RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 CLIC4Q9Y696 253 aa16.25■□□□□ 0.19
CPSF1-206ENST00000531480 TANC1Q9C0D5 1861 aa16.25■□□□□ 0.19
CPSF1-206ENST00000531480 TRIOBPQ9H2D6 2365 aa16.24■□□□□ 0.19
CPSF1-206ENST00000531480 C17orf102A2RUQ5 167 aa16.24■□□□□ 0.19
CPSF1-206ENST00000531480 TRIM43BA6NCK2 446 aa16.24■□□□□ 0.19
CPSF1-206ENST00000531480 RRN3P2A6NIE6 340 aa16.24■□□□□ 0.19
CPSF1-206ENST00000531480 OATP04181 439 aa16.24■□□□□ 0.19
CPSF1-206ENST00000531480 SPATA31C1P0DKV0 1188 aa16.24■□□□□ 0.19
CPSF1-206ENST00000531480 GNAT1P11488 350 aa16.24■□□□□ 0.19
CPSF1-206ENST00000531480 INSRRP14616 1297 aa16.24■□□□□ 0.19
CPSF1-206ENST00000531480 MUTP22033 750 aa16.24■□□□□ 0.19
CPSF1-206ENST00000531480 PRKCEQ02156 737 aa16.24■□□□□ 0.19
CPSF1-206ENST00000531480 PPFIA1Q13136 1202 aa16.24■□□□□ 0.19
CPSF1-206ENST00000531480 PTK7Q13308 1070 aa16.24■□□□□ 0.19
CPSF1-206ENST00000531480 SLC39A14Q15043 492 aa16.24■□□□□ 0.19
CPSF1-206ENST00000531480 TARBP2Q15633 366 aaKnown RBP16.24■□□□□ 0.19
CPSF1-206ENST00000531480 GRIK4Q16099 956 aa16.24■□□□□ 0.19
CPSF1-206ENST00000531480 PTGISQ16647 500 aa16.24■□□□□ 0.19
CPSF1-206ENST00000531480 TMEM266Q2M3C6 531 aa16.24■□□□□ 0.19
CPSF1-206ENST00000531480 NCAPH2Q6IBW4 605 aa16.24■□□□□ 0.19
CPSF1-206ENST00000531480 DTHD1Q6ZMT9 781 aa16.24■□□□□ 0.19
CPSF1-206ENST00000531480 SH3RF1Q7Z6J0 888 aa16.24■□□□□ 0.19
CPSF1-206ENST00000531480 RPAINQ86UA6 219 aa16.24■□□□□ 0.19
CPSF1-206ENST00000531480 C7orf61Q8IZ16 206 aa16.24■□□□□ 0.19
CPSF1-206ENST00000531480 PPP1R13LQ8WUF5 828 aa16.24■□□□□ 0.19
CPSF1-206ENST00000531480 DHX38Q92620 1227 aaKnown RBP16.24■□□□□ 0.19
CPSF1-206ENST00000531480 TRIM43Q96BQ3 446 aaPredicted RBP16.24■□□□□ 0.19
CPSF1-206ENST00000531480 EIF2AK1Q9BQI3 630 aaKnown RBP16.24■□□□□ 0.19
CPSF1-206ENST00000531480 POLR3CQ9BUI4 534 aaPredicted RBP16.24■□□□□ 0.19
CPSF1-206ENST00000531480 FTOQ9C0B1 505 aaKnown RBP eCLIP16.24■□□□□ 0.19
CPSF1-206ENST00000531480 SETD4Q9NVD3 440 aa16.24■□□□□ 0.19
CPSF1-206ENST00000531480 NR2E3Q9Y5X4 410 aa16.24■□□□□ 0.19
CPSF1-206ENST00000531480 TCHHQ07283 1943 aa16.23■□□□□ 0.19
CPSF1-206ENST00000531480 LOXHD1Q8IVV2 1947 aa16.23■□□□□ 0.19
CPSF1-206ENST00000531480 DKC1O60832 514 aaKnown RBP eCLIP16.23■□□□□ 0.19
CPSF1-206ENST00000531480 RPA1P27694 616 aa16.23■□□□□ 0.19
CPSF1-206ENST00000531480 ZNF200P98182 395 aaPredicted RBP16.23■□□□□ 0.19
CPSF1-206ENST00000531480 TRIM71Q2Q1W2 868 aaKnown RBP16.23■□□□□ 0.19
CPSF1-206ENST00000531480 XKR3Q5GH77 459 aa16.23■□□□□ 0.19
CPSF1-206ENST00000531480 FAM47CQ5HY64 1035 aa16.23■□□□□ 0.19
CPSF1-206ENST00000531480 ZNF484Q5JVG2 852 aa16.23■□□□□ 0.19
CPSF1-206ENST00000531480 BANK1Q8NDB2 785 aa16.23■□□□□ 0.19
CPSF1-206ENST00000531480 DYDC2Q96IM9 177 aa16.23■□□□□ 0.19
CPSF1-206ENST00000531480 LXNQ9BS40 222 aa16.23■□□□□ 0.19
CPSF1-206ENST00000531480 NOC4LQ9BVI4 516 aaKnown RBP16.23■□□□□ 0.19
CPSF1-206ENST00000531480 RAB34Q9BZG1 259 aa16.23■□□□□ 0.19
CPSF1-206ENST00000531480 ZSWIM4Q9H7M6 989 aa16.23■□□□□ 0.19
CPSF1-206ENST00000531480 TUFT1Q9NNX1 390 aa16.23■□□□□ 0.19
CPSF1-206ENST00000531480 RGL1Q9NZL6 768 aa16.23■□□□□ 0.19
CPSF1-206ENST00000531480 STK24Q9Y6E0 443 aa16.23■□□□□ 0.19
CPSF1-206ENST00000531480 EVPLQ92817 2033 aa16.23■□□□□ 0.19
CPSF1-206ENST00000531480 PITPNM1O00562 1244 aa16.22■□□□□ 0.19
CPSF1-206ENST00000531480 TREHO43280 583 aa16.22■□□□□ 0.19
CPSF1-206ENST00000531480 YEATS4O95619 227 aa16.22■□□□□ 0.19
CPSF1-206ENST00000531480 ITGB8P26012 769 aa16.22■□□□□ 0.19
CPSF1-206ENST00000531480 ANO5Q75V66 913 aa16.22■□□□□ 0.19
CPSF1-206ENST00000531480 CATSPER3Q86XQ3 398 aa16.22■□□□□ 0.19
CPSF1-206ENST00000531480 LINC00301Q8NCQ3 95 aa16.22■□□□□ 0.19
CPSF1-206ENST00000531480 CAGE1Q8TC20 777 aa16.22■□□□□ 0.19
CPSF1-206ENST00000531480 AK8Q96MA6 479 aa16.22■□□□□ 0.19
CPSF1-206ENST00000531480 ZNF396Q96N95 335 aaPredicted RBP16.22■□□□□ 0.19
CPSF1-206ENST00000531480 MMTAG2Q9BU76 263 aaKnown RBP16.22■□□□□ 0.19
CPSF1-206ENST00000531480 NRBP2Q9NSY0 501 aa16.22■□□□□ 0.19
CPSF1-206ENST00000531480 TMEM39AQ9NV64 488 aa16.22■□□□□ 0.19
CPSF1-206ENST00000531480 LRWD1Q9UFC0 647 aa16.22■□□□□ 0.19
CPSF1-206ENST00000531480 TRPC6Q9Y210 931 aa16.22■□□□□ 0.19
CPSF1-206ENST00000531480 PPME1Q9Y570 386 aa16.22■□□□□ 0.19
CPSF1-206ENST00000531480 SLC26A4O43511 780 aa16.21■□□□□ 0.19
CPSF1-206ENST00000531480 CAND2O75155 1236 aa16.21■□□□□ 0.19
CPSF1-206ENST00000531480 MED24O75448 989 aa16.21■□□□□ 0.19
CPSF1-206ENST00000531480 C22orf31O95567 290 aa16.21■□□□□ 0.19
CPSF1-206ENST00000531480 TIMP1P01033 207 aa16.21■□□□□ 0.19
CPSF1-206ENST00000531480 XRCC6P12956 609 aaKnown RBP eCLIP16.21■□□□□ 0.19
CPSF1-206ENST00000531480 FXR1P51114 621 aaKnown RBP eCLIP16.21■□□□□ 0.19
CPSF1-206ENST00000531480 CHMP4BP1P59074 171 aa16.21■□□□□ 0.19
CPSF1-206ENST00000531480 NUCB2P80303 420 aa16.21■□□□□ 0.19
CPSF1-206ENST00000531480 HYIQ5T013 277 aa16.21■□□□□ 0.19
CPSF1-206ENST00000531480 HAUS3Q68CZ6 603 aa16.21■□□□□ 0.19
CPSF1-206ENST00000531480 TAF2Q6P1X5 1199 aa16.21■□□□□ 0.19
CPSF1-206ENST00000531480 MTHFD1LQ6UB35 978 aa16.21■□□□□ 0.19
CPSF1-206ENST00000531480 LINC01465Q8N7H1 131 aa16.21■□□□□ 0.19
CPSF1-206ENST00000531480 ERMNQ8TAM6 284 aa16.21■□□□□ 0.19
CPSF1-206ENST00000531480 WNT8BQ93098 351 aa16.21■□□□□ 0.19
CPSF1-206ENST00000531480 PCDH10Q9P2E7 1040 aa16.21■□□□□ 0.19
CPSF1-206ENST00000531480 TUBE1Q9UJT0 475 aa16.21■□□□□ 0.19
CPSF1-206ENST00000531480 FBXO2Q9UK22 296 aaPredicted RBP16.21■□□□□ 0.19
CPSF1-206ENST00000531480 CIZ1Q9ULV3 898 aaPredicted RBP16.21■□□□□ 0.19
CPSF1-206ENST00000531480 PCDHA2Q9Y5H9 948 aa16.21■□□□□ 0.19
CPSF1-206ENST00000531480 SRPRBQ9Y5M8 271 aaKnown RBP16.21■□□□□ 0.19
CPSF1-206ENST00000531480 SIP14410 1827 aa16.21■□□□□ 0.19
CPSF1-206ENST00000531480 IGKV6-21A0A0C4DH24 114 aa16.2■□□□□ 0.18
CPSF1-206ENST00000531480 VWA3AA6NCI4 1184 aa16.2■□□□□ 0.18
CPSF1-206ENST00000531480 RPLP2P05387 115 aaKnown RBP16.2■□□□□ 0.18
CPSF1-206ENST00000531480 CYP2C9P11712 490 aa16.2■□□□□ 0.18
CPSF1-206ENST00000531480 LONP1P36776 959 aaKnown RBP16.2■□□□□ 0.18
CPSF1-206ENST00000531480 CYP4A11Q02928 519 aa16.2■□□□□ 0.18
CPSF1-206ENST00000531480 CTTNQ14247 550 aaKnown RBP16.2■□□□□ 0.18
CPSF1-206ENST00000531480 FOXD4L5Q5VV16 416 aaPredicted RBP16.2■□□□□ 0.18
CPSF1-206ENST00000531480 TRAF7Q6Q0C0 670 aa16.2■□□□□ 0.18
CPSF1-206ENST00000531480 CKAP2LQ8IYA6 745 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms