RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 FAM26DQ5JW98 314 aa7.59□□□□□ -1.19
CD44-237ENST00000534082 TTBK2Q6IQ55 1244 aa7.59□□□□□ -1.19
CD44-237ENST00000534082 GIMAP6Q6P9H5 292 aa7.59□□□□□ -1.19
CD44-237ENST00000534082 ZDHHC14Q8IZN3 488 aa7.59□□□□□ -1.19
CD44-237ENST00000534082 SIX5Q8N196 739 aa7.59□□□□□ -1.19
CD44-237ENST00000534082 CRIPAKQ8N1N5 446 aa7.59□□□□□ -1.19
CD44-237ENST00000534082 SUMF1Q8NBK3 374 aa7.59□□□□□ -1.19
CD44-237ENST00000534082 STRBPQ96SI9 672 aaKnown RBP7.59□□□□□ -1.19
CD44-237ENST00000534082 RTKNQ9BST9 563 aa7.59□□□□□ -1.19
CD44-237ENST00000534082 EPB41L4AQ9HCS5 686 aaPredicted RBP7.59□□□□□ -1.19
CD44-237ENST00000534082 NCDNQ9UBB6 729 aa7.59□□□□□ -1.19
CD44-237ENST00000534082 DAXXQ9UER7 740 aaPredicted RBP7.59□□□□□ -1.19
CD44-237ENST00000534082 LIMD1Q9UGP4 676 aa7.59□□□□□ -1.19
CD44-237ENST00000534082 DDX41Q9UJV9 622 aaKnown RBP7.59□□□□□ -1.19
CD44-237ENST00000534082 FBXL21Q9UKT6 434 aa7.59□□□□□ -1.19
CD44-237ENST00000534082 EXOC6BQ9Y2D4 811 aa7.59□□□□□ -1.19
CD44-237ENST00000534082 MRVI1Q9Y6F6 885 aa7.59□□□□□ -1.19
CD44-237ENST00000534082 ZZEF1O43149 2961 aa7.59□□□□□ -1.2
CD44-237ENST00000534082 WDR19Q8NEZ3 1342 aa7.58□□□□□ -1.2
CD44-237ENST00000534082 PRR5-ARHGAP8B1AHC4 643 aa7.58□□□□□ -1.2
CD44-237ENST00000534082 SORBS3O60504 671 aa7.58□□□□□ -1.2
CD44-237ENST00000534082 KINO60870 393 aaKnown RBP7.58□□□□□ -1.2
CD44-237ENST00000534082 PPFIA4O75335 1185 aa7.58□□□□□ -1.2
CD44-237ENST00000534082 NR1I2O75469 434 aa7.58□□□□□ -1.2
CD44-237ENST00000534082 RARSP54136 660 aaKnown RBP7.58□□□□□ -1.2
CD44-237ENST00000534082 ERVFC1P60507 584 aa7.58□□□□□ -1.2
CD44-237ENST00000534082 ARHGAP8P85298 464 aa7.58□□□□□ -1.2
CD44-237ENST00000534082 TFAP4Q01664 338 aa7.58□□□□□ -1.2
CD44-237ENST00000534082 LPIN1Q14693 890 aa7.58□□□□□ -1.2
CD44-237ENST00000534082 STXBP2Q15833 593 aa7.58□□□□□ -1.2
CD44-237ENST00000534082 HSDL1Q3SXM5 330 aa7.58□□□□□ -1.2
CD44-237ENST00000534082 TPRNQ4KMQ1 711 aa7.58□□□□□ -1.2
CD44-237ENST00000534082 PLPP4Q5VZY2 271 aa7.58□□□□□ -1.2
CD44-237ENST00000534082 CES5AQ6NT32 575 aa7.58□□□□□ -1.2
CD44-237ENST00000534082 BTNL9Q6UXG8 535 aa7.58□□□□□ -1.2
CD44-237ENST00000534082 NPAS4Q8IUM7 802 aa7.58□□□□□ -1.2
CD44-237ENST00000534082 RASGRP4Q8TDF6 673 aa7.58□□□□□ -1.2
CD44-237ENST00000534082 DCAF4Q8WV16 495 aa7.58□□□□□ -1.2
CD44-237ENST00000534082 LINC01599Q8WXQ3 324 aa7.58□□□□□ -1.2
CD44-237ENST00000534082 CLUAP1Q96AJ1 413 aa7.58□□□□□ -1.2
CD44-237ENST00000534082 SPATA33Q96N06 139 aa7.58□□□□□ -1.2
CD44-237ENST00000534082 C16orf70Q9BSU1 422 aa7.58□□□□□ -1.2
CD44-237ENST00000534082 PNMA2Q9UL42 364 aa7.58□□□□□ -1.2
CD44-237ENST00000534082 MYH7P12883 1935 aa7.58□□□□□ -1.2
CD44-237ENST00000534082 TTC3P53804 2025 aa7.57□□□□□ -1.2
CD44-237ENST00000534082 FRMPD2Q68DX3 1309 aaPredicted RBP7.57□□□□□ -1.2
CD44-237ENST00000534082 KIAA1217Q5T5P2 1943 aa7.57□□□□□ -1.2
CD44-237ENST00000534082 MYO10Q9HD67 2058 aa7.57□□□□□ -1.2
CD44-237ENST00000534082 H3BRB1 525 aa7.57□□□□□ -1.2
CD44-237ENST00000534082 FSCN2O14926 492 aa7.57□□□□□ -1.2
CD44-237ENST00000534082 FGF18O76093 207 aa7.57□□□□□ -1.2
CD44-237ENST00000534082 S1PR4O95977 384 aa7.57□□□□□ -1.2
CD44-237ENST00000534082 CHRNA1P02708 482 aa7.57□□□□□ -1.2
CD44-237ENST00000534082 WEE2P0C1S8 567 aa7.57□□□□□ -1.2
CD44-237ENST00000534082 SP9P0CG40 484 aa7.57□□□□□ -1.2
CD44-237ENST00000534082 RFX1P22670 979 aa7.57□□□□□ -1.2
CD44-237ENST00000534082 MTHFRP42898 656 aa7.57□□□□□ -1.2
CD44-237ENST00000534082 GATMP50440 423 aa7.57□□□□□ -1.2
CD44-237ENST00000534082 ITIH3Q06033 890 aa7.57□□□□□ -1.2
CD44-237ENST00000534082 APOBRQ0VD83 1088 aa7.57□□□□□ -1.2
CD44-237ENST00000534082 TDGQ13569 410 aa7.57□□□□□ -1.2
CD44-237ENST00000534082 COL9A3Q14050 684 aaPredicted RBP7.57□□□□□ -1.2
CD44-237ENST00000534082 PPM1JQ5JR12 505 aa7.57□□□□□ -1.2
CD44-237ENST00000534082 PDE12Q6L8Q7 609 aaKnown RBP7.57□□□□□ -1.2
CD44-237ENST00000534082 ZSCAN25Q6NSZ9 544 aa7.57□□□□□ -1.2
CD44-237ENST00000534082 TMEM57Q8N5G2 664 aa7.57□□□□□ -1.2
CD44-237ENST00000534082 GPR161Q8N6U8 529 aaKnown RBP7.57□□□□□ -1.2
CD44-237ENST00000534082 NSUN6Q8TEA1 469 aaKnown RBP7.57□□□□□ -1.2
CD44-237ENST00000534082 CASP10Q92851 521 aa7.57□□□□□ -1.2
CD44-237ENST00000534082 ADAM7Q9H2U9 754 aa7.57□□□□□ -1.2
CD44-237ENST00000534082 BOLA2Q9H3K6 86 aa7.57□□□□□ -1.2
CD44-237ENST00000534082 RNPEPQ9H4A4 650 aa7.57□□□□□ -1.2
CD44-237ENST00000534082 TUT1Q9H6E5 874 aaKnown RBP7.57□□□□□ -1.2
CD44-237ENST00000534082 EHMT1Q9H9B1 1298 aa7.57□□□□□ -1.2
CD44-237ENST00000534082 SETD4Q9NVD3 440 aa7.57□□□□□ -1.2
CD44-237ENST00000534082 COL20A1Q9P218 1284 aa7.57□□□□□ -1.2
CD44-237ENST00000534082 DUSP12Q9UNI6 340 aa7.57□□□□□ -1.2
CD44-237ENST00000534082 PCDHB12Q9Y5F1 795 aa7.57□□□□□ -1.2
CD44-237ENST00000534082 V9GY48 417 aaPredicted RBP7.57□□□□□ -1.2
CD44-237ENST00000534082 CCDC171Q6TFL3 1326 aa7.56□□□□□ -1.2
CD44-237ENST00000534082 FANCMQ8IYD8 2048 aa7.56□□□□□ -1.2
CD44-237ENST00000534082 HIDE1A8MVS5 230 aa7.56□□□□□ -1.2
CD44-237ENST00000534082 RNF223E7ERA6 249 aa7.56□□□□□ -1.2
CD44-237ENST00000534082 IPO8O15397 1037 aaKnown RBP7.56□□□□□ -1.2
CD44-237ENST00000534082 NMT2O60551 498 aa7.56□□□□□ -1.2
CD44-237ENST00000534082 EIF3JO75822 258 aaKnown RBP7.56□□□□□ -1.2
CD44-237ENST00000534082 GGPS1O95749 300 aa7.56□□□□□ -1.2
CD44-237ENST00000534082 LGALS2P05162 132 aa7.56□□□□□ -1.2
CD44-237ENST00000534082 IFIT2P09913 472 aaKnown RBP7.56□□□□□ -1.2
CD44-237ENST00000534082 GNAT1P11488 350 aa7.56□□□□□ -1.2
CD44-237ENST00000534082 EIF2AK2P19525 551 aaKnown RBP7.56□□□□□ -1.2
CD44-237ENST00000534082 ARHGAP4P98171 946 aa7.56□□□□□ -1.2
CD44-237ENST00000534082 MGAT3Q09327 533 aa7.56□□□□□ -1.2
CD44-237ENST00000534082 TBC1D8BQ0IIM8 1120 aa7.56□□□□□ -1.2
CD44-237ENST00000534082 USH1GQ495M9 461 aa7.56□□□□□ -1.2
CD44-237ENST00000534082 SPECC1Q5M775 1068 aa7.56□□□□□ -1.2
CD44-237ENST00000534082 CELF3Q5SZQ8 465 aaKnown RBP7.56□□□□□ -1.2
CD44-237ENST00000534082 SPOUT1Q5T280 376 aaKnown RBP7.56□□□□□ -1.2
CD44-237ENST00000534082 MYSM1Q5VVJ2 828 aa7.56□□□□□ -1.2
CD44-237ENST00000534082 THNSL1Q8IYQ7 743 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms