RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 F2P00734 622 aa11.62□□□□□ -0.55
SCFD1-220ENST00000556486 VCPP55072 806 aaKnown RBP11.62□□□□□ -0.55
SCFD1-220ENST00000556486 COL19A1Q14993 1142 aa11.62□□□□□ -0.55
SCFD1-220ENST00000556486 PLEKHG4Q58EX7 1191 aa11.62□□□□□ -0.55
SCFD1-220ENST00000556486 ADGRF4Q8IZF3 695 aa11.62□□□□□ -0.55
SCFD1-220ENST00000556486 EDAQ92838 391 aa11.62□□□□□ -0.55
SCFD1-220ENST00000556486 MTMR8Q96EF0 704 aa11.62□□□□□ -0.55
SCFD1-220ENST00000556486 ZKSCAN3Q9BRR0 538 aa11.62□□□□□ -0.55
SCFD1-220ENST00000556486 KAT14Q9H8E8 782 aa11.62□□□□□ -0.55
SCFD1-220ENST00000556486 CNNM2Q9H8M5 875 aa11.62□□□□□ -0.55
SCFD1-220ENST00000556486 MAP3K20Q9NYL2 800 aaKnown RBP11.62□□□□□ -0.55
SCFD1-220ENST00000556486 ZSWIM5Q9P217 1185 aa11.62□□□□□ -0.55
SCFD1-220ENST00000556486 DDX41Q9UJV9 622 aaKnown RBP11.62□□□□□ -0.55
SCFD1-220ENST00000556486 SUPT16HQ9Y5B9 1047 aaKnown RBP11.62□□□□□ -0.55
SCFD1-220ENST00000556486 MRVI1Q9Y6F6 885 aa11.62□□□□□ -0.55
SCFD1-220ENST00000556486 KIAA1671Q9BY89 1806 aa11.62□□□□□ -0.55
SCFD1-220ENST00000556486 B4E1Z4 1266 aa11.61□□□□□ -0.55
SCFD1-220ENST00000556486 HAS3O00219 553 aa11.61□□□□□ -0.55
SCFD1-220ENST00000556486 IGHDP01880 384 aa11.61□□□□□ -0.55
SCFD1-220ENST00000556486 MYCLP12524 364 aaPredicted RBP11.61□□□□□ -0.55
SCFD1-220ENST00000556486 HOXD8P13378 290 aaPredicted RBP11.61□□□□□ -0.55
SCFD1-220ENST00000556486 STXBP2Q15833 593 aa11.61□□□□□ -0.55
SCFD1-220ENST00000556486 IMMTQ16891 758 aaKnown RBP11.61□□□□□ -0.55
SCFD1-220ENST00000556486 QRICH1Q2TAL8 776 aa11.61□□□□□ -0.55
SCFD1-220ENST00000556486 CWC27Q6UX04 472 aaKnown RBP11.61□□□□□ -0.55
SCFD1-220ENST00000556486 TRIM67Q6ZTA4 783 aa11.61□□□□□ -0.55
SCFD1-220ENST00000556486 SERINC5Q86VE9 423 aa11.61□□□□□ -0.55
SCFD1-220ENST00000556486 SUGP1Q8IWZ8 645 aaKnown RBP11.61□□□□□ -0.55
SCFD1-220ENST00000556486 FIBCD1Q8N539 461 aa11.61□□□□□ -0.55
SCFD1-220ENST00000556486 SAMD3Q8N6K7 520 aa11.61□□□□□ -0.55
SCFD1-220ENST00000556486 ATP6V0A1Q93050 837 aa11.61□□□□□ -0.55
SCFD1-220ENST00000556486 TOP1MTQ969P6 601 aa11.61□□□□□ -0.55
SCFD1-220ENST00000556486 SAMD11Q96NU1 681 aa11.61□□□□□ -0.55
SCFD1-220ENST00000556486 RMDN3Q96TC7 470 aa11.61□□□□□ -0.55
SCFD1-220ENST00000556486 KATNAL1Q9BW62 490 aa11.61□□□□□ -0.55
SCFD1-220ENST00000556486 KRT23Q9C075 422 aa11.61□□□□□ -0.55
SCFD1-220ENST00000556486 BCAS3Q9H6U6 928 aa11.61□□□□□ -0.55
SCFD1-220ENST00000556486 JMJD4Q9H9V9 463 aa11.61□□□□□ -0.55
SCFD1-220ENST00000556486 ALG13Q9NP73 1137 aaKnown RBP11.61□□□□□ -0.55
SCFD1-220ENST00000556486 DIAPH3Q9NSV4 1193 aa11.61□□□□□ -0.55
SCFD1-220ENST00000556486 CD207Q9UJ71 328 aa11.61□□□□□ -0.55
SCFD1-220ENST00000556486 MRPL11Q9Y3B7 192 aaKnown RBP11.61□□□□□ -0.55
SCFD1-220ENST00000556486 EMSYQ7Z589 1322 aa11.6□□□□□ -0.55
SCFD1-220ENST00000556486 SPTBN4Q9H254 2564 aa11.6□□□□□ -0.55
SCFD1-220ENST00000556486 PLXNA3P51805 1871 aa11.6□□□□□ -0.55
SCFD1-220ENST00000556486 OPLAHO14841 1288 aa11.6□□□□□ -0.55
SCFD1-220ENST00000556486 TREHO43280 583 aa11.6□□□□□ -0.55
SCFD1-220ENST00000556486 ACTN4O43707 911 aaKnown RBP11.6□□□□□ -0.55
SCFD1-220ENST00000556486 EIF3JO75822 258 aaKnown RBP11.6□□□□□ -0.55
SCFD1-220ENST00000556486 PARP1P09874 1014 aaKnown RBP11.6□□□□□ -0.55
SCFD1-220ENST00000556486 NDUFV1P49821 464 aa11.6□□□□□ -0.55
SCFD1-220ENST00000556486 HSD17B4P51659 736 aa11.6□□□□□ -0.55
SCFD1-220ENST00000556486 SMAD4Q13485 552 aaKnown RBP11.6□□□□□ -0.55
SCFD1-220ENST00000556486 SEC23AQ15436 765 aa11.6□□□□□ -0.55
SCFD1-220ENST00000556486 CTC1Q2NKJ3 1217 aa11.6□□□□□ -0.55
SCFD1-220ENST00000556486 HSDL1Q3SXM5 330 aa11.6□□□□□ -0.55
SCFD1-220ENST00000556486 ARHGEF16Q5VV41 709 aa11.6□□□□□ -0.55
SCFD1-220ENST00000556486 ADGRD2Q7Z7M1 963 aa11.6□□□□□ -0.55
SCFD1-220ENST00000556486 DEPDC4Q8N2C3 294 aa11.6□□□□□ -0.55
SCFD1-220ENST00000556486 PPTC7Q8NI37 304 aa11.6□□□□□ -0.55
SCFD1-220ENST00000556486 FAM174AQ8TBP5 190 aa11.6□□□□□ -0.55
SCFD1-220ENST00000556486 SEPT8Q92599 483 aa11.6□□□□□ -0.55
SCFD1-220ENST00000556486 ATOH1Q92858 354 aaPredicted RBP11.6□□□□□ -0.55
SCFD1-220ENST00000556486 GPKOWQ92917 476 aaPredicted RBP eCLIP11.6□□□□□ -0.55
SCFD1-220ENST00000556486 SPATA33Q96N06 139 aa11.6□□□□□ -0.55
SCFD1-220ENST00000556486 POP1Q99575 1024 aaKnown RBP11.6□□□□□ -0.55
SCFD1-220ENST00000556486 PCDHGC5Q9Y5F6 944 aa11.6□□□□□ -0.55
SCFD1-220ENST00000556486 VPS13AQ96RL7 3174 aa11.6□□□□□ -0.55
SCFD1-220ENST00000556486 COL4A6Q14031 1691 aa11.59□□□□□ -0.55
SCFD1-220ENST00000556486 C17orf102A2RUQ5 167 aa11.59□□□□□ -0.55
SCFD1-220ENST00000556486 H0Y858 1186 aa11.59□□□□□ -0.55
SCFD1-220ENST00000556486 GGPS1O95749 300 aa11.59□□□□□ -0.55
SCFD1-220ENST00000556486 SMIM10L2AP0DMW4 78 aa11.59□□□□□ -0.55
SCFD1-220ENST00000556486 SMIM10L2BP0DMW5 78 aa11.59□□□□□ -0.55
SCFD1-220ENST00000556486 SP100P23497 879 aaPredicted RBP11.59□□□□□ -0.55
SCFD1-220ENST00000556486 SP2Q02086 613 aa11.59□□□□□ -0.55
SCFD1-220ENST00000556486 LAMC2Q13753 1193 aa11.59□□□□□ -0.55
SCFD1-220ENST00000556486 STOX1Q6ZVD7 989 aa11.59□□□□□ -0.55
SCFD1-220ENST00000556486 RBM23Q86U06 439 aaKnown RBP11.59□□□□□ -0.55
SCFD1-220ENST00000556486 IL17RAQ96F46 866 aa11.59□□□□□ -0.55
SCFD1-220ENST00000556486 UBAC1Q9BSL1 405 aa11.59□□□□□ -0.55
SCFD1-220ENST00000556486 AMNQ9BXJ7 453 aa11.59□□□□□ -0.55
SCFD1-220ENST00000556486 VAT1LQ9HCJ6 419 aa11.59□□□□□ -0.55
SCFD1-220ENST00000556486 PXMP2Q9NR77 195 aa11.59□□□□□ -0.55
SCFD1-220ENST00000556486 TLR9Q9NR96 1032 aa11.59□□□□□ -0.55
SCFD1-220ENST00000556486 ZDBF2Q9HCK1 2354 aa11.59□□□□□ -0.55
SCFD1-220ENST00000556486 DMDP11532 3685 aa11.58□□□□□ -0.56
SCFD1-220ENST00000556486 DHX16O60231 1041 aaKnown RBP11.58□□□□□ -0.56
SCFD1-220ENST00000556486 RGS20O76081 388 aa11.58□□□□□ -0.56
SCFD1-220ENST00000556486 F12P00748 615 aaPredicted RBP11.58□□□□□ -0.56
SCFD1-220ENST00000556486 CFBP00751 764 aa11.58□□□□□ -0.56
SCFD1-220ENST00000556486 PDGFBP01127 241 aaPredicted RBP11.58□□□□□ -0.56
SCFD1-220ENST00000556486 NR3C2P08235 984 aa11.58□□□□□ -0.56
SCFD1-220ENST00000556486 LINC00271P0C7V0 271 aa11.58□□□□□ -0.56
SCFD1-220ENST00000556486 TGFB3P10600 412 aa11.58□□□□□ -0.56
SCFD1-220ENST00000556486 IBSPP21815 317 aaPredicted RBP11.58□□□□□ -0.56
SCFD1-220ENST00000556486 ZXDAP98168 799 aa11.58□□□□□ -0.56
SCFD1-220ENST00000556486 RBM10P98175 930 aaKnown RBP11.58□□□□□ -0.56
SCFD1-220ENST00000556486 TRAF1Q13077 416 aa11.58□□□□□ -0.56
SCFD1-220ENST00000556486 CRTC2Q53ET0 693 aaPredicted RBP11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms