RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 CABP7Q86V35 215 aa19.18■□□□□ 0.66
LIG1-204ENST00000542460 ATP8B4Q8TF62 1192 aa19.18■□□□□ 0.66
LIG1-204ENST00000542460 BBXQ8WY36 941 aaPredicted RBP19.18■□□□□ 0.66
LIG1-204ENST00000542460 FAM167AQ96KS9 214 aa19.18■□□□□ 0.66
LIG1-204ENST00000542460 MMTAG2Q9BU76 263 aaKnown RBP19.18■□□□□ 0.66
LIG1-204ENST00000542460 SEZ6LQ9BYH1 1024 aa19.18■□□□□ 0.66
LIG1-204ENST00000542460 NRBP2Q9NSY0 501 aa19.18■□□□□ 0.66
LIG1-204ENST00000542460 A0A0U1RQG5 324 aaPredicted RBP19.17■□□□□ 0.66
LIG1-204ENST00000542460 PRKCEQ02156 737 aa19.17■□□□□ 0.66
LIG1-204ENST00000542460 ITGA7Q13683 1181 aa19.17■□□□□ 0.66
LIG1-204ENST00000542460 XKR3Q5GH77 459 aa19.17■□□□□ 0.66
LIG1-204ENST00000542460 ADALQ6DHV7 355 aa19.17■□□□□ 0.66
LIG1-204ENST00000542460 NFRKBQ6P4R8 1299 aa19.17■□□□□ 0.66
LIG1-204ENST00000542460 CLEC17AQ6ZS10 378 aa19.17■□□□□ 0.66
LIG1-204ENST00000542460 C7orf31Q8N865 590 aa19.17■□□□□ 0.66
LIG1-204ENST00000542460 SYMPKQ92797 1274 aaKnown RBP19.17■□□□□ 0.66
LIG1-204ENST00000542460 EPSTI1Q96J88 318 aa19.17■□□□□ 0.66
LIG1-204ENST00000542460 CCSER1Q9C0I3 900 aa19.17■□□□□ 0.66
LIG1-204ENST00000542460 WRAP73Q9P2S5 460 aaPredicted RBP19.17■□□□□ 0.66
LIG1-204ENST00000542460 TRPC6Q9Y210 931 aa19.17■□□□□ 0.66
LIG1-204ENST00000542460 GRIN2DO15399 1336 aa19.16■□□□□ 0.66
LIG1-204ENST00000542460 KDM3AQ9Y4C1 1321 aa19.16■□□□□ 0.66
LIG1-204ENST00000542460 HBP1O60381 514 aa19.16■□□□□ 0.66
LIG1-204ENST00000542460 OATP04181 439 aa19.16■□□□□ 0.66
LIG1-204ENST00000542460 TXLNAP40222 546 aa19.16■□□□□ 0.66
LIG1-204ENST00000542460 TRMT1LQ7Z2T5 733 aaKnown RBP19.16■□□□□ 0.66
LIG1-204ENST00000542460 UBE2Q1Q7Z7E8 422 aa19.16■□□□□ 0.66
LIG1-204ENST00000542460 KCTD17Q8N5Z5 321 aa19.16■□□□□ 0.66
LIG1-204ENST00000542460 SLC43A3Q8NBI5 491 aa19.16■□□□□ 0.66
LIG1-204ENST00000542460 CALML4Q96GE6 196 aa19.16■□□□□ 0.66
LIG1-204ENST00000542460 NT5C3AQ9H0P0 336 aa19.16■□□□□ 0.66
LIG1-204ENST00000542460 DDX11L8A8MPP1 907 aa19.15■□□□□ 0.66
LIG1-204ENST00000542460 STBD1O95210 358 aa19.15■□□□□ 0.66
LIG1-204ENST00000542460 SMIM10L2AP0DMW4 78 aa19.15■□□□□ 0.66
LIG1-204ENST00000542460 SMIM10L2BP0DMW5 78 aa19.15■□□□□ 0.66
LIG1-204ENST00000542460 XRCC6P12956 609 aaKnown RBP eCLIP19.15■□□□□ 0.66
LIG1-204ENST00000542460 PTPN11Q06124 597 aaPredicted RBP19.15■□□□□ 0.66
LIG1-204ENST00000542460 HYIQ5T013 277 aa19.15■□□□□ 0.66
LIG1-204ENST00000542460 SHC4Q6S5L8 630 aa19.15■□□□□ 0.66
LIG1-204ENST00000542460 SLC39A5Q6ZMH5 540 aa19.15■□□□□ 0.66
LIG1-204ENST00000542460 USP49Q70CQ1 688 aa19.15■□□□□ 0.66
LIG1-204ENST00000542460 OTUD6AQ7L8S5 288 aa19.15■□□□□ 0.66
LIG1-204ENST00000542460 SESTD1Q86VW0 696 aa19.15■□□□□ 0.66
LIG1-204ENST00000542460 CDK5RAP3Q96JB5 506 aa19.15■□□□□ 0.66
LIG1-204ENST00000542460 NACC1Q96RE7 527 aa19.15■□□□□ 0.66
LIG1-204ENST00000542460 KIAA1024Q9UPX6 916 aa19.15■□□□□ 0.66
LIG1-204ENST00000542460 NRCAMQ92823 1304 aa19.15■□□□□ 0.66
LIG1-204ENST00000542460 ARVCFO00192 962 aa19.15■□□□□ 0.66
LIG1-204ENST00000542460 INSRRP14616 1297 aa19.15■□□□□ 0.66
LIG1-204ENST00000542460 YWHABP31946 246 aaKnown RBP19.15■□□□□ 0.66
LIG1-204ENST00000542460 ZRSR1Q15695 479 aaKnown RBP19.15■□□□□ 0.66
LIG1-204ENST00000542460 ECM1Q16610 540 aa19.15■□□□□ 0.66
LIG1-204ENST00000542460 C1orf53Q5VUE5 145 aa19.15■□□□□ 0.66
LIG1-204ENST00000542460 POTEGQ6S5H5 508 aa19.15■□□□□ 0.66
LIG1-204ENST00000542460 ANO5Q75V66 913 aa19.15■□□□□ 0.66
LIG1-204ENST00000542460 RASSF8Q8NHQ8 419 aa19.15■□□□□ 0.66
LIG1-204ENST00000542460 NIFKQ9BYG3 293 aaKnown RBP19.15■□□□□ 0.66
LIG1-204ENST00000542460 DDX19AQ9NUU7 478 aaKnown RBP19.15■□□□□ 0.66
LIG1-204ENST00000542460 HDAC6Q9UBN7 1215 aa19.15■□□□□ 0.66
LIG1-204ENST00000542460 CCDC39Q9UFE4 941 aa19.15■□□□□ 0.66
LIG1-204ENST00000542460 GTF2IRD1Q9UHL9 959 aa19.15■□□□□ 0.66
LIG1-204ENST00000542460 GOLGA6L4A6NEF3 574 aa19.14■□□□□ 0.65
LIG1-204ENST00000542460 RRN3P2A6NIE6 340 aa19.14■□□□□ 0.65
LIG1-204ENST00000542460 CMA1P23946 247 aa19.14■□□□□ 0.65
LIG1-204ENST00000542460 CDK7P50613 346 aa19.14■□□□□ 0.65
LIG1-204ENST00000542460 ATN1P54259 1190 aaPredicted RBP19.14■□□□□ 0.65
LIG1-204ENST00000542460 PPFIA1Q13136 1202 aa19.14■□□□□ 0.65
LIG1-204ENST00000542460 GRB10Q13322 594 aa19.14■□□□□ 0.65
LIG1-204ENST00000542460 FAM47CQ5HY64 1035 aa19.14■□□□□ 0.65
LIG1-204ENST00000542460 ZNF484Q5JVG2 852 aa19.14■□□□□ 0.65
LIG1-204ENST00000542460 RESP18Q5W5W9 173 aa19.14■□□□□ 0.65
LIG1-204ENST00000542460 GBP4Q96PP9 640 aa19.14■□□□□ 0.65
LIG1-204ENST00000542460 PNMA5Q96PV4 448 aa19.14■□□□□ 0.65
LIG1-204ENST00000542460 ANKEF1Q9NU02 776 aa19.14■□□□□ 0.65
LIG1-204ENST00000542460 SEPT9Q9UHD8 586 aaPredicted RBP19.14■□□□□ 0.65
LIG1-204ENST00000542460 A0A1W2PQ27 194 aa19.13■□□□□ 0.65
LIG1-204ENST00000542460 A0A1W2PQ64 194 aa19.13■□□□□ 0.65
LIG1-204ENST00000542460 A0A1W2PQD8 194 aa19.13■□□□□ 0.65
LIG1-204ENST00000542460 GNAT1P11488 350 aa19.13■□□□□ 0.65
LIG1-204ENST00000542460 SNX17Q15036 470 aa19.13■□□□□ 0.65
LIG1-204ENST00000542460 KARSQ15046 597 aaKnown RBP19.13■□□□□ 0.65
LIG1-204ENST00000542460 GRIK4Q16099 956 aa19.13■□□□□ 0.65
LIG1-204ENST00000542460 TMEM87AQ8NBN3 555 aa19.13■□□□□ 0.65
LIG1-204ENST00000542460 PIGOQ8TEQ8 1089 aa19.13■□□□□ 0.65
LIG1-204ENST00000542460 PPP1R13LQ8WUF5 828 aa19.13■□□□□ 0.65
LIG1-204ENST00000542460 SETD4Q9NVD3 440 aa19.13■□□□□ 0.65
LIG1-204ENST00000542460 FAM13BQ9NYF5 915 aa19.13■□□□□ 0.65
LIG1-204ENST00000542460 DNM3Q9UQ16 869 aa19.13■□□□□ 0.65
LIG1-204ENST00000542460 COL1A2P08123 1366 aa19.13■□□□□ 0.65
LIG1-204ENST00000542460 C17orf102A2RUQ5 167 aa19.12■□□□□ 0.65
LIG1-204ENST00000542460 ZBTB39O15060 712 aa19.12■□□□□ 0.65
LIG1-204ENST00000542460 HOXC8P31273 242 aa19.12■□□□□ 0.65
LIG1-204ENST00000542460 TMEM119Q4V9L6 283 aa19.12■□□□□ 0.65
LIG1-204ENST00000542460 PLIN2Q99541 437 aa19.12■□□□□ 0.65
LIG1-204ENST00000542460 DBR1Q9UK59 544 aaKnown RBP19.12■□□□□ 0.65
LIG1-204ENST00000542460 PPME1Q9Y570 386 aa19.12■□□□□ 0.65
LIG1-204ENST00000542460 SCN10AQ9Y5Y9 1956 aa19.12■□□□□ 0.65
LIG1-204ENST00000542460 MROH7Q68CQ1 1323 aa19.12■□□□□ 0.65
LIG1-204ENST00000542460 TMEM150BA6NC51 233 aa19.11■□□□□ 0.65
LIG1-204ENST00000542460 ZBTB42B2RXF5 422 aa19.11■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms