□□□□□ -0.09
SHMT2-223ENST00000556689 SUSD6Q92537 303 aa14.46□□□□□ -0.09
SHMT2-223ENST00000556689 TMEM87BQ96K49 555 aa14.46□□□□□ -0.09
SHMT2-223ENST00000556689 NEK1Q96PY6 1258 aa14.46□□□□□ -0.09
SHMT2-223ENST00000556689 ADAM2Q99965 735 aa14.46□□□□□ -0.09
SHMT2-223ENST00000556689 IRF2BPLQ9H1B7 796 aa14.46□□□□□ -0.09
SHMT2-223ENST00000556689 ERVK-5Q9HDB9 667 aa14.46□□□□□ -0.09
SHMT2-223ENST00000556689 RGS18Q9NS28 235 aa14.46□□□□□ -0.09
SHMT2-223ENST00000556689 C1orf112Q9NSG2 853 aa14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms