RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 POP1Q99575 1024 aaKnown RBP9.34□□□□□ -0.91
NEDD8-207ENST00000533242 PDCD2LQ9BRP1 358 aa9.34□□□□□ -0.91
NEDD8-207ENST00000533242 ZKSCAN3Q9BRR0 538 aa9.34□□□□□ -0.91
NEDD8-207ENST00000533242 JMJD4Q9H9V9 463 aa9.34□□□□□ -0.91
NEDD8-207ENST00000533242 CBX8Q9HC52 389 aa9.34□□□□□ -0.91
NEDD8-207ENST00000533242 CLDND1Q9NY35 253 aa9.34□□□□□ -0.91
NEDD8-207ENST00000533242 KAT6AQ92794 2004 aa9.34□□□□□ -0.91
NEDD8-207ENST00000533242 LOC101059915A0A1B0GWI6 518 aaPredicted RBP9.33□□□□□ -0.92
NEDD8-207ENST00000533242 GOLGA6L4A6NEF3 574 aa9.33□□□□□ -0.92
NEDD8-207ENST00000533242 C5orf67F2Z3F1 127 aa9.33□□□□□ -0.92
NEDD8-207ENST00000533242 RGS20O76081 388 aa9.33□□□□□ -0.92
NEDD8-207ENST00000533242 CFBP00751 764 aa9.33□□□□□ -0.92
NEDD8-207ENST00000533242 PARP1P09874 1014 aaKnown RBP9.33□□□□□ -0.92
NEDD8-207ENST00000533242 SMIM10L2AP0DMW4 78 aa9.33□□□□□ -0.92
NEDD8-207ENST00000533242 SMIM10L2BP0DMW5 78 aa9.33□□□□□ -0.92
NEDD8-207ENST00000533242 TGFB3P10600 412 aa9.33□□□□□ -0.92
NEDD8-207ENST00000533242 MYCLP12524 364 aaPredicted RBP9.33□□□□□ -0.92
NEDD8-207ENST00000533242 IRS1P35568 1242 aa9.33□□□□□ -0.92
NEDD8-207ENST00000533242 SMAD2Q15796 467 aaKnown RBP9.33□□□□□ -0.92
NEDD8-207ENST00000533242 CTC1Q2NKJ3 1217 aa9.33□□□□□ -0.92
NEDD8-207ENST00000533242 HSDL1Q3SXM5 330 aa9.33□□□□□ -0.92
NEDD8-207ENST00000533242 FAM26DQ5JW98 314 aa9.33□□□□□ -0.92
NEDD8-207ENST00000533242 VSIG10LQ86VR7 867 aa9.33□□□□□ -0.92
NEDD8-207ENST00000533242 IQCA1Q86XH1 822 aa9.33□□□□□ -0.92
NEDD8-207ENST00000533242 FAM200AQ8TCP9 573 aa9.33□□□□□ -0.92
NEDD8-207ENST00000533242 AMNQ9BXJ7 453 aa9.33□□□□□ -0.92
NEDD8-207ENST00000533242 DNAJC25Q9H1X3 360 aa9.33□□□□□ -0.92
NEDD8-207ENST00000533242 ZSCAN16Q9H4T2 348 aaPredicted RBP9.33□□□□□ -0.92
NEDD8-207ENST00000533242 RWDD3Q9Y3V2 267 aa9.33□□□□□ -0.92
NEDD8-207ENST00000533242 KMT2EQ8IZD2 1858 aa9.33□□□□□ -0.92
NEDD8-207ENST00000533242 KLF18A0A0U1RQI7 1052 aa9.33□□□□□ -0.92
NEDD8-207ENST00000533242 OPLAHO14841 1288 aa9.33□□□□□ -0.92
NEDD8-207ENST00000533242 MBTPS2O43462 519 aa9.33□□□□□ -0.92
NEDD8-207ENST00000533242 DHX16O60231 1041 aaKnown RBP9.33□□□□□ -0.92
NEDD8-207ENST00000533242 UPP2O95045 317 aa9.33□□□□□ -0.92
NEDD8-207ENST00000533242 RXRAP19793 462 aa9.33□□□□□ -0.92
NEDD8-207ENST00000533242 UBA1P22314 1058 aaKnown RBP9.33□□□□□ -0.92
NEDD8-207ENST00000533242 LTBRP36941 435 aa9.33□□□□□ -0.92
NEDD8-207ENST00000533242 SNW1Q13573 536 aaKnown RBP9.33□□□□□ -0.92
NEDD8-207ENST00000533242 PGM5Q15124 567 aa9.33□□□□□ -0.92
NEDD8-207ENST00000533242 HERC4Q5GLZ8 1057 aaPredicted RBP9.33□□□□□ -0.92
NEDD8-207ENST00000533242 HFE2Q6ZVN8 426 aa9.33□□□□□ -0.92
NEDD8-207ENST00000533242 CYB5R4Q7L1T6 521 aa9.33□□□□□ -0.92
NEDD8-207ENST00000533242 FIBCD1Q8N539 461 aa9.33□□□□□ -0.92
NEDD8-207ENST00000533242 AIFM3Q96NN9 605 aa9.33□□□□□ -0.92
NEDD8-207ENST00000533242 RCOR1Q9UKL0 485 aa9.33□□□□□ -0.92
NEDD8-207ENST00000533242 PYCARDQ9ULZ3 195 aa9.33□□□□□ -0.92
NEDD8-207ENST00000533242 ZNF318Q5VUA4 2279 aa9.33□□□□□ -0.92
NEDD8-207ENST00000533242 H3BRB1 525 aa9.32□□□□□ -0.92
NEDD8-207ENST00000533242 TREHO43280 583 aa9.32□□□□□ -0.92
NEDD8-207ENST00000533242 LGALS2P05162 132 aa9.32□□□□□ -0.92
NEDD8-207ENST00000533242 GNAT1P11488 350 aa9.32□□□□□ -0.92
NEDD8-207ENST00000533242 CCND2P30279 289 aa9.32□□□□□ -0.92
NEDD8-207ENST00000533242 CTNNB1P35222 781 aa9.32□□□□□ -0.92
NEDD8-207ENST00000533242 HMGN5P82970 282 aaKnown RBP9.32□□□□□ -0.92
NEDD8-207ENST00000533242 SMAD4Q13485 552 aaKnown RBP9.32□□□□□ -0.92
NEDD8-207ENST00000533242 IMMTQ16891 758 aaKnown RBP9.32□□□□□ -0.92
NEDD8-207ENST00000533242 FBXL16Q8N461 479 aa9.32□□□□□ -0.92
NEDD8-207ENST00000533242 C11orf84Q9BUA3 381 aaPredicted RBP9.32□□□□□ -0.92
NEDD8-207ENST00000533242 IFIH1Q9BYX4 1025 aaKnown RBP9.32□□□□□ -0.92
NEDD8-207ENST00000533242 TUT1Q9H6E5 874 aaKnown RBP9.32□□□□□ -0.92
NEDD8-207ENST00000533242 MLXIPQ9HAP2 919 aa9.32□□□□□ -0.92
NEDD8-207ENST00000533242 VAT1LQ9HCJ6 419 aa9.32□□□□□ -0.92
NEDD8-207ENST00000533242 DDX19AQ9NUU7 478 aaKnown RBP9.32□□□□□ -0.92
NEDD8-207ENST00000533242 GOLGA8BA8MQT2 603 aa9.32□□□□□ -0.92
NEDD8-207ENST00000533242 RBAK-RBAKDNI3L0D1 243 aa9.32□□□□□ -0.92
NEDD8-207ENST00000533242 ZNF213O14771 459 aa9.32□□□□□ -0.92
NEDD8-207ENST00000533242 SORBS3O60504 671 aa9.32□□□□□ -0.92
NEDD8-207ENST00000533242 BMPR1AP36894 532 aa9.32□□□□□ -0.92
NEDD8-207ENST00000533242 SP2Q02086 613 aa9.32□□□□□ -0.92
NEDD8-207ENST00000533242 HYAL1Q12794 435 aa9.32□□□□□ -0.92
NEDD8-207ENST00000533242 C11orf57Q6ZUT1 292 aaPredicted RBP9.32□□□□□ -0.92
NEDD8-207ENST00000533242 BMP8AQ7Z5Y6 402 aa9.32□□□□□ -0.92
NEDD8-207ENST00000533242 MTMR8Q96EF0 704 aa9.32□□□□□ -0.92
NEDD8-207ENST00000533242 ZSCAN10Q96SZ4 725 aaPredicted RBP9.32□□□□□ -0.92
NEDD8-207ENST00000533242 OSBPL7Q9BZF2 842 aa9.32□□□□□ -0.92
NEDD8-207ENST00000533242 CTSHP09668 335 aa9.31□□□□□ -0.92
NEDD8-207ENST00000533242 TRAF1Q13077 416 aa9.31□□□□□ -0.92
NEDD8-207ENST00000533242 RNF135Q8IUD6 432 aa9.31□□□□□ -0.92
NEDD8-207ENST00000533242 ENAHQ8N8S7 591 aaPredicted RBP9.31□□□□□ -0.92
NEDD8-207ENST00000533242 ENGASEQ8NFI3 743 aa9.31□□□□□ -0.92
NEDD8-207ENST00000533242 IL31RAQ8NI17 732 aa9.31□□□□□ -0.92
NEDD8-207ENST00000533242 PIBF1Q8WXW3 757 aa9.31□□□□□ -0.92
NEDD8-207ENST00000533242 RNPEPQ9H4A4 650 aa9.31□□□□□ -0.92
NEDD8-207ENST00000533242 CD207Q9UJ71 328 aa9.31□□□□□ -0.92
NEDD8-207ENST00000533242 CFAP45Q9UL16 551 aa9.31□□□□□ -0.92
NEDD8-207ENST00000533242 CLIC4Q9Y696 253 aa9.31□□□□□ -0.92
NEDD8-207ENST00000533242 PIEZO1Q92508 2521 aa9.31□□□□□ -0.92
NEDD8-207ENST00000533242 GRM6O15303 877 aa9.31□□□□□ -0.92
NEDD8-207ENST00000533242 LINC00271P0C7V0 271 aa9.31□□□□□ -0.92
NEDD8-207ENST00000533242 ICAM3P32942 547 aa9.31□□□□□ -0.92
NEDD8-207ENST00000533242 PKN1Q16512 942 aa9.31□□□□□ -0.92
NEDD8-207ENST00000533242 EDAQ92838 391 aa9.31□□□□□ -0.92
NEDD8-207ENST00000533242 PRRX2Q99811 253 aa9.31□□□□□ -0.92
NEDD8-207ENST00000533242 MUTYHQ9UIF7 546 aa9.31□□□□□ -0.92
NEDD8-207ENST00000533242 ADGRA3Q8IWK6 1321 aa9.3□□□□□ -0.92
NEDD8-207ENST00000533242 B4E1Z4 1266 aa9.3□□□□□ -0.92
NEDD8-207ENST00000533242 STXBP3O00186 592 aa9.3□□□□□ -0.92
NEDD8-207ENST00000533242 NOP56O00567 594 aaKnown RBP9.3□□□□□ -0.92
NEDD8-207ENST00000533242 PPP1R11O60927 126 aaPredicted RBP9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms