RNA–Protein interactions for RNA: ENST00000539232.1

LMO3-220, Transcript of LIM domain only 3, humanhuman

TSL 5

Gene LMO3, Length 580 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-220ENST00000539232 NSUN7Q8NE18 718 aaKnown RBP8.24□□□□□ -1.09
LMO3-220ENST00000539232 LMBR1Q8WVP7 490 aa8.24□□□□□ -1.09
LMO3-220ENST00000539232 SLKQ9H2G2 1235 aaPredicted RBP8.24□□□□□ -1.09
LMO3-220ENST00000539232 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP8.23□□□□□ -1.09
LMO3-220ENST00000539232 MED19A0JLT2 244 aaPredicted RBP8.23□□□□□ -1.09
LMO3-220ENST00000539232 hCG_1984214I3L0E3 225 aa8.23□□□□□ -1.09
LMO3-220ENST00000539232 CPLX1O14810 134 aa8.23□□□□□ -1.09
LMO3-220ENST00000539232 SUPT20HL2P0C7V6 817 aa8.23□□□□□ -1.09
LMO3-220ENST00000539232 IL9P15248 144 aa8.23□□□□□ -1.09
LMO3-220ENST00000539232 AKAP17AQ02040 695 aaKnown RBP8.23□□□□□ -1.09
LMO3-220ENST00000539232 PTPN11Q06124 597 aaPredicted RBP8.23□□□□□ -1.09
LMO3-220ENST00000539232 AP3B2Q13367 1082 aa8.23□□□□□ -1.09
LMO3-220ENST00000539232 PUS10Q3MIT2 529 aaKnown RBP8.23□□□□□ -1.09
LMO3-220ENST00000539232 ABHD15Q6UXT9 468 aa8.23□□□□□ -1.09
LMO3-220ENST00000539232 CCDC60Q8IWA6 550 aaPredicted RBP8.23□□□□□ -1.09
LMO3-220ENST00000539232 ZNF713Q8N859 430 aaPredicted RBP8.23□□□□□ -1.09
LMO3-220ENST00000539232 GADD45GIP1Q8TAE8 222 aaPredicted RBP8.23□□□□□ -1.09
LMO3-220ENST00000539232 TBCKQ8TEA7 893 aa8.23□□□□□ -1.09
LMO3-220ENST00000539232 SEPT1Q8WYJ6 367 aa8.23□□□□□ -1.09
LMO3-220ENST00000539232 TNFRSF25Q93038 417 aa8.23□□□□□ -1.09
LMO3-220ENST00000539232 GTF3C6Q969F1 213 aa8.23□□□□□ -1.09
LMO3-220ENST00000539232 PHF20Q9BVI0 1012 aa8.23□□□□□ -1.09
LMO3-220ENST00000539232 UBE2ZQ9H832 354 aaPredicted RBP8.23□□□□□ -1.09
LMO3-220ENST00000539232 C6orf50Q9HD87 102 aa8.23□□□□□ -1.09
LMO3-220ENST00000539232 JPH1Q9HDC5 661 aaPredicted RBP8.23□□□□□ -1.09
LMO3-220ENST00000539232 FAM86C1Q9NVL1 165 aa8.23□□□□□ -1.09
LMO3-220ENST00000539232 ORC3Q9UBD5 711 aaPredicted RBP8.23□□□□□ -1.09
LMO3-220ENST00000539232 NOD1Q9Y239 953 aa8.23□□□□□ -1.09
LMO3-220ENST00000539232 ANKRD11Q6UB99 2663 aaPredicted RBP8.22□□□□□ -1.09
LMO3-220ENST00000539232 C17orf102A2RUQ5 167 aa8.22□□□□□ -1.09
LMO3-220ENST00000539232 TMEM150BA6NC51 233 aa8.22□□□□□ -1.09
LMO3-220ENST00000539232 EPOPA6NHQ4 379 aa8.22□□□□□ -1.09
LMO3-220ENST00000539232 ZBTB42B2RXF5 422 aa8.22□□□□□ -1.09
LMO3-220ENST00000539232 IPO5O00410 1097 aaKnown RBP8.22□□□□□ -1.09
LMO3-220ENST00000539232 MSH4O15457 936 aa8.22□□□□□ -1.09
LMO3-220ENST00000539232 SLC37A4O43826 429 aa8.22□□□□□ -1.09
LMO3-220ENST00000539232 LGR5O75473 907 aa8.22□□□□□ -1.09
LMO3-220ENST00000539232 ATG7O95352 703 aa8.22□□□□□ -1.09
LMO3-220ENST00000539232 CHRNA1P02708 482 aa8.22□□□□□ -1.09
LMO3-220ENST00000539232 INSRRP14616 1297 aa8.22□□□□□ -1.09
LMO3-220ENST00000539232 SELPP16109 830 aa8.22□□□□□ -1.09
LMO3-220ENST00000539232 CIITAP33076 1130 aa8.22□□□□□ -1.09
LMO3-220ENST00000539232 ZNF76P36508 570 aa8.22□□□□□ -1.09
LMO3-220ENST00000539232 THPOP40225 353 aa8.22□□□□□ -1.09
LMO3-220ENST00000539232 IGBP1P78318 339 aa8.22□□□□□ -1.09
LMO3-220ENST00000539232 DEFB103AP81534 67 aa8.22□□□□□ -1.09
LMO3-220ENST00000539232 RBL2Q08999 1139 aa8.22□□□□□ -1.09
LMO3-220ENST00000539232 NR5A1Q13285 461 aa8.22□□□□□ -1.09
LMO3-220ENST00000539232 PTK7Q13308 1070 aa8.22□□□□□ -1.09
LMO3-220ENST00000539232 PLCB4Q15147 1175 aa8.22□□□□□ -1.09
LMO3-220ENST00000539232 UGCGQ16739 394 aa8.22□□□□□ -1.09
LMO3-220ENST00000539232 INF2Q27J81 1249 aa8.22□□□□□ -1.09
LMO3-220ENST00000539232 L1TD1Q5T7N2 865 aaKnown RBP8.22□□□□□ -1.09
LMO3-220ENST00000539232 PTCRAQ6ISU1 281 aaPredicted RBP8.22□□□□□ -1.09
LMO3-220ENST00000539232 LRRC8DQ7L1W4 858 aa8.22□□□□□ -1.09
LMO3-220ENST00000539232 TRMT1LQ7Z2T5 733 aaKnown RBP8.22□□□□□ -1.09
LMO3-220ENST00000539232 BLIDQ8IZY5 108 aa8.22□□□□□ -1.09
LMO3-220ENST00000539232 ATOH1Q92858 354 aaPredicted RBP8.22□□□□□ -1.09
LMO3-220ENST00000539232 ATP6V0A1Q93050 837 aa8.22□□□□□ -1.09
LMO3-220ENST00000539232 CNTNAP3BQ96NU0 1288 aa8.22□□□□□ -1.09
LMO3-220ENST00000539232 CNTNAP3Q9BZ76 1288 aa8.22□□□□□ -1.09
LMO3-220ENST00000539232 LMCD1Q9NZU5 365 aa8.22□□□□□ -1.09
LMO3-220ENST00000539232 SLC9A2Q9UBY0 812 aa8.22□□□□□ -1.09
LMO3-220ENST00000539232 PCDHA4Q9UN74 947 aa8.22□□□□□ -1.09
LMO3-220ENST00000539232 SLC4A7Q9Y6M7 1214 aa8.22□□□□□ -1.09
LMO3-220ENST00000539232 CFAP47Q6ZTR5 3102 aa8.22□□□□□ -1.09
LMO3-220ENST00000539232 FASNP49327 2511 aaKnown RBP8.22□□□□□ -1.09
LMO3-220ENST00000539232 KMT2EQ8IZD2 1858 aa8.21□□□□□ -1.09
LMO3-220ENST00000539232 IGKV6D-21A0A0A0MT36 114 aa8.21□□□□□ -1.1
LMO3-220ENST00000539232 LCHNA4D1U4 455 aa8.21□□□□□ -1.1
LMO3-220ENST00000539232 GRXCR2A6NFK2 248 aa8.21□□□□□ -1.1
LMO3-220ENST00000539232 ZBBXA8MT70 800 aa8.21□□□□□ -1.1
LMO3-220ENST00000539232 PITPNM1O00562 1244 aa8.21□□□□□ -1.1
LMO3-220ENST00000539232 ZNF862O60290 1169 aa8.21□□□□□ -1.1
LMO3-220ENST00000539232 DEXIO95424 95 aa8.21□□□□□ -1.1
LMO3-220ENST00000539232 GUCY1B3Q02153 619 aa8.21□□□□□ -1.1
LMO3-220ENST00000539232 PPFIA1Q13136 1202 aa8.21□□□□□ -1.1
LMO3-220ENST00000539232 MKRN4PQ13434 485 aaPredicted RBP8.21□□□□□ -1.1
LMO3-220ENST00000539232 COL9A2Q14055 689 aaPredicted RBP8.21□□□□□ -1.1
LMO3-220ENST00000539232 GRIK4Q16099 956 aa8.21□□□□□ -1.1
LMO3-220ENST00000539232 SWSAP1Q6NVH7 229 aa8.21□□□□□ -1.1
LMO3-220ENST00000539232 LIN28BQ6ZN17 250 aaKnown RBP eCLIP8.21□□□□□ -1.1
LMO3-220ENST00000539232 NIPA1Q7RTP0 329 aa8.21□□□□□ -1.1
LMO3-220ENST00000539232 CCDC83Q8IWF9 413 aa8.21□□□□□ -1.1
LMO3-220ENST00000539232 TRIM22Q8IYM9 498 aa8.21□□□□□ -1.1
LMO3-220ENST00000539232 RETREG2Q8NC44 543 aa8.21□□□□□ -1.1
LMO3-220ENST00000539232 DAGLBQ8NCG7 672 aa8.21□□□□□ -1.1
LMO3-220ENST00000539232 GLG1Q92896 1179 aa8.21□□□□□ -1.1
LMO3-220ENST00000539232 CDHR1Q96JP9 859 aa8.21□□□□□ -1.1
LMO3-220ENST00000539232 SEZ6LQ9BYH1 1024 aa8.21□□□□□ -1.1
LMO3-220ENST00000539232 BACH2Q9BYV9 841 aa8.21□□□□□ -1.1
LMO3-220ENST00000539232 C22orf23Q9BZE7 217 aa8.21□□□□□ -1.1
LMO3-220ENST00000539232 FTOQ9C0B1 505 aaKnown RBP eCLIP8.21□□□□□ -1.1
LMO3-220ENST00000539232 FAM49AQ9H0Q0 323 aaPredicted RBP8.21□□□□□ -1.1
LMO3-220ENST00000539232 UNC45AQ9H3U1 944 aa8.21□□□□□ -1.1
LMO3-220ENST00000539232 CERS4Q9HA82 394 aa8.21□□□□□ -1.1
LMO3-220ENST00000539232 CDHR5Q9HBB8 845 aa8.21□□□□□ -1.1
LMO3-220ENST00000539232 RTN4Q9NQC3 1192 aaKnown RBP8.21□□□□□ -1.1
LMO3-220ENST00000539232 SH3GLB2Q9NR46 395 aa8.21□□□□□ -1.1
LMO3-220ENST00000539232 PRKAG3Q9UGI9 489 aa8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms