RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 LIMA1Q9UHB6 759 aaKnown RBP12.68□□□□□ -0.38
SYNPO-204ENST00000519664 CAPN11Q9UMQ6 739 aa12.68□□□□□ -0.38
SYNPO-204ENST00000519664 PPP1R3GB7ZBB8 358 aa12.68□□□□□ -0.38
SYNPO-204ENST00000519664 TFAMQ00059 246 aaKnown RBP12.68□□□□□ -0.38
SYNPO-204ENST00000519664 NCAPHQ15003 741 aa12.68□□□□□ -0.38
SYNPO-204ENST00000519664 SGO2Q562F6 1265 aa12.68□□□□□ -0.38
SYNPO-204ENST00000519664 CCDC13Q8IYE1 715 aa12.68□□□□□ -0.38
SYNPO-204ENST00000519664 RSAD2Q8WXG1 361 aa12.68□□□□□ -0.38
SYNPO-204ENST00000519664 SLC7A3Q8WY07 619 aa12.68□□□□□ -0.38
SYNPO-204ENST00000519664 LRRC1Q9BTT6 524 aa12.68□□□□□ -0.38
SYNPO-204ENST00000519664 RAVER2Q9HCJ3 691 aaKnown RBP12.68□□□□□ -0.38
SYNPO-204ENST00000519664 ATF5Q9Y2D1 282 aaPredicted RBP12.68□□□□□ -0.38
SYNPO-204ENST00000519664 REREQ9P2R6 1566 aa12.68□□□□□ -0.38
SYNPO-204ENST00000519664 CHRNA5P30532 468 aa12.67□□□□□ -0.38
SYNPO-204ENST00000519664 YARSP54577 528 aaKnown RBP12.67□□□□□ -0.38
SYNPO-204ENST00000519664 RBM43Q6ZSC3 357 aaKnown RBP12.67□□□□□ -0.38
SYNPO-204ENST00000519664 ZBTB33Q86T24 672 aa12.67□□□□□ -0.38
SYNPO-204ENST00000519664 RNF34Q969K3 372 aa12.67□□□□□ -0.38
SYNPO-204ENST00000519664 RAB20Q9NX57 234 aa12.67□□□□□ -0.38
SYNPO-204ENST00000519664 DUSP10Q9Y6W6 482 aa12.67□□□□□ -0.38
SYNPO-204ENST00000519664 SYNJ2BP-COX16A0A087WUM0 186 aa12.67□□□□□ -0.38
SYNPO-204ENST00000519664 PLEKP08567 350 aaPredicted RBP12.67□□□□□ -0.38
SYNPO-204ENST00000519664 KNOP1Q1ED39 458 aaKnown RBP12.67□□□□□ -0.38
SYNPO-204ENST00000519664 TMED8Q6PL24 325 aaPredicted RBP12.67□□□□□ -0.38
SYNPO-204ENST00000519664 REXO1L1PQ8IX06 675 aa12.67□□□□□ -0.38
SYNPO-204ENST00000519664 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.67□□□□□ -0.38
SYNPO-204ENST00000519664 MASTLQ96GX5 879 aa12.67□□□□□ -0.38
SYNPO-204ENST00000519664 COX16Q9P0S2 106 aa12.67□□□□□ -0.38
SYNPO-204ENST00000519664 CEP72Q9P209 647 aa12.67□□□□□ -0.38
SYNPO-204ENST00000519664 ABCB11O95342 1321 aa12.67□□□□□ -0.38
SYNPO-204ENST00000519664 SLC16A4O15374 487 aa12.67□□□□□ -0.38
SYNPO-204ENST00000519664 ACSL3O95573 720 aa12.67□□□□□ -0.38
SYNPO-204ENST00000519664 TFRCP02786 760 aaKnown RBP12.67□□□□□ -0.38
SYNPO-204ENST00000519664 GCKP35557 465 aa12.67□□□□□ -0.38
SYNPO-204ENST00000519664 CLUL1Q15846 466 aa12.67□□□□□ -0.38
SYNPO-204ENST00000519664 PALM2Q8IXS6 379 aa12.67□□□□□ -0.38
SYNPO-204ENST00000519664 SPATA4Q8NEY3 305 aa12.67□□□□□ -0.38
SYNPO-204ENST00000519664 HEMGNQ9BXL5 484 aa12.67□□□□□ -0.38
SYNPO-204ENST00000519664 AGXT2Q9BYV1 514 aa12.67□□□□□ -0.38
SYNPO-204ENST00000519664 HPSEQ9Y251 543 aa12.67□□□□□ -0.38
SYNPO-204ENST00000519664 CSADQ9Y600 493 aa12.67□□□□□ -0.38
SYNPO-204ENST00000519664 STXBP3O00186 592 aa12.67□□□□□ -0.38
SYNPO-204ENST00000519664 ECE2O60344 883 aa12.67□□□□□ -0.38
SYNPO-204ENST00000519664 ATF2P15336 505 aa12.67□□□□□ -0.38
SYNPO-204ENST00000519664 NR1D1P20393 614 aa12.67□□□□□ -0.38
SYNPO-204ENST00000519664 EAPPQ56P03 285 aaPredicted RBP12.67□□□□□ -0.38
SYNPO-204ENST00000519664 RCSD1Q6JBY9 416 aa12.67□□□□□ -0.38
SYNPO-204ENST00000519664 RIOK1Q9BRS2 568 aaKnown RBP12.67□□□□□ -0.38
SYNPO-204ENST00000519664 PPP1R12CQ9BZL4 782 aa12.67□□□□□ -0.38
SYNPO-204ENST00000519664 PARP2Q9UGN5 583 aa12.67□□□□□ -0.38
SYNPO-204ENST00000519664 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.67□□□□□ -0.38
SYNPO-204ENST00000519664 ADGRB2O60241 1585 aa12.67□□□□□ -0.38
SYNPO-204ENST00000519664 USP32Q8NFA0 1604 aa12.67□□□□□ -0.38
SYNPO-204ENST00000519664 CTIFO43310 598 aaKnown RBP12.66□□□□□ -0.38
SYNPO-204ENST00000519664 MARK3P27448 753 aa12.66□□□□□ -0.38
SYNPO-204ENST00000519664 BFSP1Q12934 665 aa12.66□□□□□ -0.38
SYNPO-204ENST00000519664 PODNQ7Z5L7 613 aa12.66□□□□□ -0.38
SYNPO-204ENST00000519664 LRRN4CLQ8ND94 238 aa12.66□□□□□ -0.38
SYNPO-204ENST00000519664 FMO2Q99518 471 aa12.66□□□□□ -0.38
SYNPO-204ENST00000519664 DCAF8L1A6NGE4 600 aa12.66□□□□□ -0.38
SYNPO-204ENST00000519664 EIF3CLB5ME19 914 aaKnown RBP12.66□□□□□ -0.38
SYNPO-204ENST00000519664 SRGAP2CP0DJJ0 459 aa12.66□□□□□ -0.38
SYNPO-204ENST00000519664 PDHBP11177 359 aa12.66□□□□□ -0.38
SYNPO-204ENST00000519664 PADI6Q6TGC4 694 aa12.66□□□□□ -0.38
SYNPO-204ENST00000519664 SESTD1Q86VW0 696 aa12.66□□□□□ -0.38
SYNPO-204ENST00000519664 ATP6V0A1Q93050 837 aa12.66□□□□□ -0.38
SYNPO-204ENST00000519664 EIF3CQ99613 913 aaKnown RBP12.66□□□□□ -0.38
SYNPO-204ENST00000519664 SPZ1Q9BXG8 430 aa12.66□□□□□ -0.38
SYNPO-204ENST00000519664 PLCB1Q9NQ66 1216 aa12.66□□□□□ -0.38
SYNPO-204ENST00000519664 EHD2Q9NZN4 543 aa12.66□□□□□ -0.38
SYNPO-204ENST00000519664 PASKQ96RG2 1323 aa12.66□□□□□ -0.38
SYNPO-204ENST00000519664 SSTR3P32745 418 aaPredicted RBP12.66□□□□□ -0.38
SYNPO-204ENST00000519664 USP14P54578 494 aa12.66□□□□□ -0.38
SYNPO-204ENST00000519664 ZNF543Q08ER8 600 aa12.66□□□□□ -0.38
SYNPO-204ENST00000519664 DRAP1Q14919 205 aaPredicted RBP12.66□□□□□ -0.38
SYNPO-204ENST00000519664 PASD1Q8IV76 773 aa12.66□□□□□ -0.38
SYNPO-204ENST00000519664 RNF169Q8NCN4 708 aa12.66□□□□□ -0.38
SYNPO-204ENST00000519664 HAUS1Q96CS2 278 aa12.66□□□□□ -0.38
SYNPO-204ENST00000519664 RMDN3Q96TC7 470 aa12.66□□□□□ -0.38
SYNPO-204ENST00000519664 APOL6Q9BWW8 343 aa12.66□□□□□ -0.38
SYNPO-204ENST00000519664 NEDD9Q14511 834 aa12.66□□□□□ -0.38
SYNPO-204ENST00000519664 KCNB1Q14721 858 aa12.66□□□□□ -0.38
SYNPO-204ENST00000519664 SBK1Q52WX2 424 aa12.66□□□□□ -0.38
SYNPO-204ENST00000519664 SCARA5Q6ZMJ2 495 aa12.66□□□□□ -0.38
SYNPO-204ENST00000519664 CDAN1Q8IWY9 1227 aa12.66□□□□□ -0.38
SYNPO-204ENST00000519664 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.66□□□□□ -0.38
SYNPO-204ENST00000519664 SAAL1Q96ER3 474 aa12.66□□□□□ -0.38
SYNPO-204ENST00000519664 CCDC97Q96F63 343 aaPredicted RBP12.66□□□□□ -0.38
SYNPO-204ENST00000519664 THOC1Q96FV9 657 aaKnown RBP12.66□□□□□ -0.38
SYNPO-204ENST00000519664 ZNF277Q9NRM2 450 aaPredicted RBP12.66□□□□□ -0.38
SYNPO-204ENST00000519664 PLAAQ9Y263 795 aa12.66□□□□□ -0.38
SYNPO-204ENST00000519664 AFF2P51816 1311 aa12.66□□□□□ -0.38
SYNPO-204ENST00000519664 RHOBTB3O94955 611 aa12.65□□□□□ -0.38
SYNPO-204ENST00000519664 VEGFAP15692 232 aaPredicted RBP12.65□□□□□ -0.38
SYNPO-204ENST00000519664 FGFR2P21802 821 aa12.65□□□□□ -0.38
SYNPO-204ENST00000519664 PPP2R5EQ16537 467 aa12.65□□□□□ -0.38
SYNPO-204ENST00000519664 CFAP157Q5JU67 520 aa12.65□□□□□ -0.38
SYNPO-204ENST00000519664 DCAF15Q66K64 600 aa12.65□□□□□ -0.38
SYNPO-204ENST00000519664 ARHGAP27Q6ZUM4 889 aa12.65□□□□□ -0.38
SYNPO-204ENST00000519664 MLXIPLQ9NP71 852 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms