RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 SEC23AQ15436 765 aa5.89□□□□□ -1.47
CLIP1-217ENST00000543205 NFE2Q16621 373 aaPredicted RBP5.89□□□□□ -1.47
CLIP1-217ENST00000543205 CCDC96Q2M329 555 aa5.89□□□□□ -1.47
CLIP1-217ENST00000543205 C10orf62Q5T681 223 aaPredicted RBP5.89□□□□□ -1.47
CLIP1-217ENST00000543205 SAMD5Q5TGI4 173 aa5.89□□□□□ -1.47
CLIP1-217ENST00000543205 SV2AQ7L0J3 742 aa5.89□□□□□ -1.47
CLIP1-217ENST00000543205 CATIPQ7Z7H3 387 aa5.89□□□□□ -1.47
CLIP1-217ENST00000543205 IGDCC4Q8TDY8 1250 aa5.89□□□□□ -1.47
CLIP1-217ENST00000543205 DCAF4Q8WV16 495 aa5.89□□□□□ -1.47
CLIP1-217ENST00000543205 NUP88Q99567 741 aaPredicted RBP5.89□□□□□ -1.47
CLIP1-217ENST00000543205 P2RX7Q99572 595 aaKnown RBP5.89□□□□□ -1.47
CLIP1-217ENST00000543205 LRRC2Q9BYS8 371 aa5.89□□□□□ -1.47
CLIP1-217ENST00000543205 C22orf23Q9BZE7 217 aa5.89□□□□□ -1.47
CLIP1-217ENST00000543205 HOXC10Q9NYD6 342 aa5.89□□□□□ -1.47
CLIP1-217ENST00000543205 SIRPGQ9P1W8 387 aa5.89□□□□□ -1.47
CLIP1-217ENST00000543205 CTDP1Q9Y5B0 961 aaPredicted RBP5.89□□□□□ -1.47
CLIP1-217ENST00000543205 PCDHGC4Q9Y5F7 938 aa5.89□□□□□ -1.47
CLIP1-217ENST00000543205 CYP46A1Q9Y6A2 500 aa5.89□□□□□ -1.47
CLIP1-217ENST00000543205 AK5Q9Y6K8 562 aa5.89□□□□□ -1.47
CLIP1-217ENST00000543205 GREB1LQ9C091 1923 aaPredicted RBP5.89□□□□□ -1.47
CLIP1-217ENST00000543205 TMEM232C9JQI7 657 aa5.89□□□□□ -1.47
CLIP1-217ENST00000543205 SH2B2O14492 632 aaPredicted RBP5.89□□□□□ -1.47
CLIP1-217ENST00000543205 TLR2O60603 784 aa5.89□□□□□ -1.47
CLIP1-217ENST00000543205 SSBP05455 408 aaKnown RBP eCLIP5.89□□□□□ -1.47
CLIP1-217ENST00000543205 CPA1P15085 419 aa5.89□□□□□ -1.47
CLIP1-217ENST00000543205 RPS6KB1P23443 525 aa5.89□□□□□ -1.47
CLIP1-217ENST00000543205 GCLCP48506 637 aaPredicted RBP5.89□□□□□ -1.47
CLIP1-217ENST00000543205 ARSDP51689 593 aa5.89□□□□□ -1.47
CLIP1-217ENST00000543205 RAB33AQ14088 237 aa5.89□□□□□ -1.47
CLIP1-217ENST00000543205 MEI1Q5TIA1 1274 aa5.89□□□□□ -1.47
CLIP1-217ENST00000543205 FOXR1Q6PIV2 292 aa5.89□□□□□ -1.47
CLIP1-217ENST00000543205 SYNE3Q6ZMZ3 975 aa5.89□□□□□ -1.47
CLIP1-217ENST00000543205 Q6ZUG5 572 aa5.89□□□□□ -1.47
CLIP1-217ENST00000543205 KCTD1Q719H9 257 aa5.89□□□□□ -1.47
CLIP1-217ENST00000543205 RUFY3Q7L099 469 aa5.89□□□□□ -1.47
CLIP1-217ENST00000543205 ATCAYQ86WG3 371 aa5.89□□□□□ -1.47
CLIP1-217ENST00000543205 CHURC1Q8WUH1 139 aa5.89□□□□□ -1.47
CLIP1-217ENST00000543205 ALKBH8Q96BT7 664 aaKnown RBP5.89□□□□□ -1.47
CLIP1-217ENST00000543205 TCEANC2Q96MN5 208 aa5.89□□□□□ -1.47
CLIP1-217ENST00000543205 CITED4Q96RK1 184 aa5.89□□□□□ -1.47
CLIP1-217ENST00000543205 DNAJC7Q99615 494 aa5.89□□□□□ -1.47
CLIP1-217ENST00000543205 SLF1Q9BQI6 1058 aa5.89□□□□□ -1.47
CLIP1-217ENST00000543205 TM6SF1Q9BZW5 370 aa5.89□□□□□ -1.47
CLIP1-217ENST00000543205 LY9Q9HBG7 655 aa5.89□□□□□ -1.47
CLIP1-217ENST00000543205 BRD7Q9NPI1 651 aa5.89□□□□□ -1.47
CLIP1-217ENST00000543205 AVENQ9NQS1 362 aaPredicted RBP5.89□□□□□ -1.47
CLIP1-217ENST00000543205 CPA4Q9UI42 421 aa5.89□□□□□ -1.47
CLIP1-217ENST00000543205 FEM1BQ9UK73 627 aa5.89□□□□□ -1.47
CLIP1-217ENST00000543205 FRMPD2Q68DX3 1309 aaPredicted RBP5.88□□□□□ -1.47
CLIP1-217ENST00000543205 GPR25O00155 361 aa5.88□□□□□ -1.47
CLIP1-217ENST00000543205 PARP1P09874 1014 aaKnown RBP5.88□□□□□ -1.47
CLIP1-217ENST00000543205 FAM157BP0CG42 384 aa5.88□□□□□ -1.47
CLIP1-217ENST00000543205 PDHBP11177 359 aa5.88□□□□□ -1.47
CLIP1-217ENST00000543205 CD53P19397 219 aa5.88□□□□□ -1.47
CLIP1-217ENST00000543205 LIFRP42702 1097 aa5.88□□□□□ -1.47
CLIP1-217ENST00000543205 STAT2P52630 851 aa5.88□□□□□ -1.47
CLIP1-217ENST00000543205 HERVK_113P62684 666 aa5.88□□□□□ -1.47
CLIP1-217ENST00000543205 SQSTM1Q13501 440 aa5.88□□□□□ -1.47
CLIP1-217ENST00000543205 MYBPC2Q14324 1141 aa5.88□□□□□ -1.47
CLIP1-217ENST00000543205 GPATCH4Q5T3I0 446 aaKnown RBP5.88□□□□□ -1.47
CLIP1-217ENST00000543205 FAM160B2Q86V87 743 aa5.88□□□□□ -1.47
CLIP1-217ENST00000543205 ANKRD13CQ8N6S4 541 aa5.88□□□□□ -1.47
CLIP1-217ENST00000543205 NUP133Q8WUM0 1156 aa5.88□□□□□ -1.47
CLIP1-217ENST00000543205 TRERF1Q96PN7 1200 aa5.88□□□□□ -1.47
CLIP1-217ENST00000543205 PSMG3-AS1Q96PY0 264 aa5.88□□□□□ -1.47
CLIP1-217ENST00000543205 TRIM55Q9BYV6 548 aa5.88□□□□□ -1.47
CLIP1-217ENST00000543205 R3HDMLQ9H3Y0 253 aa5.88□□□□□ -1.47
CLIP1-217ENST00000543205 PDRG1Q9NUG6 133 aa5.88□□□□□ -1.47
CLIP1-217ENST00000543205 FAM13BQ9NYF5 915 aa5.88□□□□□ -1.47
CLIP1-217ENST00000543205 KLF15Q9UIH9 416 aa5.88□□□□□ -1.47
CLIP1-217ENST00000543205 PPP1R9AQ9ULJ8 1098 aa5.88□□□□□ -1.47
CLIP1-217ENST00000543205 NAP1L2Q9ULW6 460 aaPredicted RBP5.88□□□□□ -1.47
CLIP1-217ENST00000543205 SLC12A7Q9Y666 1083 aa5.88□□□□□ -1.47
CLIP1-217ENST00000543205 MYPNQ86TC9 1320 aa5.88□□□□□ -1.47
CLIP1-217ENST00000543205 LOC285556D6RIA3 1793 aa5.87□□□□□ -1.47
CLIP1-217ENST00000543205 ZBED4O75132 1171 aa5.87□□□□□ -1.47
CLIP1-217ENST00000543205 DDAH1O94760 285 aa5.87□□□□□ -1.47
CLIP1-217ENST00000543205 BPNT1O95861 308 aa5.87□□□□□ -1.47
CLIP1-217ENST00000543205 GOLGA8HP0CJ92 632 aa5.87□□□□□ -1.47
CLIP1-217ENST00000543205 CALM1P0DP23 149 aa5.87□□□□□ -1.47
CLIP1-217ENST00000543205 CALM2P0DP24 149 aa5.87□□□□□ -1.47
CLIP1-217ENST00000543205 CALM3P0DP25 149 aa5.87□□□□□ -1.47
CLIP1-217ENST00000543205 SNHG28P0DPA3 235 aa5.87□□□□□ -1.47
CLIP1-217ENST00000543205 EPB42P16452 691 aa5.87□□□□□ -1.47
CLIP1-217ENST00000543205 ZNF543Q08ER8 600 aa5.87□□□□□ -1.47
CLIP1-217ENST00000543205 COL9A3Q14050 684 aaPredicted RBP5.87□□□□□ -1.47
CLIP1-217ENST00000543205 UBAP2LQ14157 1087 aaKnown RBP5.87□□□□□ -1.47
CLIP1-217ENST00000543205 PLS1Q14651 629 aa5.87□□□□□ -1.47
CLIP1-217ENST00000543205 KIF22Q14807 665 aa5.87□□□□□ -1.47
CLIP1-217ENST00000543205 ASPRV1Q53RT3 343 aa5.87□□□□□ -1.47
CLIP1-217ENST00000543205 ARSHQ5FYA8 562 aa5.87□□□□□ -1.47
CLIP1-217ENST00000543205 ALG1LQ6GMV1 187 aa5.87□□□□□ -1.47
CLIP1-217ENST00000543205 C17orf99Q6UX52 265 aa5.87□□□□□ -1.47
CLIP1-217ENST00000543205 MB21D1Q8N884 522 aa5.87□□□□□ -1.47
CLIP1-217ENST00000543205 GPRC5AQ8NFJ5 357 aa5.87□□□□□ -1.47
CLIP1-217ENST00000543205 GPR152Q8TDT2 470 aa5.87□□□□□ -1.47
CLIP1-217ENST00000543205 EDEM1Q92611 657 aa5.87□□□□□ -1.47
CLIP1-217ENST00000543205 ATG4CQ96DT6 458 aa5.87□□□□□ -1.47
CLIP1-217ENST00000543205 ABHD17AQ96GS6 310 aa5.87□□□□□ -1.47
CLIP1-217ENST00000543205 PAGR1Q9BTK6 254 aa5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms