RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 CARD11Q9BXL7 1154 aa7.66□□□□□ -1.18
PRPF39-209ENST00000556353 CELF4Q9BZC1 486 aaKnown RBP7.66□□□□□ -1.18
PRPF39-209ENST00000556353 OSBPL2Q9H1P3 480 aa7.66□□□□□ -1.18
PRPF39-209ENST00000556353 SLC4A7Q9Y6M7 1214 aa7.66□□□□□ -1.18
PRPF39-209ENST00000556353 CNOT4O95628 575 aaKnown RBP7.65□□□□□ -1.18
PRPF39-209ENST00000556353 ICAM4Q14773 271 aa7.65□□□□□ -1.18
PRPF39-209ENST00000556353 BRAPQ7Z569 592 aa7.65□□□□□ -1.18
PRPF39-209ENST00000556353 SCLYQ96I15 445 aa7.65□□□□□ -1.18
PRPF39-209ENST00000556353 MEGF9Q9H1U4 602 aa7.65□□□□□ -1.18
PRPF39-209ENST00000556353 SEC61A2Q9H9S3 476 aa7.65□□□□□ -1.18
PRPF39-209ENST00000556353 GALNT8Q9NY28 637 aa7.65□□□□□ -1.18
PRPF39-209ENST00000556353 SCDO00767 359 aa7.64□□□□□ -1.19
PRPF39-209ENST00000556353 ZNF888P0CJ79 500 aaPredicted RBP7.64□□□□□ -1.19
PRPF39-209ENST00000556353 TOP3AQ13472 1001 aaPredicted RBP7.64□□□□□ -1.19
PRPF39-209ENST00000556353 NFE2L2Q16236 605 aa7.64□□□□□ -1.19
PRPF39-209ENST00000556353 NOSTRINQ8IVI9 506 aa7.64□□□□□ -1.19
PRPF39-209ENST00000556353 LILRB2Q8N423 598 aa7.64□□□□□ -1.19
PRPF39-209ENST00000556353 DNERQ8NFT8 737 aa7.64□□□□□ -1.19
PRPF39-209ENST00000556353 WDR48Q8TAF3 677 aa7.64□□□□□ -1.19
PRPF39-209ENST00000556353 BTBD7Q9P203 1132 aa7.64□□□□□ -1.19
PRPF39-209ENST00000556353 TCRBV16S1A1N1A0A5B0 115 aa7.63□□□□□ -1.19
PRPF39-209ENST00000556353 C1QTNF3-AMACRE9PGA6 284 aa7.63□□□□□ -1.19
PRPF39-209ENST00000556353 KCNQ2O43526 872 aa7.63□□□□□ -1.19
PRPF39-209ENST00000556353 NPTXRO95502 500 aa7.63□□□□□ -1.19
PRPF39-209ENST00000556353 MC4RP32245 332 aa7.63□□□□□ -1.19
PRPF39-209ENST00000556353 SEC23AQ15436 765 aa7.63□□□□□ -1.19
PRPF39-209ENST00000556353 CXXC5Q7LFL8 322 aaKnown RBP7.63□□□□□ -1.19
PRPF39-209ENST00000556353 LMF1Q96S06 567 aa7.63□□□□□ -1.19
PRPF39-209ENST00000556353 DEF6Q9H4E7 631 aa7.63□□□□□ -1.19
PRPF39-209ENST00000556353 NCOA5Q9HCD5 579 aaKnown RBP7.63□□□□□ -1.19
PRPF39-209ENST00000556353 CD248Q9HCU0 757 aa7.63□□□□□ -1.19
PRPF39-209ENST00000556353 KCNH7Q9NS40 1196 aa7.63□□□□□ -1.19
PRPF39-209ENST00000556353 FBXO10Q9UK96 956 aa7.63□□□□□ -1.19
PRPF39-209ENST00000556353 CDK11AQ9UQ88 783 aaPredicted RBP7.63□□□□□ -1.19
PRPF39-209ENST00000556353 PTPN22Q9Y2R2 807 aa7.63□□□□□ -1.19
PRPF39-209ENST00000556353 SLC12A8A0AV02 714 aa7.62□□□□□ -1.19
PRPF39-209ENST00000556353 MMEP08473 750 aa7.62□□□□□ -1.19
PRPF39-209ENST00000556353 IL13RA1P78552 427 aa7.62□□□□□ -1.19
PRPF39-209ENST00000556353 BMS1Q14692 1282 aaKnown RBP7.62□□□□□ -1.19
PRPF39-209ENST00000556353 ZMAT1Q5H9K5 638 aa7.62□□□□□ -1.19
PRPF39-209ENST00000556353 OVCH1Q7RTY7 1134 aa7.62□□□□□ -1.19
PRPF39-209ENST00000556353 FGD2Q7Z6J4 655 aa7.62□□□□□ -1.19
PRPF39-209ENST00000556353 LRRC37BQ96QE4 947 aa7.62□□□□□ -1.19
PRPF39-209ENST00000556353 BTBD2Q9BX70 525 aa7.62□□□□□ -1.19
PRPF39-209ENST00000556353 KLC2Q9H0B6 622 aa7.62□□□□□ -1.19
PRPF39-209ENST00000556353 PATE3B3GLJ2 98 aa7.61□□□□□ -1.19
PRPF39-209ENST00000556353 HIP1RO75146 1068 aa7.61□□□□□ -1.19
PRPF39-209ENST00000556353 ETV4P43268 484 aa7.61□□□□□ -1.19
PRPF39-209ENST00000556353 C2orf69Q8N8R5 385 aa7.61□□□□□ -1.19
PRPF39-209ENST00000556353 IGSF22Q8N9C0 903 aa7.61□□□□□ -1.19
PRPF39-209ENST00000556353 WNK4Q96J92 1243 aa7.61□□□□□ -1.19
PRPF39-209ENST00000556353 SCYL1Q96KG9 808 aa7.61□□□□□ -1.19
PRPF39-209ENST00000556353 CDK5RAP1Q96SZ6 601 aaKnown RBP7.61□□□□□ -1.19
PRPF39-209ENST00000556353 TRIM39Q9HCM9 518 aa7.61□□□□□ -1.19
PRPF39-209ENST00000556353 UCKL1Q9NWZ5 548 aa7.61□□□□□ -1.19
PRPF39-209ENST00000556353 TCAF1Q9Y4C2 921 aa7.61□□□□□ -1.19
PRPF39-209ENST00000556353 PLD2O14939 933 aa7.6□□□□□ -1.19
PRPF39-209ENST00000556353 FOXP2O15409 715 aa7.6□□□□□ -1.19
PRPF39-209ENST00000556353 MPIG6BO95866 241 aa7.6□□□□□ -1.19
PRPF39-209ENST00000556353 ADCY8P40145 1251 aa7.6□□□□□ -1.19
PRPF39-209ENST00000556353 ECE1P42892 770 aa7.6□□□□□ -1.19
PRPF39-209ENST00000556353 RAC3P60763 192 aa7.6□□□□□ -1.19
PRPF39-209ENST00000556353 STILQ15468 1287 aa7.6□□□□□ -1.19
PRPF39-209ENST00000556353 TM4SF20Q53R12 229 aa7.6□□□□□ -1.19
PRPF39-209ENST00000556353 TMEM177Q53S58 311 aa7.6□□□□□ -1.19
PRPF39-209ENST00000556353 ABHD17CQ6PCB6 329 aa7.6□□□□□ -1.19
PRPF39-209ENST00000556353 GIMAP8Q8ND71 665 aaPredicted RBP7.6□□□□□ -1.19
PRPF39-209ENST00000556353 HIPK4Q8NE63 616 aa7.6□□□□□ -1.19
PRPF39-209ENST00000556353 ASB15Q8WXK1 588 aa7.6□□□□□ -1.19
PRPF39-209ENST00000556353 GNRHR2Q96P88 292 aa7.6□□□□□ -1.19
PRPF39-209ENST00000556353 GBP4Q96PP9 640 aa7.6□□□□□ -1.19
PRPF39-209ENST00000556353 AMNQ9BXJ7 453 aa7.6□□□□□ -1.19
PRPF39-209ENST00000556353 KRTAP4-5Q9BYR2 181 aa7.6□□□□□ -1.19
PRPF39-209ENST00000556353 ZDHHC5Q9C0B5 715 aa7.6□□□□□ -1.19
PRPF39-209ENST00000556353 TSC22D4Q9Y3Q8 395 aa7.6□□□□□ -1.19
PRPF39-209ENST00000556353 B3GALT1Q9Y5Z6 326 aa7.6□□□□□ -1.19
PRPF39-209ENST00000556353 ZNF623O75123 536 aa7.59□□□□□ -1.19
PRPF39-209ENST00000556353 RAPGEF3O95398 923 aa7.59□□□□□ -1.19
PRPF39-209ENST00000556353 HMGCRP04035 888 aa7.59□□□□□ -1.19
PRPF39-209ENST00000556353 KCNA6P17658 529 aa7.59□□□□□ -1.19
PRPF39-209ENST00000556353 SELENOPP49908 381 aa7.59□□□□□ -1.19
PRPF39-209ENST00000556353 KCNQ1P51787 676 aa7.59□□□□□ -1.19
PRPF39-209ENST00000556353 RRADP55042 308 aa7.59□□□□□ -1.19
PRPF39-209ENST00000556353 FSTL4Q6MZW2 842 aa7.59□□□□□ -1.19
PRPF39-209ENST00000556353 ZNF585AQ6P3V2 769 aa7.59□□□□□ -1.19
PRPF39-209ENST00000556353 OTOP2Q7RTS6 562 aa7.59□□□□□ -1.19
PRPF39-209ENST00000556353 DLG3Q92796 817 aa7.59□□□□□ -1.19
PRPF39-209ENST00000556353 NEIL1Q96FI4 390 aaPredicted RBP7.59□□□□□ -1.19
PRPF39-209ENST00000556353 MRFAP1L1Q96HT8 127 aa7.59□□□□□ -1.19
PRPF39-209ENST00000556353 ASB1Q9Y576 335 aa7.59□□□□□ -1.19
PRPF39-209ENST00000556353 B4E1Z4 1266 aa7.58□□□□□ -1.2
PRPF39-209ENST00000556353 TNFRSF1AP19438 455 aa7.58□□□□□ -1.2
PRPF39-209ENST00000556353 IRF9Q00978 393 aa7.58□□□□□ -1.2
PRPF39-209ENST00000556353 TMEM132BQ14DG7 1078 aa7.58□□□□□ -1.2
PRPF39-209ENST00000556353 TCTN3Q6NUS6 607 aa7.58□□□□□ -1.2
PRPF39-209ENST00000556353 LRSAM1Q6UWE0 723 aa7.58□□□□□ -1.2
PRPF39-209ENST00000556353 DDX53Q86TM3 631 aaKnown RBP7.58□□□□□ -1.2
PRPF39-209ENST00000556353 Q8TCH9 128 aa7.58□□□□□ -1.2
PRPF39-209ENST00000556353 BOCQ9BWV1 1114 aa7.58□□□□□ -1.2
PRPF39-209ENST00000556353 OR10A5Q9H207 317 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms