RNA–Protein interactions for RNA: ENST00000546164.5

YBX3-217, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 805 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-217ENST00000546164 TRPC6Q9Y210 931 aa13.42□□□□□ -0.26
YBX3-217ENST00000546164 IGSF9BQ9UPX0 1349 aa13.41□□□□□ -0.26
YBX3-217ENST00000546164 BTBD18B2RXH4 712 aa13.41□□□□□ -0.26
YBX3-217ENST00000546164 TBX3O15119 743 aa13.41□□□□□ -0.26
YBX3-217ENST00000546164 SLC37A4O43826 429 aa13.41□□□□□ -0.26
YBX3-217ENST00000546164 HBP1O60381 514 aa13.41□□□□□ -0.26
YBX3-217ENST00000546164 PDXDC2PQ6P474 469 aa13.41□□□□□ -0.26
YBX3-217ENST00000546164 TET1Q8NFU7 2136 aa13.41□□□□□ -0.26
YBX3-217ENST00000546164 FBXO18Q8NFZ0 1043 aa13.41□□□□□ -0.26
YBX3-217ENST00000546164 C8orf76Q96K31 380 aa13.41□□□□□ -0.26
YBX3-217ENST00000546164 FAM20AQ96MK3 541 aa13.41□□□□□ -0.26
YBX3-217ENST00000546164 FTOQ9C0B1 505 aaKnown RBP eCLIP13.41□□□□□ -0.26
YBX3-217ENST00000546164 UNC45AQ9H3U1 944 aa13.41□□□□□ -0.26
YBX3-217ENST00000546164 DISC1Q9NRI5 854 aa13.41□□□□□ -0.26
YBX3-217ENST00000546164 COL1A2P08123 1366 aa13.41□□□□□ -0.26
YBX3-217ENST00000546164 CHD9Q3L8U1 2897 aa13.4□□□□□ -0.26
YBX3-217ENST00000546164 FAM205CA6NFA0 338 aa13.4□□□□□ -0.26
YBX3-217ENST00000546164 CCNT1O60563 726 aaKnown RBP13.4□□□□□ -0.26
YBX3-217ENST00000546164 CD2BP2O95400 341 aaKnown RBP13.4□□□□□ -0.26
YBX3-217ENST00000546164 ATP4AP20648 1035 aa13.4□□□□□ -0.26
YBX3-217ENST00000546164 SAFBQ15424 915 aaKnown RBP eCLIP13.4□□□□□ -0.26
YBX3-217ENST00000546164 ZNF484Q5JVG2 852 aa13.4□□□□□ -0.26
YBX3-217ENST00000546164 CNKSR3Q6P9H4 555 aa13.4□□□□□ -0.26
YBX3-217ENST00000546164 RUFY4Q6ZNE9 571 aa13.4□□□□□ -0.26
YBX3-217ENST00000546164 RSPH3Q86UC2 560 aa13.4□□□□□ -0.26
YBX3-217ENST00000546164 PHOSPHO2Q8TCD6 241 aa13.4□□□□□ -0.26
YBX3-217ENST00000546164 BBXQ8WY36 941 aaPredicted RBP13.4□□□□□ -0.26
YBX3-217ENST00000546164 TMX3Q96JJ7 454 aa13.4□□□□□ -0.26
YBX3-217ENST00000546164 GABBR1Q9UBS5 961 aa13.4□□□□□ -0.26
YBX3-217ENST00000546164 SAMM50Q9Y512 469 aa13.4□□□□□ -0.26
YBX3-217ENST00000546164 PCDHA2Q9Y5H9 948 aa13.4□□□□□ -0.26
YBX3-217ENST00000546164 SLC4A7Q9Y6M7 1214 aa13.4□□□□□ -0.26
YBX3-217ENST00000546164 SCN5AQ14524 2016 aa13.4□□□□□ -0.26
YBX3-217ENST00000546164 KAT6AQ92794 2004 aa13.39□□□□□ -0.27
YBX3-217ENST00000546164 SMIM35A0A1B0GVV1 85 aa13.39□□□□□ -0.27
YBX3-217ENST00000546164 ABHD14A-ACY1A0A1B0GW23 586 aa13.39□□□□□ -0.27
YBX3-217ENST00000546164 ZBTB42B2RXF5 422 aa13.39□□□□□ -0.27
YBX3-217ENST00000546164 EFCAB14O75071 495 aa13.39□□□□□ -0.27
YBX3-217ENST00000546164 DNAJB2P25686 324 aa13.39□□□□□ -0.27
YBX3-217ENST00000546164 IGBP1P78318 339 aa13.39□□□□□ -0.27
YBX3-217ENST00000546164 MGAT3Q09327 533 aa13.39□□□□□ -0.27
YBX3-217ENST00000546164 PPP2R5CQ13362 524 aa13.39□□□□□ -0.27
YBX3-217ENST00000546164 PLEKHG4Q58EX7 1191 aa13.39□□□□□ -0.27
YBX3-217ENST00000546164 DEFB123Q8N688 67 aa13.39□□□□□ -0.27
YBX3-217ENST00000546164 FAM184AQ8NB25 1140 aa13.39□□□□□ -0.27
YBX3-217ENST00000546164 HAS1Q92839 578 aa13.39□□□□□ -0.27
YBX3-217ENST00000546164 GJA10Q969M2 543 aa13.39□□□□□ -0.27
YBX3-217ENST00000546164 FAM167AQ96KS9 214 aa13.39□□□□□ -0.27
YBX3-217ENST00000546164 SLC9A7Q96T83 725 aa13.39□□□□□ -0.27
YBX3-217ENST00000546164 FOXP1Q9H334 677 aaPredicted RBP13.39□□□□□ -0.27
YBX3-217ENST00000546164 VAV3Q9UKW4 847 aa13.39□□□□□ -0.27
YBX3-217ENST00000546164 CEP131Q9UPN4 1083 aa13.39□□□□□ -0.27
YBX3-217ENST00000546164 CDH23Q9H251 3354 aa13.38□□□□□ -0.27
YBX3-217ENST00000546164 ZBBXA8MT70 800 aa13.38□□□□□ -0.27
YBX3-217ENST00000546164 GRXCR1A8MXD5 290 aa13.38□□□□□ -0.27
YBX3-217ENST00000546164 CHMP2AO43633 222 aa13.38□□□□□ -0.27
YBX3-217ENST00000546164 ZNF862O60290 1169 aa13.38□□□□□ -0.27
YBX3-217ENST00000546164 CHRNA1P02708 482 aa13.38□□□□□ -0.27
YBX3-217ENST00000546164 CTSHP09668 335 aa13.38□□□□□ -0.27
YBX3-217ENST00000546164 ATP2A2P16615 1042 aaKnown RBP13.38□□□□□ -0.27
YBX3-217ENST00000546164 FOSBP53539 338 aa13.38□□□□□ -0.27
YBX3-217ENST00000546164 RAB30Q15771 203 aa13.38□□□□□ -0.27
YBX3-217ENST00000546164 ZNF697Q5TEC3 545 aa13.38□□□□□ -0.27
YBX3-217ENST00000546164 MTHFD1LQ6UB35 978 aa13.38□□□□□ -0.27
YBX3-217ENST00000546164 MIER3Q7Z3K6 550 aa13.38□□□□□ -0.27
YBX3-217ENST00000546164 SLFN12Q8IYM2 578 aa13.38□□□□□ -0.27
YBX3-217ENST00000546164 TRAPPC12Q8WVT3 735 aa13.38□□□□□ -0.27
YBX3-217ENST00000546164 DNAJB3Q8WWF6 145 aa13.38□□□□□ -0.27
YBX3-217ENST00000546164 PBX4Q9BYU1 374 aa13.38□□□□□ -0.27
YBX3-217ENST00000546164 PLSCR2Q9NRY7 297 aa13.38□□□□□ -0.27
YBX3-217ENST00000546164 MTMR10Q9NXD2 777 aa13.38□□□□□ -0.27
YBX3-217ENST00000546164 KIF3AQ9Y496 699 aa13.38□□□□□ -0.27
YBX3-217ENST00000546164 OATP04181 439 aa13.37□□□□□ -0.27
YBX3-217ENST00000546164 KLRC1P26715 233 aa13.37□□□□□ -0.27
YBX3-217ENST00000546164 WDR5P61964 334 aaKnown RBP13.37□□□□□ -0.27
YBX3-217ENST00000546164 MRPS6P82932 125 aaKnown RBP13.37□□□□□ -0.27
YBX3-217ENST00000546164 GUCY1B3Q02153 619 aa13.37□□□□□ -0.27
YBX3-217ENST00000546164 SPIRE1Q08AE8 756 aa13.37□□□□□ -0.27
YBX3-217ENST00000546164 ORC2Q13416 577 aaPredicted RBP13.37□□□□□ -0.27
YBX3-217ENST00000546164 IKBKEQ14164 716 aa13.37□□□□□ -0.27
YBX3-217ENST00000546164 UGCGQ16739 394 aa13.37□□□□□ -0.27
YBX3-217ENST00000546164 TCTN1Q2MV58 587 aa13.37□□□□□ -0.27
YBX3-217ENST00000546164 IER5Q5VY09 327 aa13.37□□□□□ -0.27
YBX3-217ENST00000546164 Q7L0L9 218 aa13.37□□□□□ -0.27
YBX3-217ENST00000546164 CKAP2LQ8IYA6 745 aa13.37□□□□□ -0.27
YBX3-217ENST00000546164 NME8Q8N427 588 aa13.37□□□□□ -0.27
YBX3-217ENST00000546164 DBF4BQ8NFT6 615 aa13.37□□□□□ -0.27
YBX3-217ENST00000546164 TTYH1Q9H313 450 aaPredicted RBP13.37□□□□□ -0.27
YBX3-217ENST00000546164 SQORQ9Y6N5 450 aa13.37□□□□□ -0.27
YBX3-217ENST00000546164 CHD7Q9P2D1 2997 aa13.37□□□□□ -0.27
YBX3-217ENST00000546164 KDM3AQ9Y4C1 1321 aa13.37□□□□□ -0.27
YBX3-217ENST00000546164 WNT7AO00755 349 aa13.36□□□□□ -0.27
YBX3-217ENST00000546164 MAGEB2O15479 319 aa13.36□□□□□ -0.27
YBX3-217ENST00000546164 BAG4O95429 457 aaKnown RBP13.36□□□□□ -0.27
YBX3-217ENST00000546164 C22orf31O95567 290 aa13.36□□□□□ -0.27
YBX3-217ENST00000546164 U2AF2P26368 475 aaKnown RBP eCLIP13.36□□□□□ -0.274e-9■■□□□ 13.3
YBX3-217ENST00000546164 PBX2P40425 430 aa13.36□□□□□ -0.27
YBX3-217ENST00000546164 KCNJ6P48051 423 aa13.36□□□□□ -0.27
YBX3-217ENST00000546164 TRAPPC10P48553 1259 aa13.36□□□□□ -0.27
YBX3-217ENST00000546164 PRKCEQ02156 737 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms