RNA–Protein interactions for RNA: ENST00000542274.5

CDH3-203, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 2,746 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-203ENST00000542274 PLCD1P51178 756 aa12.11□□□□□ -0.47
CDH3-203ENST00000542274 POLE2P56282 527 aa12.11□□□□□ -0.47
CDH3-203ENST00000542274 WASHC5Q12768 1159 aa12.11□□□□□ -0.47
CDH3-203ENST00000542274 PNOCQ13519 176 aa12.11□□□□□ -0.47
CDH3-203ENST00000542274 LONRF1Q17RB8 773 aa12.11□□□□□ -0.47
CDH3-203ENST00000542274 CCDC155Q8N6L0 562 aa12.11□□□□□ -0.47
CDH3-203ENST00000542274 RABGGTAQ92696 567 aa12.11□□□□□ -0.47
CDH3-203ENST00000542274 GBP3Q9H0R5 595 aa12.11□□□□□ -0.47
CDH3-203ENST00000542274 MRPL46Q9H2W6 279 aaKnown RBP12.11□□□□□ -0.47
CDH3-203ENST00000542274 SUGCTQ9HAC7 445 aa12.11□□□□□ -0.47
CDH3-203ENST00000542274 SH3GLB1Q9Y371 365 aa12.11□□□□□ -0.47
CDH3-203ENST00000542274 DPPA5A6NC42 116 aa12.1□□□□□ -0.47
CDH3-203ENST00000542274 USP17L3A6NCW0 530 aa12.1□□□□□ -0.47
CDH3-203ENST00000542274 USP17L4A6NCW7 530 aa12.1□□□□□ -0.47
CDH3-203ENST00000542274 TSPY2A6NKD2 308 aa12.1□□□□□ -0.47
CDH3-203ENST00000542274 G3V3G9 751 aa12.1□□□□□ -0.47
CDH3-203ENST00000542274 CCDC159P0C7I6 412 aa12.1□□□□□ -0.47
CDH3-203ENST00000542274 USP5P45974 858 aa12.1□□□□□ -0.47
CDH3-203ENST00000542274 DCAF8Q5TAQ9 597 aa12.1□□□□□ -0.47
CDH3-203ENST00000542274 SLC2A7Q6PXP3 512 aa12.1□□□□□ -0.47
CDH3-203ENST00000542274 CAPN12Q6ZSI9 719 aa12.1□□□□□ -0.47
CDH3-203ENST00000542274 USP17L1Q7RTZ2 530 aa12.1□□□□□ -0.47
CDH3-203ENST00000542274 SRBD1Q8N5C6 995 aaKnown RBP12.1□□□□□ -0.47
CDH3-203ENST00000542274 HNRNPLLQ8WVV9 542 aaKnown RBP12.1□□□□□ -0.47
CDH3-203ENST00000542274 NDNQ99608 321 aa12.1□□□□□ -0.47
CDH3-203ENST00000542274 OSBPL1AQ9BXW6 950 aa12.1□□□□□ -0.47
CDH3-203ENST00000542274 NAT10Q9H0A0 1025 aaKnown RBP12.1□□□□□ -0.47
CDH3-203ENST00000542274 ZNF180Q9UJW8 692 aa12.1□□□□□ -0.47
CDH3-203ENST00000542274 NID2Q14112 1375 aa12.1□□□□□ -0.47
CDH3-203ENST00000542274 LRRD1A4D1F6 860 aa12.1□□□□□ -0.47
CDH3-203ENST00000542274 CCDC166P0CW27 439 aa12.1□□□□□ -0.47
CDH3-203ENST00000542274 CMA1P23946 247 aa12.1□□□□□ -0.47
CDH3-203ENST00000542274 SYKP43405 635 aa12.1□□□□□ -0.47
CDH3-203ENST00000542274 PMS2P54278 862 aa12.1□□□□□ -0.47
CDH3-203ENST00000542274 CYP4A11Q02928 519 aa12.1□□□□□ -0.47
CDH3-203ENST00000542274 CNGA3Q16281 694 aa12.1□□□□□ -0.47
CDH3-203ENST00000542274 STYK1Q6J9G0 422 aa12.1□□□□□ -0.47
CDH3-203ENST00000542274 RSRC2Q7L4I2 434 aaKnown RBP12.1□□□□□ -0.47
CDH3-203ENST00000542274 CERS5Q8N5B7 392 aa12.1□□□□□ -0.47
CDH3-203ENST00000542274 MAML3Q96JK9 1138 aa12.1□□□□□ -0.47
CDH3-203ENST00000542274 AS3MTQ9HBK9 375 aa12.1□□□□□ -0.47
CDH3-203ENST00000542274 DKK3Q9UBP4 350 aa12.1□□□□□ -0.47
CDH3-203ENST00000542274 L1RE1Q9UN81 338 aa12.1□□□□□ -0.47
CDH3-203ENST00000542274 TTLL3Q9Y4R7 772 aa12.1□□□□□ -0.47
CDH3-203ENST00000542274 PHLPP2Q6ZVD8 1323 aa12.1□□□□□ -0.47
CDH3-203ENST00000542274 KIAA1551Q9HCM1 1747 aa12.1□□□□□ -0.47
CDH3-203ENST00000542274 CCDC194A0A1B0GVG4 234 aa12.1□□□□□ -0.47
CDH3-203ENST00000542274 SLC3A2P08195 630 aaKnown RBP12.1□□□□□ -0.47
CDH3-203ENST00000542274 BTDP43251 543 aa12.1□□□□□ -0.47
CDH3-203ENST00000542274 PSMC4P43686 418 aa12.1□□□□□ -0.47
CDH3-203ENST00000542274 PDE6CP51160 858 aa12.1□□□□□ -0.47
CDH3-203ENST00000542274 GSTM4Q03013 218 aa12.1□□□□□ -0.47
CDH3-203ENST00000542274 PTPN21Q16825 1174 aa12.1□□□□□ -0.47
CDH3-203ENST00000542274 RNF187Q5TA31 235 aaPredicted RBP12.1□□□□□ -0.47
CDH3-203ENST00000542274 CCBE1Q6UXH8 406 aaPredicted RBP12.1□□□□□ -0.47
CDH3-203ENST00000542274 HOMER1Q86YM7 354 aa12.1□□□□□ -0.47
CDH3-203ENST00000542274 GRAMD1CQ8IYS0 662 aa12.1□□□□□ -0.47
CDH3-203ENST00000542274 CTAGE1Q96RT6 745 aa12.1□□□□□ -0.47
CDH3-203ENST00000542274 CPVLQ9H3G5 476 aa12.1□□□□□ -0.47
CDH3-203ENST00000542274 IL17RBQ9NRM6 502 aa12.1□□□□□ -0.47
CDH3-203ENST00000542274 CEP131Q9UPN4 1083 aa12.1□□□□□ -0.47
CDH3-203ENST00000542274 LAMB1P07942 1786 aa12.09□□□□□ -0.47
CDH3-203ENST00000542274 GPR75-ASB3A0A0A6YYF3 556 aa12.09□□□□□ -0.47
CDH3-203ENST00000542274 GOLGA6L7A0A1B0GV03 622 aa12.09□□□□□ -0.47
CDH3-203ENST00000542274 TARSL2A2RTX5 802 aaKnown RBP12.09□□□□□ -0.47
CDH3-203ENST00000542274 SPDYE5A6NIY4 337 aa12.09□□□□□ -0.47
CDH3-203ENST00000542274 BECN2A8MW95 431 aa12.09□□□□□ -0.47
CDH3-203ENST00000542274 TUBB4AP04350 444 aa12.09□□□□□ -0.47
CDH3-203ENST00000542274 FGRP09769 529 aa12.09□□□□□ -0.47
CDH3-203ENST00000542274 SCNN1DP51172 638 aa12.09□□□□□ -0.47
CDH3-203ENST00000542274 TFAP4Q01664 338 aa12.09□□□□□ -0.47
CDH3-203ENST00000542274 IFFO1Q0D2I5 559 aa12.09□□□□□ -0.47
CDH3-203ENST00000542274 YTHDF3Q7Z739 585 aaKnown RBP12.09□□□□□ -0.47
CDH3-203ENST00000542274 FOXP4Q8IVH2 680 aaPredicted RBP12.09□□□□□ -0.47
CDH3-203ENST00000542274 ZC3H15Q8WU90 426 aaKnown RBP12.09□□□□□ -0.47
CDH3-203ENST00000542274 DDX27Q96GQ7 796 aaKnown RBP12.09□□□□□ -0.47
CDH3-203ENST00000542274 RTFDC1Q9BY42 306 aaPredicted RBP12.09□□□□□ -0.47
CDH3-203ENST00000542274 NRDE2Q9H7Z3 1164 aa12.09□□□□□ -0.47
CDH3-203ENST00000542274 ASB3Q9Y575 518 aa12.09□□□□□ -0.47
CDH3-203ENST00000542274 MTA2O94776 668 aa12.09□□□□□ -0.47
CDH3-203ENST00000542274 PRPF6O94906 941 aaKnown RBP12.09□□□□□ -0.47
CDH3-203ENST00000542274 ANP32DO95626 131 aa12.09□□□□□ -0.47
CDH3-203ENST00000542274 TXLNAP40222 546 aa12.09□□□□□ -0.47
CDH3-203ENST00000542274 CLK1P49759 484 aaKnown RBP12.09□□□□□ -0.47
CDH3-203ENST00000542274 CASP8Q14790 479 aa12.09□□□□□ -0.47
CDH3-203ENST00000542274 RASA2Q15283 850 aa12.09□□□□□ -0.47
CDH3-203ENST00000542274 INAQ16352 499 aa12.09□□□□□ -0.47
CDH3-203ENST00000542274 E4F1Q66K89 784 aaPredicted RBP12.09□□□□□ -0.47
CDH3-203ENST00000542274 C11orf74Q86VG3 221 aa12.09□□□□□ -0.47
CDH3-203ENST00000542274 OSTM1Q86WC4 334 aa12.09□□□□□ -0.47
CDH3-203ENST00000542274 ERICH1Q86X53 443 aa12.09□□□□□ -0.47
CDH3-203ENST00000542274 ESX1Q8N693 406 aa12.09□□□□□ -0.47
CDH3-203ENST00000542274 LZICQ8WZA0 190 aa12.09□□□□□ -0.47
CDH3-203ENST00000542274 PPP2R3CQ969Q6 453 aa12.09□□□□□ -0.47
CDH3-203ENST00000542274 FAM167BQ9BTA0 163 aa12.09□□□□□ -0.47
CDH3-203ENST00000542274 COA1Q9GZY4 146 aa12.09□□□□□ -0.47
CDH3-203ENST00000542274 IFT122Q9HBG6 1241 aa12.09□□□□□ -0.47
CDH3-203ENST00000542274 ATP8A2Q9NTI2 1148 aa12.09□□□□□ -0.47
CDH3-203ENST00000542274 HPSEQ9Y251 543 aa12.09□□□□□ -0.47
CDH3-203ENST00000542274 NAV1Q8NEY1 1877 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms