RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 H3BQV1 296 aa22.37■■□□□ 1.17
CPSF1-209ENST00000532725 NEMFO60524 1076 aa22.37■■□□□ 1.17
CPSF1-209ENST00000532725 MCM7P33993 719 aa22.37■■□□□ 1.17
CPSF1-209ENST00000532725 THPOP40225 353 aa22.37■■□□□ 1.17
CPSF1-209ENST00000532725 SPIRE1Q08AE8 756 aa22.37■■□□□ 1.17
CPSF1-209ENST00000532725 CALCRLQ16602 461 aa22.37■■□□□ 1.17
CPSF1-209ENST00000532725 UGCGQ16739 394 aa22.37■■□□□ 1.17
CPSF1-209ENST00000532725 RPAINQ86UA6 219 aa22.37■■□□□ 1.17
CPSF1-209ENST00000532725 TRAPPC12Q8WVT3 735 aa22.37■■□□□ 1.17
CPSF1-209ENST00000532725 TUBE1Q9UJT0 475 aa22.37■■□□□ 1.17
CPSF1-209ENST00000532725 PCDHA12Q9UN75 941 aa22.37■■□□□ 1.17
CPSF1-209ENST00000532725 PARNO95453 639 aaKnown RBP22.36■■□□□ 1.17
CPSF1-209ENST00000532725 FGBP02675 491 aa22.36■■□□□ 1.17
CPSF1-209ENST00000532725 ORC2Q13416 577 aaPredicted RBP22.36■■□□□ 1.17
CPSF1-209ENST00000532725 LRIT3Q3SXY7 679 aa22.36■■□□□ 1.17
CPSF1-209ENST00000532725 ZNF484Q5JVG2 852 aa22.36■■□□□ 1.17
CPSF1-209ENST00000532725 MCTP1Q6DN14 999 aa22.36■■□□□ 1.17
CPSF1-209ENST00000532725 TAF2Q6P1X5 1199 aa22.36■■□□□ 1.17
CPSF1-209ENST00000532725 CKAP2LQ8IYA6 745 aa22.36■■□□□ 1.17
CPSF1-209ENST00000532725 ZBTB10Q96DT7 871 aa22.36■■□□□ 1.17
CPSF1-209ENST00000532725 NRBP2Q9NSY0 501 aa22.36■■□□□ 1.17
CPSF1-209ENST00000532725 PCDHA2Q9Y5H9 948 aa22.36■■□□□ 1.17
CPSF1-209ENST00000532725 LAMA3Q16787 3333 aa22.36■■□□□ 1.17
CPSF1-209ENST00000532725 RSPH10B2B2RC85 870 aa22.35■■□□□ 1.17
CPSF1-209ENST00000532725 CAND2O75155 1236 aa22.35■■□□□ 1.17
CPSF1-209ENST00000532725 STBD1O95210 358 aa22.35■■□□□ 1.17
CPSF1-209ENST00000532725 RSPH10BP0C881 870 aa22.35■■□□□ 1.17
CPSF1-209ENST00000532725 KLRC1P26715 233 aa22.35■■□□□ 1.17
CPSF1-209ENST00000532725 MBTPS1Q14703 1052 aa22.35■■□□□ 1.17
CPSF1-209ENST00000532725 EPHA7Q15375 998 aa22.35■■□□□ 1.17
CPSF1-209ENST00000532725 TTC38Q5R3I4 469 aa22.35■■□□□ 1.17
CPSF1-209ENST00000532725 RASIP1Q5U651 963 aa22.35■■□□□ 1.17
CPSF1-209ENST00000532725 PSRC1Q6PGN9 363 aaPredicted RBP22.35■■□□□ 1.17
CPSF1-209ENST00000532725 MTHFD1LQ6UB35 978 aa22.35■■□□□ 1.17
CPSF1-209ENST00000532725 TRMT1LQ7Z2T5 733 aaKnown RBP22.35■■□□□ 1.17
CPSF1-209ENST00000532725 DEFB128Q7Z7B8 93 aa22.35■■□□□ 1.17
CPSF1-209ENST00000532725 C4orf32Q8N8J7 132 aa22.35■■□□□ 1.17
CPSF1-209ENST00000532725 TTC12Q9H892 705 aaPredicted RBP22.35■■□□□ 1.17
CPSF1-209ENST00000532725 NOL7Q9UMY1 257 aaKnown RBP22.35■■□□□ 1.17
CPSF1-209ENST00000532725 MYH9P35579 1960 aaKnown RBP22.34■■□□□ 1.17
CPSF1-209ENST00000532725 NBNO60934 754 aa22.34■■□□□ 1.17
CPSF1-209ENST00000532725 CXCL10P02778 98 aa22.34■■□□□ 1.17
CPSF1-209ENST00000532725 PFKMP08237 780 aa22.34■■□□□ 1.17
CPSF1-209ENST00000532725 TXKP42681 527 aa22.34■■□□□ 1.17
CPSF1-209ENST00000532725 FAM26DQ5JW98 314 aa22.34■■□□□ 1.17
CPSF1-209ENST00000532725 DNAJB3Q8WWF6 145 aa22.34■■□□□ 1.17
CPSF1-209ENST00000532725 HERVK_113Q902F9 699 aa22.34■■□□□ 1.17
CPSF1-209ENST00000532725 FAM167AQ96KS9 214 aa22.34■■□□□ 1.17
CPSF1-209ENST00000532725 COL1A2P08123 1366 aa22.34■■□□□ 1.17
CPSF1-209ENST00000532725 OATP04181 439 aa22.33■■□□□ 1.17
CPSF1-209ENST00000532725 P4HBP07237 508 aaKnown RBP22.33■■□□□ 1.17
CPSF1-209ENST00000532725 FXR1P51114 621 aaKnown RBP eCLIP22.33■■□□□ 1.17
CPSF1-209ENST00000532725 PSMC5P62195 406 aa22.33■■□□□ 1.17
CPSF1-209ENST00000532725 PRKCEQ02156 737 aa22.33■■□□□ 1.17
CPSF1-209ENST00000532725 NBR1Q14596 966 aa22.33■■□□□ 1.17
CPSF1-209ENST00000532725 BANK1Q8NDB2 785 aa22.33■■□□□ 1.17
CPSF1-209ENST00000532725 RNPC3Q96LT9 517 aaKnown RBP22.33■■□□□ 1.17
CPSF1-209ENST00000532725 NIFKQ9BYG3 293 aaKnown RBP22.33■■□□□ 1.17
CPSF1-209ENST00000532725 PCDHB6Q9Y5E3 794 aa22.33■■□□□ 1.17
CPSF1-209ENST00000532725 SCN5AQ14524 2016 aa22.32■■□□□ 1.16
CPSF1-209ENST00000532725 SMIM35A0A1B0GVV1 85 aa22.32■■□□□ 1.16
CPSF1-209ENST00000532725 SOX1O00570 391 aaPredicted RBP22.32■■□□□ 1.16
CPSF1-209ENST00000532725 CHRNA1P02708 482 aa22.32■■□□□ 1.16
CPSF1-209ENST00000532725 PDCP20941 246 aa22.32■■□□□ 1.16
CPSF1-209ENST00000532725 QARSP47897 775 aaKnown RBP22.32■■□□□ 1.16
CPSF1-209ENST00000532725 XKR3Q5GH77 459 aa22.32■■□□□ 1.16
CPSF1-209ENST00000532725 NCAPH2Q6IBW4 605 aa22.32■■□□□ 1.16
CPSF1-209ENST00000532725 OTOP2Q7RTS6 562 aa22.32■■□□□ 1.16
CPSF1-209ENST00000532725 TET1Q8NFU7 2136 aa22.32■■□□□ 1.16
CPSF1-209ENST00000532725 OSBPL7Q9BZF2 842 aa22.32■■□□□ 1.16
CPSF1-209ENST00000532725 FOXD4L1Q9NU39 408 aa22.32■■□□□ 1.16
CPSF1-209ENST00000532725 WDR81Q562E7 1941 aa22.31■■□□□ 1.16
CPSF1-209ENST00000532725 RBAK-RBAKDNI3L0D1 243 aa22.31■■□□□ 1.16
CPSF1-209ENST00000532725 TARBP2Q15633 366 aaKnown RBP22.31■■□□□ 1.16
CPSF1-209ENST00000532725 RSPH3Q86UC2 560 aa22.31■■□□□ 1.16
CPSF1-209ENST00000532725 HSCBQ8IWL3 235 aa22.31■■□□□ 1.16
CPSF1-209ENST00000532725 KIAA0319LQ8IZA0 1049 aa22.31■■□□□ 1.16
CPSF1-209ENST00000532725 HSD17B14Q9BPX1 270 aa22.31■■□□□ 1.16
CPSF1-209ENST00000532725 FTOQ9C0B1 505 aaKnown RBP eCLIP22.31■■□□□ 1.16
CPSF1-209ENST00000532725 RGL1Q9NZL6 768 aa22.31■■□□□ 1.16
CPSF1-209ENST00000532725 CXXC1Q9P0U4 656 aaPredicted RBP22.31■■□□□ 1.16
CPSF1-209ENST00000532725 WRAP73Q9P2S5 460 aaPredicted RBP22.31■■□□□ 1.16
CPSF1-209ENST00000532725 CEP131Q9UPN4 1083 aa22.31■■□□□ 1.16
CPSF1-209ENST00000532725 LAMA2P24043 3122 aaKnown RBP22.3■■□□□ 1.16
CPSF1-209ENST00000532725 SLITRK3O94933 977 aa22.3■■□□□ 1.16
CPSF1-209ENST00000532725 C22orf31O95567 290 aa22.3■■□□□ 1.16
CPSF1-209ENST00000532725 RPLP2P05387 115 aaKnown RBP22.3■■□□□ 1.16
CPSF1-209ENST00000532725 CTSHP09668 335 aa22.3■■□□□ 1.16
CPSF1-209ENST00000532725 OR52Z1P0C646 297 aa22.3■■□□□ 1.16
CPSF1-209ENST00000532725 SYT1P21579 422 aa22.3■■□□□ 1.16
CPSF1-209ENST00000532725 MGAT3Q09327 533 aa22.3■■□□□ 1.16
CPSF1-209ENST00000532725 RILPL1Q5EBL4 403 aa22.3■■□□□ 1.16
CPSF1-209ENST00000532725 NME8Q8N427 588 aa22.3■■□□□ 1.16
CPSF1-209ENST00000532725 DYDC2Q96IM9 177 aa22.3■■□□□ 1.16
CPSF1-209ENST00000532725 CEP89Q96ST8 783 aa22.3■■□□□ 1.16
CPSF1-209ENST00000532725 FAM49AQ9H0Q0 323 aaPredicted RBP22.3■■□□□ 1.16
CPSF1-209ENST00000532725 EIF4ENIF1Q9NRA8 985 aaKnown RBP22.3■■□□□ 1.16
CPSF1-209ENST00000532725 DDX11L8A8MPP1 907 aa22.29■■□□□ 1.16
CPSF1-209ENST00000532725 MAGEB2O15479 319 aa22.29■■□□□ 1.16
CPSF1-209ENST00000532725 TECP42680 631 aa22.29■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms