RNA–Protein interactions for RNA: ENST00000552620.1

CHMP4A-210, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 2

Gene CHMP4A, Length 716 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-210ENST00000552620 THRAP3Q9Y2W1 955 aaKnown RBP6.74□□□□□ -1.33
CHMP4A-210ENST00000552620 V9GYY5 206 aaPredicted RBP6.74□□□□□ -1.33
CHMP4A-210ENST00000552620 ZNF804BA4D1E1 1349 aa6.74□□□□□ -1.33
CHMP4A-210ENST00000552620 TNKSO95271 1327 aa6.74□□□□□ -1.33
CHMP4A-210ENST00000552620 ITGB4P16144 1822 aa6.73□□□□□ -1.33
CHMP4A-210ENST00000552620 CCDC66A2RUB6 948 aa6.73□□□□□ -1.33
CHMP4A-210ENST00000552620 H3BRJ5 948 aa6.73□□□□□ -1.33
CHMP4A-210ENST00000552620 ORC4O43929 436 aa6.73□□□□□ -1.33
CHMP4A-210ENST00000552620 NTSR2O95665 410 aa6.73□□□□□ -1.33
CHMP4A-210ENST00000552620 GARTP22102 1010 aa6.73□□□□□ -1.33
CHMP4A-210ENST00000552620 CALML3P27482 149 aa6.73□□□□□ -1.33
CHMP4A-210ENST00000552620 PBX1P40424 430 aa6.73□□□□□ -1.33
CHMP4A-210ENST00000552620 ARL4DP49703 201 aa6.73□□□□□ -1.33
CHMP4A-210ENST00000552620 CHRNDQ07001 517 aa6.73□□□□□ -1.33
CHMP4A-210ENST00000552620 RBL2Q08999 1139 aa6.73□□□□□ -1.33
CHMP4A-210ENST00000552620 AP3B2Q13367 1082 aa6.73□□□□□ -1.33
CHMP4A-210ENST00000552620 CUL4BQ13620 913 aa6.73□□□□□ -1.33
CHMP4A-210ENST00000552620 BRD3Q15059 726 aa6.73□□□□□ -1.33
CHMP4A-210ENST00000552620 ZNF423Q2M1K9 1284 aa6.73□□□□□ -1.33
CHMP4A-210ENST00000552620 CCDC178Q5BJE1 867 aa6.73□□□□□ -1.33
CHMP4A-210ENST00000552620 CAVIN4Q5BKX8 364 aa6.73□□□□□ -1.33
CHMP4A-210ENST00000552620 SPECC1Q5M775 1068 aa6.73□□□□□ -1.33
CHMP4A-210ENST00000552620 CDKAL1Q5VV42 579 aa6.73□□□□□ -1.33
CHMP4A-210ENST00000552620 ARL6IP4Q66PJ3 421 aaKnown RBP6.73□□□□□ -1.33
CHMP4A-210ENST00000552620 LLGL2Q6P1M3 1020 aa6.73□□□□□ -1.33
CHMP4A-210ENST00000552620 CLEC4GQ6UXB4 293 aa6.73□□□□□ -1.33
CHMP4A-210ENST00000552620 FAM196AQ6ZSG2 479 aa6.73□□□□□ -1.33
CHMP4A-210ENST00000552620 RSRC2Q7L4I2 434 aaKnown RBP6.73□□□□□ -1.33
CHMP4A-210ENST00000552620 TMTC1Q8IUR5 882 aa6.73□□□□□ -1.33
CHMP4A-210ENST00000552620 CNGA4Q8IV77 575 aa6.73□□□□□ -1.33
CHMP4A-210ENST00000552620 ANKRD18AQ8IVF6 992 aa6.73□□□□□ -1.33
CHMP4A-210ENST00000552620 CEP112Q8N8E3 955 aa6.73□□□□□ -1.33
CHMP4A-210ENST00000552620 IGSF22Q8N9C0 903 aa6.73□□□□□ -1.33
CHMP4A-210ENST00000552620 GOLGA1Q92805 767 aa6.73□□□□□ -1.33
CHMP4A-210ENST00000552620 NKD1Q969G9 470 aa6.73□□□□□ -1.33
CHMP4A-210ENST00000552620 DHX58Q96C10 678 aa6.73□□□□□ -1.33
CHMP4A-210ENST00000552620 JPH1Q9HDC5 661 aaPredicted RBP6.73□□□□□ -1.33
CHMP4A-210ENST00000552620 SH3GLB2Q9NR46 395 aa6.73□□□□□ -1.33
CHMP4A-210ENST00000552620 SAMSN1Q9NSI8 373 aaKnown RBP6.73□□□□□ -1.33
CHMP4A-210ENST00000552620 BSDC1Q9NW68 430 aaPredicted RBP6.73□□□□□ -1.33
CHMP4A-210ENST00000552620 ZNF446Q9NWS9 450 aa6.73□□□□□ -1.33
CHMP4A-210ENST00000552620 MYO1AQ9UBC5 1043 aa6.73□□□□□ -1.33
CHMP4A-210ENST00000552620 ADD3Q9UEY8 706 aaKnown RBP6.73□□□□□ -1.33
CHMP4A-210ENST00000552620 LIMA1Q9UHB6 759 aaKnown RBP6.73□□□□□ -1.33
CHMP4A-210ENST00000552620 ZNF652Q9Y2D9 606 aa6.73□□□□□ -1.33
CHMP4A-210ENST00000552620 MRFAP1Q9Y605 127 aa6.73□□□□□ -1.33
CHMP4A-210ENST00000552620 FHOD1Q9Y613 1164 aa6.73□□□□□ -1.33
CHMP4A-210ENST00000552620 PDS5AQ29RF7 1337 aaKnown RBP6.73□□□□□ -1.33
CHMP4A-210ENST00000552620 XIRP1Q702N8 1843 aaKnown RBP6.72□□□□□ -1.33
CHMP4A-210ENST00000552620 UBE2Q2LH0YL09 131 aa6.72□□□□□ -1.33
CHMP4A-210ENST00000552620 H7C1D1 291 aa6.72□□□□□ -1.33
CHMP4A-210ENST00000552620 NPHP1O15259 732 aa6.72□□□□□ -1.33
CHMP4A-210ENST00000552620 KIF5CO60282 957 aa6.72□□□□□ -1.33
CHMP4A-210ENST00000552620 MYL1P05976 194 aa6.72□□□□□ -1.33
CHMP4A-210ENST00000552620 PNMA6AP0CW24 399 aaPredicted RBP6.72□□□□□ -1.33
CHMP4A-210ENST00000552620 ARNTP27540 789 aa6.72□□□□□ -1.33
CHMP4A-210ENST00000552620 KIF5BP33176 963 aa6.72□□□□□ -1.33
CHMP4A-210ENST00000552620 CRKLP46109 303 aaKnown RBP6.72□□□□□ -1.33
CHMP4A-210ENST00000552620 SOX9P48436 509 aa6.72□□□□□ -1.33
CHMP4A-210ENST00000552620 ADKP55263 362 aaKnown RBP6.72□□□□□ -1.33
CHMP4A-210ENST00000552620 ATP2C1P98194 919 aaPredicted RBP6.72□□□□□ -1.33
CHMP4A-210ENST00000552620 SRSF11Q05519 484 aaKnown RBP6.72□□□□□ -1.33
CHMP4A-210ENST00000552620 GRIN1Q05586 938 aa6.72□□□□□ -1.33
CHMP4A-210ENST00000552620 TROAPQ12815 778 aa6.72□□□□□ -1.33
CHMP4A-210ENST00000552620 SBK1Q52WX2 424 aa6.72□□□□□ -1.33
CHMP4A-210ENST00000552620 SLC10A5Q5PT55 438 aa6.72□□□□□ -1.33
CHMP4A-210ENST00000552620 TTC38Q5R3I4 469 aa6.72□□□□□ -1.33
CHMP4A-210ENST00000552620 SCARA3Q6AZY7 606 aa6.72□□□□□ -1.33
CHMP4A-210ENST00000552620 GALNT17Q6IS24 598 aa6.72□□□□□ -1.33
CHMP4A-210ENST00000552620 TMTC3Q6ZXV5 915 aa6.72□□□□□ -1.33
CHMP4A-210ENST00000552620 RASGRP2Q7LDG7 609 aa6.72□□□□□ -1.33
CHMP4A-210ENST00000552620 APTXQ7Z2E3 356 aaKnown RBP6.72□□□□□ -1.33
CHMP4A-210ENST00000552620 MSL3Q8N5Y2 521 aaKnown RBP6.72□□□□□ -1.33
CHMP4A-210ENST00000552620 ENAHQ8N8S7 591 aaPredicted RBP6.72□□□□□ -1.33
CHMP4A-210ENST00000552620 CTCFLQ8NI51 663 aaPredicted RBP6.72□□□□□ -1.33
CHMP4A-210ENST00000552620 NOC3LQ8WTT2 800 aaKnown RBP6.72□□□□□ -1.33
CHMP4A-210ENST00000552620 NUDT8Q8WV74 236 aa6.72□□□□□ -1.33
CHMP4A-210ENST00000552620 CPLX3Q8WVH0 158 aa6.72□□□□□ -1.33
CHMP4A-210ENST00000552620 SMARCC1Q92922 1105 aaPredicted RBP6.72□□□□□ -1.33
CHMP4A-210ENST00000552620 RIOK1Q9BRS2 568 aaKnown RBP6.72□□□□□ -1.33
CHMP4A-210ENST00000552620 COL25A1Q9BXS0 654 aaPredicted RBP6.72□□□□□ -1.33
CHMP4A-210ENST00000552620 ATP8A2Q9NTI2 1148 aa6.72□□□□□ -1.33
CHMP4A-210ENST00000552620 GINM1Q9NU53 330 aa6.72□□□□□ -1.33
CHMP4A-210ENST00000552620 UBP1Q9NZI7 540 aa6.72□□□□□ -1.33
CHMP4A-210ENST00000552620 STK17AQ9UEE5 414 aa6.72□□□□□ -1.33
CHMP4A-210ENST00000552620 RWDD2AQ9UIY3 292 aa6.72□□□□□ -1.33
CHMP4A-210ENST00000552620 NIP7Q9Y221 180 aaKnown RBP eCLIP6.72□□□□□ -1.33
CHMP4A-210ENST00000552620 PPME1Q9Y570 386 aa6.72□□□□□ -1.33
CHMP4A-210ENST00000552620 MYO5AQ9Y4I1 1855 aaKnown RBP6.72□□□□□ -1.33
CHMP4A-210ENST00000552620 SYNRGQ9UMZ2 1314 aa6.72□□□□□ -1.33
CHMP4A-210ENST00000552620 BCORQ6W2J9 1755 aa6.72□□□□□ -1.33
CHMP4A-210ENST00000552620 CHD4Q14839 1912 aa6.72□□□□□ -1.33
CHMP4A-210ENST00000552620 ABCA3Q99758 1704 aa6.71□□□□□ -1.34
CHMP4A-210ENST00000552620 BPNT1O95861 308 aa6.71□□□□□ -1.34
CHMP4A-210ENST00000552620 EPXP11678 715 aa6.71□□□□□ -1.34
CHMP4A-210ENST00000552620 EPHA1P21709 976 aa6.71□□□□□ -1.34
CHMP4A-210ENST00000552620 LONP1P36776 959 aaKnown RBP6.71□□□□□ -1.34
CHMP4A-210ENST00000552620 AFMP43652 599 aa6.71□□□□□ -1.34
CHMP4A-210ENST00000552620 GNAQP50148 359 aa6.71□□□□□ -1.34
CHMP4A-210ENST00000552620 NLRP5P59047 1200 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms