RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 TRIM60Q495X7 471 aa12.23□□□□□ -0.45
SHMT2-218ENST00000555213 ARL6IP4Q66PJ3 421 aaKnown RBP12.23□□□□□ -0.45
SHMT2-218ENST00000555213 SWSAP1Q6NVH7 229 aa12.23□□□□□ -0.45
SHMT2-218ENST00000555213 CAVIN1Q6NZI2 390 aaKnown RBP12.23□□□□□ -0.45
SHMT2-218ENST00000555213 B3GNT9Q6UX72 402 aa12.23□□□□□ -0.45
SHMT2-218ENST00000555213 USP49Q70CQ1 688 aa12.23□□□□□ -0.45
SHMT2-218ENST00000555213 SESTD1Q86VW0 696 aa12.23□□□□□ -0.45
SHMT2-218ENST00000555213 CCDC60Q8IWA6 550 aaPredicted RBP12.23□□□□□ -0.45
SHMT2-218ENST00000555213 DPF3Q92784 378 aa12.23□□□□□ -0.45
SHMT2-218ENST00000555213 GZF1Q9H116 711 aaPredicted RBP12.23□□□□□ -0.45
SHMT2-218ENST00000555213 GABBR1Q9UBS5 961 aa12.23□□□□□ -0.45
SHMT2-218ENST00000555213 PRKAG2Q9UGJ0 569 aa12.23□□□□□ -0.45
SHMT2-218ENST00000555213 HPSEQ9Y251 543 aa12.23□□□□□ -0.45
SHMT2-218ENST00000555213 TELO2Q9Y4R8 837 aa12.23□□□□□ -0.45
SHMT2-218ENST00000555213 A0A1B0GVL5 298 aa12.22□□□□□ -0.45
SHMT2-218ENST00000555213 POTEB3A0JP26 581 aa12.22□□□□□ -0.45
SHMT2-218ENST00000555213 SMIM10L2AP0DMW4 78 aa12.22□□□□□ -0.45
SHMT2-218ENST00000555213 SMIM10L2BP0DMW5 78 aa12.22□□□□□ -0.45
SHMT2-218ENST00000555213 TECP42680 631 aa12.22□□□□□ -0.45
SHMT2-218ENST00000555213 PSMC5P62195 406 aa12.22□□□□□ -0.45
SHMT2-218ENST00000555213 PRKCEQ02156 737 aa12.22□□□□□ -0.45
SHMT2-218ENST00000555213 PPFIA1Q13136 1202 aa12.22□□□□□ -0.45
SHMT2-218ENST00000555213 EPHA7Q15375 998 aa12.22□□□□□ -0.45
SHMT2-218ENST00000555213 RESP18Q5W5W9 173 aa12.22□□□□□ -0.45
SHMT2-218ENST00000555213 POTEBQ6S5H4 581 aa12.22□□□□□ -0.45
SHMT2-218ENST00000555213 ANKRD33Q7Z3H0 272 aa12.22□□□□□ -0.45
SHMT2-218ENST00000555213 FMR1NBQ8N0W7 255 aaPredicted RBP12.22□□□□□ -0.45
SHMT2-218ENST00000555213 KRI1Q8N9T8 703 aaKnown RBP12.22□□□□□ -0.45
SHMT2-218ENST00000555213 ZNF579Q8NAF0 562 aaKnown RBP12.22□□□□□ -0.45
SHMT2-218ENST00000555213 SLC43A3Q8NBI5 491 aa12.22□□□□□ -0.45
SHMT2-218ENST00000555213 ATP8B4Q8TF62 1192 aa12.22□□□□□ -0.45
SHMT2-218ENST00000555213 TOX2Q96NM4 488 aa12.22□□□□□ -0.45
SHMT2-218ENST00000555213 NR2E3Q9Y5X4 410 aa12.22□□□□□ -0.45
SHMT2-218ENST00000555213 DOCK5Q9H7D0 1870 aa12.22□□□□□ -0.45
SHMT2-218ENST00000555213 SCN10AQ9Y5Y9 1956 aa12.21□□□□□ -0.45
SHMT2-218ENST00000555213 NRCAMQ92823 1304 aa12.21□□□□□ -0.45
SHMT2-218ENST00000555213 C17orf102A2RUQ5 167 aa12.21□□□□□ -0.45
SHMT2-218ENST00000555213 POTEMA6NI47 508 aa12.21□□□□□ -0.45
SHMT2-218ENST00000555213 OATP04181 439 aa12.21□□□□□ -0.45
SHMT2-218ENST00000555213 P4HBP07237 508 aaKnown RBP12.21□□□□□ -0.45
SHMT2-218ENST00000555213 CLTBP09497 229 aa12.21□□□□□ -0.45
SHMT2-218ENST00000555213 QARSP47897 775 aaKnown RBP12.21□□□□□ -0.45
SHMT2-218ENST00000555213 NDUFA8P51970 172 aa12.21□□□□□ -0.45
SHMT2-218ENST00000555213 TLE2Q04725 743 aa12.21□□□□□ -0.45
SHMT2-218ENST00000555213 SPIRE1Q08AE8 756 aa12.21□□□□□ -0.45
SHMT2-218ENST00000555213 ZSCAN23Q3MJ62 389 aa12.21□□□□□ -0.45
SHMT2-218ENST00000555213 SPECC1Q5M775 1068 aa12.21□□□□□ -0.45
SHMT2-218ENST00000555213 GAS2L3Q86XJ1 694 aa12.21□□□□□ -0.45
SHMT2-218ENST00000555213 FAM126BQ8IXS8 530 aa12.21□□□□□ -0.45
SHMT2-218ENST00000555213 C7orf61Q8IZ16 206 aa12.21□□□□□ -0.45
SHMT2-218ENST00000555213 CCDC155Q8N6L0 562 aa12.21□□□□□ -0.45
SHMT2-218ENST00000555213 FSIP1Q8NA03 581 aa12.21□□□□□ -0.45
SHMT2-218ENST00000555213 BANK1Q8NDB2 785 aa12.21□□□□□ -0.45
SHMT2-218ENST00000555213 BBXQ8WY36 941 aaPredicted RBP12.21□□□□□ -0.45
SHMT2-218ENST00000555213 CCDC43Q96MW1 224 aaKnown RBP12.21□□□□□ -0.45
SHMT2-218ENST00000555213 PCYT2Q99447 389 aa12.21□□□□□ -0.45
SHMT2-218ENST00000555213 LXNQ9BS40 222 aa12.21□□□□□ -0.45
SHMT2-218ENST00000555213 CSRNP2Q9H175 543 aa12.21□□□□□ -0.45
SHMT2-218ENST00000555213 PRDM5Q9NQX1 630 aaPredicted RBP12.21□□□□□ -0.45
SHMT2-218ENST00000555213 NRBP2Q9NSY0 501 aa12.21□□□□□ -0.45
SHMT2-218ENST00000555213 DACT1Q9NYF0 836 aa12.21□□□□□ -0.45
SHMT2-218ENST00000555213 LRWD1Q9UFC0 647 aa12.21□□□□□ -0.45
SHMT2-218ENST00000555213 GTF2IRD1Q9UHL9 959 aa12.21□□□□□ -0.45
SHMT2-218ENST00000555213 MAFBQ9Y5Q3 323 aaPredicted RBP12.21□□□□□ -0.45
SHMT2-218ENST00000555213 COL1A2P08123 1366 aa12.2□□□□□ -0.46
SHMT2-218ENST00000555213 GRIN2DO15399 1336 aa12.2□□□□□ -0.46
SHMT2-218ENST00000555213 VWA3AA6NCI4 1184 aa12.2□□□□□ -0.46
SHMT2-218ENST00000555213 RRN3P2A6NIE6 340 aa12.2□□□□□ -0.46
SHMT2-218ENST00000555213 EML1O00423 815 aa12.2□□□□□ -0.46
SHMT2-218ENST00000555213 HBP1O60381 514 aa12.2□□□□□ -0.46
SHMT2-218ENST00000555213 CDK7P50613 346 aa12.2□□□□□ -0.46
SHMT2-218ENST00000555213 CYP4A11Q02928 519 aa12.2□□□□□ -0.46
SHMT2-218ENST00000555213 PDIA5Q14554 519 aa12.2□□□□□ -0.46
SHMT2-218ENST00000555213 PLCB4Q15147 1175 aa12.2□□□□□ -0.46
SHMT2-218ENST00000555213 GRIK4Q16099 956 aa12.2□□□□□ -0.46
SHMT2-218ENST00000555213 PTGISQ16647 500 aa12.2□□□□□ -0.46
SHMT2-218ENST00000555213 XKR3Q5GH77 459 aa12.2□□□□□ -0.46
SHMT2-218ENST00000555213 KRT79Q5XKE5 535 aa12.2□□□□□ -0.46
SHMT2-218ENST00000555213 AK8Q96MA6 479 aa12.2□□□□□ -0.46
SHMT2-218ENST00000555213 EIF2AK1Q9BQI3 630 aaKnown RBP12.2□□□□□ -0.46
SHMT2-218ENST00000555213 RNPEPQ9H4A4 650 aa12.2□□□□□ -0.46
SHMT2-218ENST00000555213 ZSWIM4Q9H7M6 989 aa12.2□□□□□ -0.46
SHMT2-218ENST00000555213 HDAC6Q9UBN7 1215 aa12.2□□□□□ -0.46
SHMT2-218ENST00000555213 SEPT9Q9UHD8 586 aaPredicted RBP12.2□□□□□ -0.46
SHMT2-218ENST00000555213 CENPFP49454 3210 aa12.2□□□□□ -0.46
SHMT2-218ENST00000555213 KDM3AQ9Y4C1 1321 aa12.19□□□□□ -0.46
SHMT2-218ENST00000555213 GOLGA6L4A6NEF3 574 aa12.19□□□□□ -0.46
SHMT2-218ENST00000555213 B4GALT4O60513 344 aa12.19□□□□□ -0.46
SHMT2-218ENST00000555213 RPLP2P05387 115 aaKnown RBP12.19□□□□□ -0.46
SHMT2-218ENST00000555213 PFKFB1P16118 471 aa12.19□□□□□ -0.46
SHMT2-218ENST00000555213 LONP1P36776 959 aaKnown RBP12.19□□□□□ -0.46
SHMT2-218ENST00000555213 TXLNAP40222 546 aa12.19□□□□□ -0.46
SHMT2-218ENST00000555213 CCT6AP40227 531 aaKnown RBP12.19□□□□□ -0.46
SHMT2-218ENST00000555213 ZNF445P59923 1031 aa12.19□□□□□ -0.46
SHMT2-218ENST00000555213 FAM160A1Q05DH4 1040 aa12.19□□□□□ -0.46
SHMT2-218ENST00000555213 UGCGQ16739 394 aa12.19□□□□□ -0.46
SHMT2-218ENST00000555213 ZNF484Q5JVG2 852 aa12.19□□□□□ -0.46
SHMT2-218ENST00000555213 RBM43Q6ZSC3 357 aaKnown RBP12.19□□□□□ -0.46
SHMT2-218ENST00000555213 OTUD6AQ7L8S5 288 aa12.19□□□□□ -0.46
SHMT2-218ENST00000555213 TPH2Q8IWU9 490 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms