RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 ITIH3Q06033 890 aa7.29□□□□□ -1.24
USP28-206ENST00000538224 ASIC2Q16515 512 aa7.29□□□□□ -1.24
USP28-206ENST00000538224 IFI16Q16666 785 aaKnown RBP7.29□□□□□ -1.24
USP28-206ENST00000538224 MAP9Q49MG5 647 aa7.29□□□□□ -1.24
USP28-206ENST00000538224 TDRD12Q587J7 1177 aaKnown RBP7.29□□□□□ -1.24
USP28-206ENST00000538224 PCNX4Q63HM2 1172 aa7.29□□□□□ -1.24
USP28-206ENST00000538224 RINT1Q6NUQ1 792 aa7.29□□□□□ -1.24
USP28-206ENST00000538224 POTEAQ6S8J7 498 aa7.29□□□□□ -1.24
USP28-206ENST00000538224 VPS36Q86VN1 386 aa7.29□□□□□ -1.24
USP28-206ENST00000538224 CCDC125Q86Z20 511 aa7.29□□□□□ -1.24
USP28-206ENST00000538224 APOBEC3FQ8IUX4 373 aaKnown RBP7.29□□□□□ -1.24
USP28-206ENST00000538224 MSL3Q8N5Y2 521 aaKnown RBP7.29□□□□□ -1.24
USP28-206ENST00000538224 LRRN4CLQ8ND94 238 aa7.29□□□□□ -1.24
USP28-206ENST00000538224 RDM1Q8NG50 284 aa7.29□□□□□ -1.24
USP28-206ENST00000538224 BAP1Q92560 729 aa7.29□□□□□ -1.24
USP28-206ENST00000538224 GJA10Q969M2 543 aa7.29□□□□□ -1.24
USP28-206ENST00000538224 VTI1AQ96AJ9 217 aa7.29□□□□□ -1.24
USP28-206ENST00000538224 DYDC2Q96IM9 177 aa7.29□□□□□ -1.24
USP28-206ENST00000538224 IWS1Q96ST2 819 aa7.29□□□□□ -1.24
USP28-206ENST00000538224 IRX2Q9BZI1 471 aaPredicted RBP7.29□□□□□ -1.24
USP28-206ENST00000538224 ACBD3Q9H3P7 528 aa7.29□□□□□ -1.24
USP28-206ENST00000538224 TBC1D22BQ9NU19 505 aa7.29□□□□□ -1.24
USP28-206ENST00000538224 FAM53CQ9NYF3 392 aa7.29□□□□□ -1.24
USP28-206ENST00000538224 AIPL1Q9NZN9 384 aa7.29□□□□□ -1.24
USP28-206ENST00000538224 TBC1D7Q9P0N9 293 aa7.29□□□□□ -1.24
USP28-206ENST00000538224 ARHGAP20Q9P2F6 1191 aa7.29□□□□□ -1.24
USP28-206ENST00000538224 PGAP2Q9UHJ9 254 aa7.29□□□□□ -1.24
USP28-206ENST00000538224 ZBTB12Q9Y330 459 aaPredicted RBP7.29□□□□□ -1.24
USP28-206ENST00000538224 PCDHB13Q9Y5F0 798 aa7.29□□□□□ -1.24
USP28-206ENST00000538224 PCDHA13Q9Y5I0 950 aa7.29□□□□□ -1.24
USP28-206ENST00000538224 ASTN1O14525 1302 aa7.28□□□□□ -1.24
USP28-206ENST00000538224 A0A0G2JMZ2 1700 aa7.28□□□□□ -1.24
USP28-206ENST00000538224 NPHP3-ACAD11A0A0J9YXS1 232 aa7.28□□□□□ -1.24
USP28-206ENST00000538224 A0A0U1RQG5 324 aaPredicted RBP7.28□□□□□ -1.24
USP28-206ENST00000538224 TARSL2A2RTX5 802 aaKnown RBP7.28□□□□□ -1.24
USP28-206ENST00000538224 BTNL10A8MVZ5 291 aa7.28□□□□□ -1.24
USP28-206ENST00000538224 PHF20L1A8MW92 1017 aa7.28□□□□□ -1.24
USP28-206ENST00000538224 GFPT2O94808 682 aa7.28□□□□□ -1.24
USP28-206ENST00000538224 ZRANB2O95218 330 aaKnown RBP eCLIP7.28□□□□□ -1.24
USP28-206ENST00000538224 LYPLA2O95372 231 aa7.28□□□□□ -1.24
USP28-206ENST00000538224 NR3C1P04150 777 aa7.28□□□□□ -1.24
USP28-206ENST00000538224 P4HBP07237 508 aaKnown RBP7.28□□□□□ -1.24
USP28-206ENST00000538224 CCDC172P0C7W6 258 aa7.28□□□□□ -1.24
USP28-206ENST00000538224 TCP1P17987 556 aaKnown RBP7.28□□□□□ -1.24
USP28-206ENST00000538224 SFNP31947 248 aa7.28□□□□□ -1.24
USP28-206ENST00000538224 ABCD1P33897 745 aa7.28□□□□□ -1.24
USP28-206ENST00000538224 EIF4A3P38919 411 aaKnown RBP7.28□□□□□ -1.24
USP28-206ENST00000538224 MAGEA1P43355 309 aa7.28□□□□□ -1.24
USP28-206ENST00000538224 JAK3P52333 1124 aa7.28□□□□□ -1.24
USP28-206ENST00000538224 OAZ1P54368 228 aa7.28□□□□□ -1.24
USP28-206ENST00000538224 PSMC6P62333 389 aa7.28□□□□□ -1.24
USP28-206ENST00000538224 KCNMA1Q12791 1236 aa7.28□□□□□ -1.24
USP28-206ENST00000538224 KCNH2Q12809 1159 aa7.28□□□□□ -1.24
USP28-206ENST00000538224 RASA3Q14644 834 aa7.28□□□□□ -1.24
USP28-206ENST00000538224 PPP2R5AQ15172 486 aa7.28□□□□□ -1.24
USP28-206ENST00000538224 ZYXQ15942 572 aaKnown RBP7.28□□□□□ -1.24
USP28-206ENST00000538224 EXOC3L4Q17RC7 722 aa7.28□□□□□ -1.24
USP28-206ENST00000538224 KIAA1755Q5JYT7 1200 aa7.28□□□□□ -1.24
USP28-206ENST00000538224 CC2D1AQ6P1N0 951 aaPredicted RBP7.28□□□□□ -1.24
USP28-206ENST00000538224 WDR93Q6P2C0 686 aa7.28□□□□□ -1.24
USP28-206ENST00000538224 B3GNT9Q6UX72 402 aa7.28□□□□□ -1.24
USP28-206ENST00000538224 GBP6Q6ZN66 633 aa7.28□□□□□ -1.24
USP28-206ENST00000538224 C1orf186Q6ZWK4 172 aa7.28□□□□□ -1.24
USP28-206ENST00000538224 MIER3Q7Z3K6 550 aa7.28□□□□□ -1.24
USP28-206ENST00000538224 TPH2Q8IWU9 490 aa7.28□□□□□ -1.24
USP28-206ENST00000538224 FAM178BQ8IXR5 827 aa7.28□□□□□ -1.24
USP28-206ENST00000538224 MYCT1Q8N699 235 aa7.28□□□□□ -1.24
USP28-206ENST00000538224 GLIS3Q8NEA6 775 aa7.28□□□□□ -1.24
USP28-206ENST00000538224 CAGE1Q8TC20 777 aa7.28□□□□□ -1.24
USP28-206ENST00000538224 EEF2KMTQ96G04 330 aa7.28□□□□□ -1.24
USP28-206ENST00000538224 CCDC43Q96MW1 224 aaKnown RBP7.28□□□□□ -1.24
USP28-206ENST00000538224 NOX5Q96PH1 765 aa7.28□□□□□ -1.24
USP28-206ENST00000538224 RUSC1Q9BVN2 902 aa7.28□□□□□ -1.24
USP28-206ENST00000538224 MTFR1LQ9H019 292 aa7.28□□□□□ -1.24
USP28-206ENST00000538224 UNC45AQ9H3U1 944 aa7.28□□□□□ -1.24
USP28-206ENST00000538224 ZSWIM4Q9H7M6 989 aa7.28□□□□□ -1.24
USP28-206ENST00000538224 SLC38A10Q9HBR0 1119 aa7.28□□□□□ -1.24
USP28-206ENST00000538224 LARSQ9P2J5 1176 aaKnown RBP7.28□□□□□ -1.24
USP28-206ENST00000538224 RNF14Q9UBS8 474 aa7.28□□□□□ -1.24
USP28-206ENST00000538224 PUF60Q9UHX1 559 aaKnown RBP7.28□□□□□ -1.24
USP28-206ENST00000538224 DBR1Q9UK59 544 aaKnown RBP7.28□□□□□ -1.24
USP28-206ENST00000538224 RAB21Q9UL25 225 aa7.28□□□□□ -1.24
USP28-206ENST00000538224 FRMD4BQ9Y2L6 1034 aa7.28□□□□□ -1.24
USP28-206ENST00000538224 HYOU1Q9Y4L1 999 aa7.28□□□□□ -1.24
USP28-206ENST00000538224 PPP2R3BQ9Y5P8 575 aa7.28□□□□□ -1.24
USP28-206ENST00000538224 RLFQ13129 1914 aa7.28□□□□□ -1.24
USP28-206ENST00000538224 KIAA1217Q5T5P2 1943 aa7.28□□□□□ -1.24
USP28-206ENST00000538224 EML1O00423 815 aa7.27□□□□□ -1.25
USP28-206ENST00000538224 CHMP2AO43633 222 aa7.27□□□□□ -1.25
USP28-206ENST00000538224 N4BP1O75113 896 aaKnown RBP7.27□□□□□ -1.25
USP28-206ENST00000538224 FLOT1O75955 427 aa7.27□□□□□ -1.25
USP28-206ENST00000538224 SLITRK3O94933 977 aa7.27□□□□□ -1.25
USP28-206ENST00000538224 PNMA6AP0CW24 399 aaPredicted RBP7.27□□□□□ -1.25
USP28-206ENST00000538224 MYBP10242 640 aa7.27□□□□□ -1.25
USP28-206ENST00000538224 FERP16591 822 aa7.27□□□□□ -1.25
USP28-206ENST00000538224 PRKCIP41743 596 aa7.27□□□□□ -1.25
USP28-206ENST00000538224 POLR2FP61218 127 aaKnown RBP7.27□□□□□ -1.25
USP28-206ENST00000538224 CBX1P83916 185 aa7.27□□□□□ -1.25
USP28-206ENST00000538224 KRT76Q01546 638 aa7.27□□□□□ -1.25
USP28-206ENST00000538224 RAD51AP2Q09MP3 1159 aa7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms