RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 CELF4Q9BZC1 486 aaKnown RBP3.56□□□□□ -1.84
CD44-216ENST00000525293 UCKL1Q9NWZ5 548 aa3.56□□□□□ -1.84
CD44-216ENST00000525293 PTPN22Q9Y2R2 807 aa3.56□□□□□ -1.84
CD44-216ENST00000525293 KCNQ2O43526 872 aa3.55□□□□□ -1.84
CD44-216ENST00000525293 RAPGEF3O95398 923 aa3.55□□□□□ -1.84
CD44-216ENST00000525293 CNOT4O95628 575 aaKnown RBP3.55□□□□□ -1.84
CD44-216ENST00000525293 MMEP08473 750 aa3.55□□□□□ -1.84
CD44-216ENST00000525293 ZNF20P17024 532 aa3.55□□□□□ -1.84
CD44-216ENST00000525293 POLD1P28340 1107 aa3.55□□□□□ -1.84
CD44-216ENST00000525293 HERVK_113P62684 666 aa3.55□□□□□ -1.84
CD44-216ENST00000525293 PUM1Q14671 1186 aaKnown RBP eCLIP3.55□□□□□ -1.84
CD44-216ENST00000525293 USP10Q14694 798 aaKnown RBP3.55□□□□□ -1.84
CD44-216ENST00000525293 ICAM4Q14773 271 aa3.55□□□□□ -1.84
CD44-216ENST00000525293 NFE2L2Q16236 605 aa3.55□□□□□ -1.84
CD44-216ENST00000525293 TM4SF20Q53R12 229 aa3.55□□□□□ -1.84
CD44-216ENST00000525293 SLFN13Q68D06 897 aa3.55□□□□□ -1.84
CD44-216ENST00000525293 FSTL4Q6MZW2 842 aa3.55□□□□□ -1.84
CD44-216ENST00000525293 ABHD17CQ6PCB6 329 aa3.55□□□□□ -1.84
CD44-216ENST00000525293 CIR1Q86X95 450 aaPredicted RBP3.55□□□□□ -1.84
CD44-216ENST00000525293 NOSTRINQ8IVI9 506 aa3.55□□□□□ -1.84
CD44-216ENST00000525293 REXO1L1PQ8IX06 675 aa3.55□□□□□ -1.84
CD44-216ENST00000525293 TTC9BQ8N6N2 239 aa3.55□□□□□ -1.84
CD44-216ENST00000525293 C2orf69Q8N8R5 385 aa3.55□□□□□ -1.84
CD44-216ENST00000525293 IGSF22Q8N9C0 903 aa3.55□□□□□ -1.84
CD44-216ENST00000525293 BORCS6Q96GS4 357 aa3.55□□□□□ -1.84
CD44-216ENST00000525293 CLUHP3Q96NS8 147 aa3.55□□□□□ -1.84
CD44-216ENST00000525293 AMNQ9BXJ7 453 aa3.55□□□□□ -1.84
CD44-216ENST00000525293 CARD11Q9BXL7 1154 aa3.55□□□□□ -1.84
CD44-216ENST00000525293 KATNBL1Q9H079 304 aa3.55□□□□□ -1.84
CD44-216ENST00000525293 ZSWIM4Q9H7M6 989 aa3.55□□□□□ -1.84
CD44-216ENST00000525293 NCOA5Q9HCD5 579 aaKnown RBP3.55□□□□□ -1.84
CD44-216ENST00000525293 TRIM39Q9HCM9 518 aa3.55□□□□□ -1.84
CD44-216ENST00000525293 INCENPQ9NQS7 918 aa3.55□□□□□ -1.84
CD44-216ENST00000525293 GALNT8Q9NY28 637 aa3.55□□□□□ -1.84
CD44-216ENST00000525293 BTBD7Q9P203 1132 aa3.55□□□□□ -1.84
CD44-216ENST00000525293 SLC12A8A0AV02 714 aa3.54□□□□□ -1.84
CD44-216ENST00000525293 PRAMEF22A3QJZ6 481 aa3.54□□□□□ -1.84
CD44-216ENST00000525293 PLD2O14939 933 aa3.54□□□□□ -1.84
CD44-216ENST00000525293 MPIG6BO95866 241 aa3.54□□□□□ -1.84
CD44-216ENST00000525293 AOAHP28039 575 aa3.54□□□□□ -1.84
CD44-216ENST00000525293 ADCY8P40145 1251 aa3.54□□□□□ -1.84
CD44-216ENST00000525293 RRADP55042 308 aa3.54□□□□□ -1.84
CD44-216ENST00000525293 IL13RA1P78552 427 aa3.54□□□□□ -1.84
CD44-216ENST00000525293 TOP3AQ13472 1001 aaPredicted RBP3.54□□□□□ -1.84
CD44-216ENST00000525293 NOLC1Q14978 699 aaKnown RBP eCLIP3.54□□□□□ -1.84
CD44-216ENST00000525293 TMEM132BQ14DG7 1078 aa3.54□□□□□ -1.84
CD44-216ENST00000525293 LRSAM1Q6UWE0 723 aa3.54□□□□□ -1.84
CD44-216ENST00000525293 IFNL2Q8IZJ0 200 aa3.54□□□□□ -1.84
CD44-216ENST00000525293 MRFAP1L1Q96HT8 127 aa3.54□□□□□ -1.84
CD44-216ENST00000525293 GNRHR2Q96P88 292 aa3.54□□□□□ -1.84
CD44-216ENST00000525293 GBP4Q96PP9 640 aa3.54□□□□□ -1.84
CD44-216ENST00000525293 LRRC37BQ96QE4 947 aa3.54□□□□□ -1.84
CD44-216ENST00000525293 KRTAP3-1Q9BYR8 98 aa3.54□□□□□ -1.84
CD44-216ENST00000525293 MEGF9Q9H1U4 602 aa3.54□□□□□ -1.84
CD44-216ENST00000525293 DEF6Q9H4E7 631 aa3.54□□□□□ -1.84
CD44-216ENST00000525293 KANSL2Q9H9L4 492 aa3.54□□□□□ -1.84
CD44-216ENST00000525293 KCNH7Q9NS40 1196 aa3.54□□□□□ -1.84
CD44-216ENST00000525293 CDC42EP3Q9UKI2 254 aa3.54□□□□□ -1.84
CD44-216ENST00000525293 MYRFQ9Y2G1 1151 aa3.54□□□□□ -1.84
CD44-216ENST00000525293 SLC4A7Q9Y6M7 1214 aa3.54□□□□□ -1.84
CD44-216ENST00000525293 RASSF10A6NK89 507 aa3.53□□□□□ -1.84
CD44-216ENST00000525293 FOXP2O15409 715 aa3.53□□□□□ -1.84
CD44-216ENST00000525293 CUTAO60888 179 aa3.53□□□□□ -1.84
CD44-216ENST00000525293 KRT37O76014 449 aa3.53□□□□□ -1.84
CD44-216ENST00000525293 NPTXRO95502 500 aa3.53□□□□□ -1.84
CD44-216ENST00000525293 ZBTB48P10074 688 aaPredicted RBP3.53□□□□□ -1.84
CD44-216ENST00000525293 ECE1P42892 770 aa3.53□□□□□ -1.84
CD44-216ENST00000525293 KCNQ1P51787 676 aa3.53□□□□□ -1.84
CD44-216ENST00000525293 IRF9Q00978 393 aa3.53□□□□□ -1.84
CD44-216ENST00000525293 SQSTM1Q13501 440 aa3.53□□□□□ -1.84
CD44-216ENST00000525293 CCDC144BQ3MJ40 725 aa3.53□□□□□ -1.84
CD44-216ENST00000525293 TMEM177Q53S58 311 aa3.53□□□□□ -1.84
CD44-216ENST00000525293 ZNF585AQ6P3V2 769 aa3.53□□□□□ -1.84
CD44-216ENST00000525293 CXXC5Q7LFL8 322 aaKnown RBP3.53□□□□□ -1.84
CD44-216ENST00000525293 FAM9AQ8IZU1 332 aaPredicted RBP3.53□□□□□ -1.84
CD44-216ENST00000525293 HIPK4Q8NE63 616 aa3.53□□□□□ -1.84
CD44-216ENST00000525293 WDR48Q8TAF3 677 aa3.53□□□□□ -1.84
CD44-216ENST00000525293 SH3TC2Q8TF17 1288 aa3.53□□□□□ -1.84
CD44-216ENST00000525293 ASB15Q8WXK1 588 aa3.53□□□□□ -1.84
CD44-216ENST00000525293 DLG3Q92796 817 aa3.53□□□□□ -1.84
CD44-216ENST00000525293 ERCC4Q92889 916 aaPredicted RBP3.53□□□□□ -1.84
CD44-216ENST00000525293 DVL3Q92997 716 aaPredicted RBP3.53□□□□□ -1.84
CD44-216ENST00000525293 WNK4Q96J92 1243 aa3.53□□□□□ -1.84
CD44-216ENST00000525293 DRC1Q96MC2 740 aa3.53□□□□□ -1.84
CD44-216ENST00000525293 LMF1Q96S06 567 aa3.53□□□□□ -1.84
CD44-216ENST00000525293 BTBD2Q9BX70 525 aa3.53□□□□□ -1.84
CD44-216ENST00000525293 C1QTNF3Q9BXJ4 246 aa3.53□□□□□ -1.84
CD44-216ENST00000525293 ZDHHC5Q9C0B5 715 aa3.53□□□□□ -1.84
CD44-216ENST00000525293 SEC61A2Q9H9S3 476 aa3.53□□□□□ -1.84
CD44-216ENST00000525293 CD248Q9HCU0 757 aa3.53□□□□□ -1.84
CD44-216ENST00000525293 B3GALT1Q9Y5Z6 326 aa3.53□□□□□ -1.84
CD44-216ENST00000525293 PATE3B3GLJ2 98 aa3.52□□□□□ -1.85
CD44-216ENST00000525293 GOLGA6L22H0YM25 854 aa3.52□□□□□ -1.85
CD44-216ENST00000525293 PPP1R12AO14974 1030 aaPredicted RBP3.52□□□□□ -1.85
CD44-216ENST00000525293 OPA1O60313 960 aa3.52□□□□□ -1.85
CD44-216ENST00000525293 ZNF623O75123 536 aa3.52□□□□□ -1.85
CD44-216ENST00000525293 HIP1RO75146 1068 aa3.52□□□□□ -1.85
CD44-216ENST00000525293 HMGCRP04035 888 aa3.52□□□□□ -1.85
CD44-216ENST00000525293 ETV4P43268 484 aa3.52□□□□□ -1.85
CD44-216ENST00000525293 CD83Q01151 205 aa3.52□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms