RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 AIFM3Q96NN9 605 aa13.09□□□□□ -0.31
RTN3-209ENST00000538995 RAD9AQ99638 391 aa13.09□□□□□ -0.31
RTN3-209ENST00000538995 ZBED2Q9BTP6 218 aa13.09□□□□□ -0.31
RTN3-209ENST00000538995 PHF20Q9BVI0 1012 aa13.09□□□□□ -0.31
RTN3-209ENST00000538995 IFIH1Q9BYX4 1025 aaKnown RBP13.09□□□□□ -0.31
RTN3-209ENST00000538995 MAFBQ9Y5Q3 323 aaPredicted RBP13.09□□□□□ -0.31
RTN3-209ENST00000538995 SQORQ9Y6N5 450 aa13.09□□□□□ -0.31
RTN3-209ENST00000538995 EYSQ5T1H1 3165 aa13.09□□□□□ -0.31
RTN3-209ENST00000538995 IGSF9BQ9UPX0 1349 aa13.09□□□□□ -0.31
RTN3-209ENST00000538995 SMIM35A0A1B0GVV1 85 aa13.08□□□□□ -0.32
RTN3-209ENST00000538995 CTDNEP1O95476 244 aa13.08□□□□□ -0.32
RTN3-209ENST00000538995 SFNP31947 248 aa13.08□□□□□ -0.32
RTN3-209ENST00000538995 NEK4P51957 841 aa13.08□□□□□ -0.32
RTN3-209ENST00000538995 JAK3P52333 1124 aa13.08□□□□□ -0.32
RTN3-209ENST00000538995 TAP1Q03518 808 aa13.08□□□□□ -0.32
RTN3-209ENST00000538995 ME3Q16798 604 aa13.08□□□□□ -0.32
RTN3-209ENST00000538995 ZNF484Q5JVG2 852 aa13.08□□□□□ -0.32
RTN3-209ENST00000538995 IER5Q5VY09 327 aa13.08□□□□□ -0.32
RTN3-209ENST00000538995 SWSAP1Q6NVH7 229 aa13.08□□□□□ -0.32
RTN3-209ENST00000538995 NME8Q8N427 588 aa13.08□□□□□ -0.32
RTN3-209ENST00000538995 USP38Q8NB14 1042 aa13.08□□□□□ -0.32
RTN3-209ENST00000538995 RDM1Q8NG50 284 aa13.08□□□□□ -0.32
RTN3-209ENST00000538995 DNAJB3Q8WWF6 145 aa13.08□□□□□ -0.32
RTN3-209ENST00000538995 BBXQ8WY36 941 aaPredicted RBP13.08□□□□□ -0.32
RTN3-209ENST00000538995 FAM167AQ96KS9 214 aa13.08□□□□□ -0.32
RTN3-209ENST00000538995 ORC3Q9UBD5 711 aaPredicted RBP13.08□□□□□ -0.32
RTN3-209ENST00000538995 UNC80Q8N2C7 3258 aa13.08□□□□□ -0.32
RTN3-209ENST00000538995 M0QZ92 97 aa13.07□□□□□ -0.32
RTN3-209ENST00000538995 GAS7O60861 476 aa13.07□□□□□ -0.32
RTN3-209ENST00000538995 SEC24BO95487 1268 aa13.07□□□□□ -0.32
RTN3-209ENST00000538995 GHRP10912 638 aa13.07□□□□□ -0.32
RTN3-209ENST00000538995 GCFC2P16383 781 aaKnown RBP13.07□□□□□ -0.32
RTN3-209ENST00000538995 ADGRE1Q14246 886 aa13.07□□□□□ -0.32
RTN3-209ENST00000538995 LPIN1Q14693 890 aa13.07□□□□□ -0.32
RTN3-209ENST00000538995 FBXO47Q5MNV8 452 aa13.07□□□□□ -0.32
RTN3-209ENST00000538995 LRCH2Q5VUJ6 765 aa13.07□□□□□ -0.32
RTN3-209ENST00000538995 MTHFD1LQ6UB35 978 aa13.07□□□□□ -0.32
RTN3-209ENST00000538995 TSHZ1Q6ZSZ6 1077 aa13.07□□□□□ -0.32
RTN3-209ENST00000538995 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.07□□□□□ -0.32
RTN3-209ENST00000538995 MYOCDQ8IZQ8 938 aa13.07□□□□□ -0.32
RTN3-209ENST00000538995 NAP1L4Q99733 375 aaKnown RBP13.07□□□□□ -0.32
RTN3-209ENST00000538995 TEKT3Q9BXF9 490 aa13.07□□□□□ -0.32
RTN3-209ENST00000538995 FAM49AQ9H0Q0 323 aaPredicted RBP13.07□□□□□ -0.32
RTN3-209ENST00000538995 KCNJ14Q9UNX9 436 aa13.07□□□□□ -0.32
RTN3-209ENST00000538995 CEP131Q9UPN4 1083 aa13.07□□□□□ -0.32
RTN3-209ENST00000538995 SAMM50Q9Y512 469 aa13.07□□□□□ -0.32
RTN3-209ENST00000538995 INSL6Q9Y581 213 aa13.07□□□□□ -0.32
RTN3-209ENST00000538995 TRPV2Q9Y5S1 764 aa13.07□□□□□ -0.32
RTN3-209ENST00000538995 CDY2AQ9Y6F7 541 aa13.07□□□□□ -0.32
RTN3-209ENST00000538995 COL4A6Q14031 1691 aa13.07□□□□□ -0.32
RTN3-209ENST00000538995 GBF1Q92538 1859 aa13.07□□□□□ -0.32
RTN3-209ENST00000538995 TRANK1O15050 2925 aa13.07□□□□□ -0.32
RTN3-209ENST00000538995 CUL9Q8IWT3 2517 aa13.07□□□□□ -0.32
RTN3-209ENST00000538995 KDM3AQ9Y4C1 1321 aa13.07□□□□□ -0.32
RTN3-209ENST00000538995 CCDC194A0A1B0GVG4 234 aa13.06□□□□□ -0.32
RTN3-209ENST00000538995 ZBTB42B2RXF5 422 aa13.06□□□□□ -0.32
RTN3-209ENST00000538995 PSMD10O75832 226 aa13.06□□□□□ -0.32
RTN3-209ENST00000538995 TDP2O95551 362 aa13.06□□□□□ -0.32
RTN3-209ENST00000538995 POU3F3P20264 500 aaPredicted RBP13.06□□□□□ -0.32
RTN3-209ENST00000538995 HTRA4P83105 476 aaPredicted RBP13.06□□□□□ -0.32
RTN3-209ENST00000538995 C8orf34Q49A92 452 aa13.06□□□□□ -0.32
RTN3-209ENST00000538995 PPP4R3AQ6IN85 833 aa13.06□□□□□ -0.32
RTN3-209ENST00000538995 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.06□□□□□ -0.321e-6■■■■■ 27.3
RTN3-209ENST00000538995 NEK8Q86SG6 692 aa13.06□□□□□ -0.32
RTN3-209ENST00000538995 CKAP2LQ8IYA6 745 aa13.06□□□□□ -0.32
RTN3-209ENST00000538995 NSUN7Q8NE18 718 aaKnown RBP13.06□□□□□ -0.32
RTN3-209ENST00000538995 ETNPPLQ8TBG4 499 aa13.06□□□□□ -0.32
RTN3-209ENST00000538995 TRAPPC12Q8WVT3 735 aa13.06□□□□□ -0.32
RTN3-209ENST00000538995 TOP1MTQ969P6 601 aa13.06□□□□□ -0.32
RTN3-209ENST00000538995 OSBPL7Q9BZF2 842 aa13.06□□□□□ -0.32
RTN3-209ENST00000538995 BRMS1Q9HCU9 246 aa13.06□□□□□ -0.32
RTN3-209ENST00000538995 DISC1Q9NRI5 854 aa13.06□□□□□ -0.32
RTN3-209ENST00000538995 DDX25Q9UHL0 483 aaKnown RBP13.06□□□□□ -0.32
RTN3-209ENST00000538995 PRUNE2Q8WUY3 3088 aa13.06□□□□□ -0.32
RTN3-209ENST00000538995 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.05□□□□□ -0.32
RTN3-209ENST00000538995 LCHNA4D1U4 455 aa13.05□□□□□ -0.32
RTN3-209ENST00000538995 ARHGEF15O94989 841 aa13.05□□□□□ -0.32
RTN3-209ENST00000538995 LARGE1O95461 756 aa13.05□□□□□ -0.32
RTN3-209ENST00000538995 C22orf31O95567 290 aa13.05□□□□□ -0.32
RTN3-209ENST00000538995 FDPSP14324 419 aaKnown RBP13.05□□□□□ -0.32
RTN3-209ENST00000538995 ATP4AP20648 1035 aa13.05□□□□□ -0.32
RTN3-209ENST00000538995 KLRC1P26715 233 aa13.05□□□□□ -0.32
RTN3-209ENST00000538995 INF2Q27J81 1249 aa13.05□□□□□ -0.32
RTN3-209ENST00000538995 B3GNT9Q6UX72 402 aa13.05□□□□□ -0.32
RTN3-209ENST00000538995 TMCO2Q7Z6W1 182 aaPredicted RBP13.05□□□□□ -0.32
RTN3-209ENST00000538995 ZNF710Q8N1W2 664 aa13.05□□□□□ -0.32
RTN3-209ENST00000538995 NECAB1Q8N987 351 aa13.05□□□□□ -0.32
RTN3-209ENST00000538995 SP7Q8TDD2 431 aaPredicted RBP13.05□□□□□ -0.32
RTN3-209ENST00000538995 UIMC1Q96RL1 719 aa13.05□□□□□ -0.32
RTN3-209ENST00000538995 TGS1Q96RS0 853 aaKnown RBP13.05□□□□□ -0.32
RTN3-209ENST00000538995 FTHL17Q9BXU8 183 aa13.05□□□□□ -0.32
RTN3-209ENST00000538995 CELF4Q9BZC1 486 aaKnown RBP13.05□□□□□ -0.32
RTN3-209ENST00000538995 UNC45AQ9H3U1 944 aa13.05□□□□□ -0.32
RTN3-209ENST00000538995 GABBR1Q9UBS5 961 aa13.05□□□□□ -0.32
RTN3-209ENST00000538995 MICAL3Q7RTP6 2002 aa13.05□□□□□ -0.32
RTN3-209ENST00000538995 KAT6AQ92794 2004 aa13.05□□□□□ -0.32
RTN3-209ENST00000538995 PTPRSQ13332 1948 aa13.04□□□□□ -0.32
RTN3-209ENST00000538995 LINC01553A4QN01 128 aa13.04□□□□□ -0.32
RTN3-209ENST00000538995 TBX3O15119 743 aa13.04□□□□□ -0.32
RTN3-209ENST00000538995 MAGEB2O15479 319 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms