RNA–Protein interactions for RNA: ENST00000543658.5

DDB1-223, Transcript of damage specific DNA binding protein 1, human

TSL 4

Gene DDB1, Length 571 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-223	ENST00000543658	LGR5	O75473	907 aa		13.28	□□□□□ -0.28
DDB1-223	ENST00000543658	SLITRK3	O94933	977 aa		13.28	□□□□□ -0.28
DDB1-223	ENST00000543658	ZNF202	O95125	648 aa		13.28	□□□□□ -0.28
DDB1-223	ENST00000543658	OAT	P04181	439 aa		13.28	□□□□□ -0.28
DDB1-223	ENST00000543658	SSB	P05455	408 aa	Known RBP eCLIP	13.28	□□□□□ -0.28
DDB1-223	ENST00000543658	MARK3	P27448	753 aa		13.28	□□□□□ -0.28
DDB1-223	ENST00000543658	CHMP4BP1	P59074	171 aa		13.28	□□□□□ -0.28
DDB1-223	ENST00000543658	GRB10	Q13322	594 aa		13.28	□□□□□ -0.28
DDB1-223	ENST00000543658	UGCG	Q16739	394 aa		13.28	□□□□□ -0.28
DDB1-223	ENST00000543658	TMEM119	Q4V9L6	283 aa		13.28	□□□□□ -0.28
DDB1-223	ENST00000543658	KANK3	Q6NY19	840 aa		13.28	□□□□□ -0.28
DDB1-223	ENST00000543658	PLPPR4	Q7Z2D5	763 aa		13.28	□□□□□ -0.28
DDB1-223	ENST00000543658	TRIM50	Q86XT4	487 aa		13.28	□□□□□ -0.28
DDB1-223	ENST00000543658	ARRDC4	Q8NCT1	418 aa		13.28	□□□□□ -0.28
DDB1-223	ENST00000543658	LARP4B	Q92615	738 aa	Known RBP	13.28	□□□□□ -0.28
DDB1-223	ENST00000543658	PNMA5	Q96PV4	448 aa		13.28	□□□□□ -0.28
DDB1-223	ENST00000543658	HSD17B14	Q9BPX1	270 aa		13.28	□□□□□ -0.28
DDB1-223	ENST00000543658	LRRC27	Q9C0I9	530 aa		13.28	□□□□□ -0.28
DDB1-223	ENST00000543658	NRBP2	Q9NSY0	501 aa		13.28	□□□□□ -0.28
DDB1-223	ENST00000543658	HPSE	Q9Y251	543 aa		13.28	□□□□□ -0.28
DDB1-223	ENST00000543658	EVPL	Q92817	2033 aa		13.27	□□□□□ -0.28
DDB1-223	ENST00000543658	IGKV6D-21	A0A0A0MT36	114 aa		13.27	□□□□□ -0.29
DDB1-223	ENST00000543658	FAM237A	A0A1B0GTK4	181 aa		13.27	□□□□□ -0.29
DDB1-223	ENST00000543658	ARHGEF35	A5YM69	484 aa		13.27	□□□□□ -0.29
DDB1-223	ENST00000543658		H3BRB1	525 aa		13.27	□□□□□ -0.29
DDB1-223	ENST00000543658	ADAMTS4	O75173	837 aa		13.27	□□□□□ -0.29
DDB1-223	ENST00000543658	NR1I2	O75469	434 aa		13.27	□□□□□ -0.29
DDB1-223	ENST00000543658	LYPLA2	O95372	231 aa		13.27	□□□□□ -0.29
DDB1-223	ENST00000543658	SPATA31C1	P0DKV0	1188 aa		13.27	□□□□□ -0.29
DDB1-223	ENST00000543658	LIG1	P18858	919 aa		13.27	□□□□□ -0.29
DDB1-223	ENST00000543658	CST5	P28325	142 aa	Predicted RBP	13.27	□□□□□ -0.29
DDB1-223	ENST00000543658	YWHAB	P31946	246 aa	Known RBP	13.27	□□□□□ -0.29
DDB1-223	ENST00000543658	AMPD3	Q01432	767 aa		13.27	□□□□□ -0.29
DDB1-223	ENST00000543658	MTFR1	Q15390	333 aa		13.27	□□□□□ -0.29
DDB1-223	ENST00000543658	XKR3	Q5GH77	459 aa		13.27	□□□□□ -0.29
DDB1-223	ENST00000543658	SV2B	Q7L1I2	683 aa		13.27	□□□□□ -0.29
DDB1-223	ENST00000543658	BBX	Q8WY36	941 aa	Predicted RBP	13.27	□□□□□ -0.29
DDB1-223	ENST00000543658	RAD54L	Q92698	747 aa		13.27	□□□□□ -0.29
DDB1-223	ENST00000543658	ARMC5	Q96C12	935 aa		13.27	□□□□□ -0.29
DDB1-223	ENST00000543658	ZNF333	Q96JL9	665 aa		13.27	□□□□□ -0.29
DDB1-223	ENST00000543658	DEFB118	Q96PH6	123 aa		13.27	□□□□□ -0.29
DDB1-223	ENST00000543658	MTG1	Q9BT17	334 aa	Predicted RBP	13.27	□□□□□ -0.29
DDB1-223	ENST00000543658	TMEM106C	Q9BVX2	250 aa		13.27	□□□□□ -0.29
DDB1-223	ENST00000543658	MCOLN1	Q9GZU1	580 aa		13.27	□□□□□ -0.29
DDB1-223	ENST00000543658	TUT1	Q9H6E5	874 aa	Known RBP	13.27	□□□□□ -0.29
DDB1-223	ENST00000543658	PAK6	Q9NQU5	681 aa	Predicted RBP	13.27	□□□□□ -0.29
DDB1-223	ENST00000543658	DACT1	Q9NYF0	836 aa		13.27	□□□□□ -0.29
DDB1-223	ENST00000543658	SERTAD1	Q9UHV2	236 aa		13.27	□□□□□ -0.29
DDB1-223	ENST00000543658	TELO2	Q9Y4R8	837 aa		13.27	□□□□□ -0.29
DDB1-223	ENST00000543658	MAFB	Q9Y5Q3	323 aa	Predicted RBP	13.27	□□□□□ -0.29
DDB1-223	ENST00000543658	SCN10A	Q9Y5Y9	1956 aa		13.27	□□□□□ -0.29
DDB1-223	ENST00000543658	MOXD2P	A6NHM9	499 aa		13.26	□□□□□ -0.29
DDB1-223	ENST00000543658		E9PMD0	336 aa		13.26	□□□□□ -0.29
DDB1-223	ENST00000543658	HBP1	O60381	514 aa		13.26	□□□□□ -0.29
DDB1-223	ENST00000543658	CABYR	O75952	493 aa		13.26	□□□□□ -0.29
DDB1-223	ENST00000543658	EYA4	O95677	639 aa		13.26	□□□□□ -0.29
DDB1-223	ENST00000543658	KRT18	P05783	430 aa	Known RBP	13.26	□□□□□ -0.29
DDB1-223	ENST00000543658	HOXD8	P13378	290 aa	Predicted RBP	13.26	□□□□□ -0.29
DDB1-223	ENST00000543658	DHX8	Q14562	1220 aa	Known RBP	13.26	□□□□□ -0.29
DDB1-223	ENST00000543658	LRRC41	Q15345	812 aa		13.26	□□□□□ -0.29
DDB1-223	ENST00000543658	ECM1	Q16610	540 aa		13.26	□□□□□ -0.29
DDB1-223	ENST00000543658	XKR9	Q5GH70	373 aa		13.26	□□□□□ -0.29
DDB1-223	ENST00000543658	FMR1NB	Q8N0W7	255 aa	Predicted RBP	13.26	□□□□□ -0.29
DDB1-223	ENST00000543658	PIGO	Q8TEQ8	1089 aa		13.26	□□□□□ -0.29
DDB1-223	ENST00000543658	VTI1A	Q96AJ9	217 aa		13.26	□□□□□ -0.29
DDB1-223	ENST00000543658	CEP170P1	Q96L14	293 aa		13.26	□□□□□ -0.29
DDB1-223	ENST00000543658	PCYT2	Q99447	389 aa		13.26	□□□□□ -0.29
DDB1-223	ENST00000543658	TNMD	Q9H2S6	317 aa		13.26	□□□□□ -0.29
DDB1-223	ENST00000543658	ANKEF1	Q9NU02	776 aa		13.26	□□□□□ -0.29
DDB1-223	ENST00000543658	TRIP12	Q14669	1992 aa	Predicted RBP	13.25	□□□□□ -0.29
DDB1-223	ENST00000543658		A0A087X0B3	334 aa		13.25	□□□□□ -0.29
DDB1-223	ENST00000543658	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	13.25	□□□□□ -0.29
DDB1-223	ENST00000543658	MYADML2	A6NDP7	307 aa		13.25	□□□□□ -0.29
DDB1-223	ENST00000543658	F2	P00734	622 aa		13.25	□□□□□ -0.29
DDB1-223	ENST00000543658	ASGR1	P07306	291 aa		13.25	□□□□□ -0.29
DDB1-223	ENST00000543658	SLFN14	P0C7P3	912 aa		13.25	□□□□□ -0.29
DDB1-223	ENST00000543658	PLA2G4B	P0C869	781 aa		13.25	□□□□□ -0.29
DDB1-223	ENST00000543658	XRCC6	P12956	609 aa	Known RBP eCLIP	13.25	□□□□□ -0.29
DDB1-223	ENST00000543658	PSEN2	P49810	448 aa		13.25	□□□□□ -0.29
DDB1-223	ENST00000543658	NKX3-2	P78367	333 aa		13.25	□□□□□ -0.29
DDB1-223	ENST00000543658	PURA	Q00577	322 aa	Known RBP	13.25	□□□□□ -0.29
DDB1-223	ENST00000543658	MCM6	Q14566	821 aa		13.25	□□□□□ -0.29
DDB1-223	ENST00000543658	MFSD10	Q14728	455 aa		13.25	□□□□□ -0.29
DDB1-223	ENST00000543658	PLCB4	Q15147	1175 aa		13.25	□□□□□ -0.29
DDB1-223	ENST00000543658	KCNA10	Q16322	511 aa		13.25	□□□□□ -0.29
DDB1-223	ENST00000543658	KLHL40	Q2TBA0	621 aa		13.25	□□□□□ -0.29
DDB1-223	ENST00000543658	MTERF2	Q49AM1	385 aa		13.25	□□□□□ -0.29
DDB1-223	ENST00000543658	KRBA2	Q6ZNG9	492 aa		13.25	□□□□□ -0.29
DDB1-223	ENST00000543658	EXOC8	Q8IYI6	725 aa		13.25	□□□□□ -0.29
DDB1-223	ENST00000543658	GPT2	Q8TD30	523 aa		13.25	□□□□□ -0.29
DDB1-223	ENST00000543658	ATP8B4	Q8TF62	1192 aa		13.25	□□□□□ -0.29
DDB1-223	ENST00000543658	CCDC47	Q96A33	483 aa	Known RBP	13.25	□□□□□ -0.29
DDB1-223	ENST00000543658	TIGD1	Q96MW7	591 aa		13.25	□□□□□ -0.29
DDB1-223	ENST00000543658	C16orf70	Q9BSU1	422 aa		13.25	□□□□□ -0.29
DDB1-223	ENST00000543658	TSEN34	Q9BSV6	310 aa	Known RBP	13.25	□□□□□ -0.29
DDB1-223	ENST00000543658	NUP62CL	Q9H1M0	184 aa		13.25	□□□□□ -0.29
DDB1-223	ENST00000543658	BHMT2	Q9H2M3	363 aa		13.25	□□□□□ -0.29
DDB1-223	ENST00000543658	BMP2K	Q9NSY1	1161 aa	Predicted RBP	13.25	□□□□□ -0.29
DDB1-223	ENST00000543658	WRAP73	Q9P2S5	460 aa	Predicted RBP	13.25	□□□□□ -0.29
DDB1-223	ENST00000543658	DBR1	Q9UK59	544 aa	Known RBP	13.25	□□□□□ -0.29

Retrieved 100 of 20,778 RNA–protein pairs in 19 ms