RNA–Protein interactions for RNA: ENST00000555634.5

SHMT2-220, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 964 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-220ENST00000555634 EYA4O95677 639 aa12.48□□□□□ -0.41
SHMT2-220ENST00000555634 XRCC6P12956 609 aaKnown RBP eCLIP12.48□□□□□ -0.41
SHMT2-220ENST00000555634 LBX1P52954 281 aa12.48□□□□□ -0.41
SHMT2-220ENST00000555634 GRB10Q13322 594 aa12.48□□□□□ -0.41
SHMT2-220ENST00000555634 POSTNQ15063 836 aa12.48□□□□□ -0.41
SHMT2-220ENST00000555634 HSDL1Q3SXM5 330 aa12.48□□□□□ -0.41
SHMT2-220ENST00000555634 XKR3Q5GH77 459 aa12.48□□□□□ -0.41
SHMT2-220ENST00000555634 FBXO46Q6PJ61 603 aaPredicted RBP12.48□□□□□ -0.41
SHMT2-220ENST00000555634 ABHD15Q6UXT9 468 aa12.48□□□□□ -0.41
SHMT2-220ENST00000555634 USP49Q70CQ1 688 aa12.48□□□□□ -0.41
SHMT2-220ENST00000555634 PLPPR4Q7Z2D5 763 aa12.48□□□□□ -0.41
SHMT2-220ENST00000555634 CCDC60Q8IWA6 550 aaPredicted RBP12.48□□□□□ -0.41
SHMT2-220ENST00000555634 ELOA2Q8IYF1 753 aaPredicted RBP12.48□□□□□ -0.41
SHMT2-220ENST00000555634 SMARCE1Q969G3 411 aa12.48□□□□□ -0.41
SHMT2-220ENST00000555634 HSD17B14Q9BPX1 270 aa12.48□□□□□ -0.41
SHMT2-220ENST00000555634 JPH2Q9BR39 696 aaPredicted RBP12.48□□□□□ -0.41
SHMT2-220ENST00000555634 MMTAG2Q9BU76 263 aaKnown RBP12.48□□□□□ -0.41
SHMT2-220ENST00000555634 TIPINQ9BVW5 301 aa12.48□□□□□ -0.41
SHMT2-220ENST00000555634 BHMT2Q9H2M3 363 aa12.48□□□□□ -0.41
SHMT2-220ENST00000555634 ANKEF1Q9NU02 776 aa12.48□□□□□ -0.41
SHMT2-220ENST00000555634 RGL1Q9NZL6 768 aa12.48□□□□□ -0.41
SHMT2-220ENST00000555634 DDX20Q9UHI6 824 aaKnown RBP12.48□□□□□ -0.41
SHMT2-220ENST00000555634 SERTAD1Q9UHV2 236 aa12.48□□□□□ -0.41
SHMT2-220ENST00000555634 DBR1Q9UK59 544 aaKnown RBP12.48□□□□□ -0.41
SHMT2-220ENST00000555634 COL1A2P08123 1366 aa12.47□□□□□ -0.41
SHMT2-220ENST00000555634 KBTBD13C9JR72 458 aa12.47□□□□□ -0.41
SHMT2-220ENST00000555634 ACTN4O43707 911 aaKnown RBP12.47□□□□□ -0.41
SHMT2-220ENST00000555634 SLITRK3O94933 977 aa12.47□□□□□ -0.41
SHMT2-220ENST00000555634 ATG7O95352 703 aa12.47□□□□□ -0.41
SHMT2-220ENST00000555634 MYCNP04198 464 aaPredicted RBP12.47□□□□□ -0.41
SHMT2-220ENST00000555634 LGALS2P05162 132 aa12.47□□□□□ -0.41
SHMT2-220ENST00000555634 PLA2G4BP0C869 781 aa12.47□□□□□ -0.41
SHMT2-220ENST00000555634 AFMP43652 599 aa12.47□□□□□ -0.41
SHMT2-220ENST00000555634 POLGP54098 1239 aaPredicted RBP12.47□□□□□ -0.41
SHMT2-220ENST00000555634 ASIC1P78348 528 aa12.47□□□□□ -0.41
SHMT2-220ENST00000555634 SNW1Q13573 536 aaKnown RBP12.47□□□□□ -0.41
SHMT2-220ENST00000555634 DHX8Q14562 1220 aaKnown RBP12.47□□□□□ -0.41
SHMT2-220ENST00000555634 LONRF3Q496Y0 759 aa12.47□□□□□ -0.41
SHMT2-220ENST00000555634 XKR9Q5GH70 373 aa12.47□□□□□ -0.41
SHMT2-220ENST00000555634 MAP3K21Q5TCX8 1036 aa12.47□□□□□ -0.41
SHMT2-220ENST00000555634 SASS6Q6UVJ0 657 aa12.47□□□□□ -0.41
SHMT2-220ENST00000555634 GPBP1Q86WP2 473 aa12.47□□□□□ -0.41
SHMT2-220ENST00000555634 ENGASEQ8NFI3 743 aa12.47□□□□□ -0.41
SHMT2-220ENST00000555634 SLC7A3Q8WY07 619 aa12.47□□□□□ -0.41
SHMT2-220ENST00000555634 BBXQ8WY36 941 aaPredicted RBP12.47□□□□□ -0.41
SHMT2-220ENST00000555634 COPS5Q92905 334 aa12.47□□□□□ -0.41
SHMT2-220ENST00000555634 GNEQ9Y223 722 aaKnown RBP12.47□□□□□ -0.41
SHMT2-220ENST00000555634 IGKV6D-21A0A0A0MT36 114 aa12.46□□□□□ -0.41
SHMT2-220ENST00000555634 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.46□□□□□ -0.41
SHMT2-220ENST00000555634 GSTTP1A0A1W2PQM5 241 aa12.46□□□□□ -0.41
SHMT2-220ENST00000555634 A6NJR5 290 aa12.46□□□□□ -0.41
SHMT2-220ENST00000555634 GTPBP6O43824 516 aaPredicted RBP12.46□□□□□ -0.41
SHMT2-220ENST00000555634 GAS2O43903 313 aaKnown RBP12.46□□□□□ -0.41
SHMT2-220ENST00000555634 LGR5O75473 907 aa12.46□□□□□ -0.41
SHMT2-220ENST00000555634 IGHA2P01877 340 aa12.46□□□□□ -0.41
SHMT2-220ENST00000555634 MYL3P08590 195 aa12.46□□□□□ -0.41
SHMT2-220ENST00000555634 ZNF286BP0CG31 522 aa12.46□□□□□ -0.41
SHMT2-220ENST00000555634 SPATA31C1P0DKV0 1188 aa12.46□□□□□ -0.41
SHMT2-220ENST00000555634 CCND3P30281 292 aaPredicted RBP12.46□□□□□ -0.41
SHMT2-220ENST00000555634 RFC5P40937 340 aa12.46□□□□□ -0.41
SHMT2-220ENST00000555634 GJA9P57773 515 aa12.46□□□□□ -0.41
SHMT2-220ENST00000555634 E2F4Q16254 413 aa12.46□□□□□ -0.41
SHMT2-220ENST00000555634 CAMK4Q16566 473 aa12.46□□□□□ -0.41
SHMT2-220ENST00000555634 GNASQ5JWF2 1037 aa12.46□□□□□ -0.41
SHMT2-220ENST00000555634 GJC2Q5T442 439 aaPredicted RBP12.46□□□□□ -0.41
SHMT2-220ENST00000555634 CCDC65Q8IXS2 484 aa12.46□□□□□ -0.41
SHMT2-220ENST00000555634 RETREG2Q8NC44 543 aa12.46□□□□□ -0.41
SHMT2-220ENST00000555634 ARRDC4Q8NCT1 418 aa12.46□□□□□ -0.41
SHMT2-220ENST00000555634 MCPH1Q8NEM0 835 aa12.46□□□□□ -0.41
SHMT2-220ENST00000555634 ATP8B4Q8TF62 1192 aa12.46□□□□□ -0.41
SHMT2-220ENST00000555634 CEP170P1Q96L14 293 aa12.46□□□□□ -0.41
SHMT2-220ENST00000555634 DRC1Q96MC2 740 aa12.46□□□□□ -0.41
SHMT2-220ENST00000555634 PNMA5Q96PV4 448 aa12.46□□□□□ -0.41
SHMT2-220ENST00000555634 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.46□□□□□ -0.414e-7■■□□□ 12.9
SHMT2-220ENST00000555634 UPF3AQ9H1J1 476 aaKnown RBP12.46□□□□□ -0.41
SHMT2-220ENST00000555634 EXOC1Q9NV70 894 aa12.46□□□□□ -0.41
SHMT2-220ENST00000555634 DACH1Q9UI36 760 aa12.46□□□□□ -0.41
SHMT2-220ENST00000555634 MAFBQ9Y5Q3 323 aaPredicted RBP12.46□□□□□ -0.41
SHMT2-220ENST00000555634 A0A087X0B3 334 aa12.45□□□□□ -0.42
SHMT2-220ENST00000555634 E9PMD0 336 aa12.45□□□□□ -0.42
SHMT2-220ENST00000555634 H3BRB1 525 aa12.45□□□□□ -0.42
SHMT2-220ENST00000555634 HBP1O60381 514 aa12.45□□□□□ -0.42
SHMT2-220ENST00000555634 DGAT1O75907 488 aa12.45□□□□□ -0.42
SHMT2-220ENST00000555634 CABYRO75952 493 aa12.45□□□□□ -0.42
SHMT2-220ENST00000555634 CCDC192P0DO97 292 aa12.45□□□□□ -0.42
SHMT2-220ENST00000555634 GNAT1P11488 350 aa12.45□□□□□ -0.42
SHMT2-220ENST00000555634 MARK3P27448 753 aa12.45□□□□□ -0.42
SHMT2-220ENST00000555634 CHMP4BP1P59074 171 aa12.45□□□□□ -0.42
SHMT2-220ENST00000555634 TBC1D8BQ0IIM8 1120 aa12.45□□□□□ -0.42
SHMT2-220ENST00000555634 STIM1Q13586 685 aa12.45□□□□□ -0.42
SHMT2-220ENST00000555634 MCM6Q14566 821 aa12.45□□□□□ -0.42
SHMT2-220ENST00000555634 UGCGQ16739 394 aa12.45□□□□□ -0.42
SHMT2-220ENST00000555634 STXBP4Q6ZWJ1 553 aa12.45□□□□□ -0.42
SHMT2-220ENST00000555634 TRMT1LQ7Z2T5 733 aaKnown RBP12.45□□□□□ -0.42
SHMT2-220ENST00000555634 SYT2Q8N9I0 419 aaPredicted RBP12.45□□□□□ -0.42
SHMT2-220ENST00000555634 PIGOQ8TEQ8 1089 aa12.45□□□□□ -0.42
SHMT2-220ENST00000555634 SH3TC2Q8TF17 1288 aa12.45□□□□□ -0.42
SHMT2-220ENST00000555634 LENG1Q96BZ8 264 aaPredicted RBP12.45□□□□□ -0.42
SHMT2-220ENST00000555634 PAGE5Q96GU1 130 aa12.45□□□□□ -0.42
SHMT2-220ENST00000555634 GSDMAQ96QA5 445 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms