RNA–Protein interactions for RNA: ENST00000515847.1

LIMCH1-222, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-222ENST00000515847 ITGB3BPQ13352 177 aaPredicted RBP8.7□□□□□ -1.02
LIMCH1-222ENST00000515847 MFSD10Q14728 455 aa8.7□□□□□ -1.02
LIMCH1-222ENST00000515847 STK38Q15208 465 aa8.7□□□□□ -1.02
LIMCH1-222ENST00000515847 FAM47CQ5HY64 1035 aa8.7□□□□□ -1.02
LIMCH1-222ENST00000515847 KRT79Q5XKE5 535 aa8.7□□□□□ -1.02
LIMCH1-222ENST00000515847 PDXDC2PQ6P474 469 aa8.7□□□□□ -1.02
LIMCH1-222ENST00000515847 RSPH3Q86UC2 560 aa8.7□□□□□ -1.02
LIMCH1-222ENST00000515847 FERMT3Q86UX7 667 aa8.7□□□□□ -1.02
LIMCH1-222ENST00000515847 RASSF8Q8NHQ8 419 aa8.7□□□□□ -1.02
LIMCH1-222ENST00000515847 AFAP1L1Q8TED9 768 aa8.7□□□□□ -1.02
LIMCH1-222ENST00000515847 PPP1R13LQ8WUF5 828 aa8.7□□□□□ -1.02
LIMCH1-222ENST00000515847 KAT2BQ92831 832 aa8.7□□□□□ -1.02
LIMCH1-222ENST00000515847 LENG9Q96B70 501 aa8.7□□□□□ -1.02
LIMCH1-222ENST00000515847 CCDC34Q96HJ3 373 aa8.7□□□□□ -1.02
LIMCH1-222ENST00000515847 CDK5RAP3Q96JB5 506 aa8.7□□□□□ -1.02
LIMCH1-222ENST00000515847 PYM1Q9BRP8 204 aaKnown RBP8.7□□□□□ -1.02
LIMCH1-222ENST00000515847 TTC12Q9H892 705 aaPredicted RBP8.7□□□□□ -1.02
LIMCH1-222ENST00000515847 ZNF302Q9NR11 478 aa8.7□□□□□ -1.02
LIMCH1-222ENST00000515847 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.7□□□□□ -1.02
LIMCH1-222ENST00000515847 DISC1Q9NRI5 854 aa8.7□□□□□ -1.02
LIMCH1-222ENST00000515847 NR2E3Q9Y5X4 410 aa8.7□□□□□ -1.02
LIMCH1-222ENST00000515847 GRIN2DO15399 1336 aa8.7□□□□□ -1.02
LIMCH1-222ENST00000515847 COL1A2P08123 1366 aa8.7□□□□□ -1.02
LIMCH1-222ENST00000515847 RRN3P2A6NIE6 340 aa8.69□□□□□ -1.02
LIMCH1-222ENST00000515847 H3BRB1 525 aa8.69□□□□□ -1.02
LIMCH1-222ENST00000515847 ARVCFO00192 962 aa8.69□□□□□ -1.02
LIMCH1-222ENST00000515847 HBP1O60381 514 aa8.69□□□□□ -1.02
LIMCH1-222ENST00000515847 CAND2O75155 1236 aa8.69□□□□□ -1.02
LIMCH1-222ENST00000515847 LGR5O75473 907 aa8.69□□□□□ -1.02
LIMCH1-222ENST00000515847 P4HBP07237 508 aaKnown RBP8.69□□□□□ -1.02
LIMCH1-222ENST00000515847 LONP1P36776 959 aaKnown RBP8.69□□□□□ -1.02
LIMCH1-222ENST00000515847 TXKP42681 527 aa8.69□□□□□ -1.02
LIMCH1-222ENST00000515847 PSEN2P49810 448 aa8.69□□□□□ -1.02
LIMCH1-222ENST00000515847 CHMP4BP1P59074 171 aa8.69□□□□□ -1.02
LIMCH1-222ENST00000515847 PSMC5P62195 406 aa8.69□□□□□ -1.02
LIMCH1-222ENST00000515847 LSM11P83369 360 aaKnown RBP eCLIP8.69□□□□□ -1.02
LIMCH1-222ENST00000515847 FOXK1P85037 733 aa8.69□□□□□ -1.02
LIMCH1-222ENST00000515847 ATP2C1P98194 919 aaPredicted RBP8.69□□□□□ -1.02
LIMCH1-222ENST00000515847 TLE2Q04725 743 aa8.69□□□□□ -1.02
LIMCH1-222ENST00000515847 ITGA7Q13683 1181 aa8.69□□□□□ -1.02
LIMCH1-222ENST00000515847 EPHA7Q15375 998 aa8.69□□□□□ -1.02
LIMCH1-222ENST00000515847 ZNF174Q15697 407 aa8.69□□□□□ -1.02
LIMCH1-222ENST00000515847 UTP14CQ5TAP6 766 aaKnown RBP8.69□□□□□ -1.02
LIMCH1-222ENST00000515847 NCAPH2Q6IBW4 605 aa8.69□□□□□ -1.02
LIMCH1-222ENST00000515847 TAF2Q6P1X5 1199 aa8.69□□□□□ -1.02
LIMCH1-222ENST00000515847 FAM43BQ6ZT52 329 aaPredicted RBP8.69□□□□□ -1.02
LIMCH1-222ENST00000515847 OTUD6AQ7L8S5 288 aa8.69□□□□□ -1.02
LIMCH1-222ENST00000515847 ANKRD33Q7Z3H0 272 aa8.69□□□□□ -1.02
LIMCH1-222ENST00000515847 SESTD1Q86VW0 696 aa8.69□□□□□ -1.02
LIMCH1-222ENST00000515847 TRIM50Q86XT4 487 aa8.69□□□□□ -1.02
LIMCH1-222ENST00000515847 SLC43A3Q8NBI5 491 aa8.69□□□□□ -1.02
LIMCH1-222ENST00000515847 SPRYD3Q8NCJ5 442 aa8.69□□□□□ -1.02
LIMCH1-222ENST00000515847 TOX2Q96NM4 488 aa8.69□□□□□ -1.02
LIMCH1-222ENST00000515847 SCAND2PQ9GZW5 306 aaPredicted RBP8.69□□□□□ -1.02
LIMCH1-222ENST00000515847 NT5C3AQ9H0P0 336 aa8.69□□□□□ -1.02
LIMCH1-222ENST00000515847 TUT1Q9H6E5 874 aaKnown RBP8.69□□□□□ -1.02
LIMCH1-222ENST00000515847 PDLIM7Q9NR12 457 aa8.69□□□□□ -1.02
LIMCH1-222ENST00000515847 NRBP2Q9NSY0 501 aa8.69□□□□□ -1.02
LIMCH1-222ENST00000515847 ZMYND8Q9ULU4 1186 aaPredicted RBP8.69□□□□□ -1.02
LIMCH1-222ENST00000515847 NRCAMQ92823 1304 aa8.69□□□□□ -1.02
LIMCH1-222ENST00000515847 IGSF9BQ9UPX0 1349 aa8.69□□□□□ -1.02
LIMCH1-222ENST00000515847 LTBP2Q14767 1821 aa8.68□□□□□ -1.02
LIMCH1-222ENST00000515847 GSTTP1A0A1W2PQM5 241 aa8.68□□□□□ -1.02
LIMCH1-222ENST00000515847 C17orf102A2RUQ5 167 aa8.68□□□□□ -1.02
LIMCH1-222ENST00000515847 H0YGN5 161 aa8.68□□□□□ -1.02
LIMCH1-222ENST00000515847 M0QZ92 97 aa8.68□□□□□ -1.02
LIMCH1-222ENST00000515847 WNT7AO00755 349 aa8.68□□□□□ -1.02
LIMCH1-222ENST00000515847 DHX15O43143 795 aaKnown RBP8.68□□□□□ -1.02
LIMCH1-222ENST00000515847 GAS2O43903 313 aaKnown RBP8.68□□□□□ -1.02
LIMCH1-222ENST00000515847 ATG7O95352 703 aa8.68□□□□□ -1.02
LIMCH1-222ENST00000515847 PARNO95453 639 aaKnown RBP8.68□□□□□ -1.02
LIMCH1-222ENST00000515847 BRD1O95696 1058 aa8.68□□□□□ -1.02
LIMCH1-222ENST00000515847 CCNE2O96020 404 aa8.68□□□□□ -1.02
LIMCH1-222ENST00000515847 CLTBP09497 229 aa8.68□□□□□ -1.02
LIMCH1-222ENST00000515847 SYN1P17600 705 aa8.68□□□□□ -1.02
LIMCH1-222ENST00000515847 TMOD1P28289 359 aa8.68□□□□□ -1.02
LIMCH1-222ENST00000515847 QARSP47897 775 aaKnown RBP8.68□□□□□ -1.02
LIMCH1-222ENST00000515847 CDK7P50613 346 aa8.68□□□□□ -1.02
LIMCH1-222ENST00000515847 PPFIA1Q13136 1202 aa8.68□□□□□ -1.02
LIMCH1-222ENST00000515847 PTGDRQ13258 359 aa8.68□□□□□ -1.02
LIMCH1-222ENST00000515847 BFSP2Q13515 415 aa8.68□□□□□ -1.02
LIMCH1-222ENST00000515847 PDIA5Q14554 519 aa8.68□□□□□ -1.02
LIMCH1-222ENST00000515847 KIAA0753Q2KHM9 967 aa8.68□□□□□ -1.02
LIMCH1-222ENST00000515847 NBPF20Q3BBV1 942 aa8.68□□□□□ -1.02
LIMCH1-222ENST00000515847 XKR3Q5GH77 459 aa8.68□□□□□ -1.02
LIMCH1-222ENST00000515847 FAM126BQ8IXS8 530 aa8.68□□□□□ -1.02
LIMCH1-222ENST00000515847 PLPP6Q8IY26 295 aa8.68□□□□□ -1.02
LIMCH1-222ENST00000515847 RETREG2Q8NC44 543 aa8.68□□□□□ -1.02
LIMCH1-222ENST00000515847 CAGE1Q8TC20 777 aa8.68□□□□□ -1.02
LIMCH1-222ENST00000515847 ATP8B4Q8TF62 1192 aa8.68□□□□□ -1.02
LIMCH1-222ENST00000515847 PTCD2Q8WV60 388 aaKnown RBP8.68□□□□□ -1.02
LIMCH1-222ENST00000515847 BBXQ8WY36 941 aaPredicted RBP8.68□□□□□ -1.02
LIMCH1-222ENST00000515847 GJA10Q969M2 543 aa8.68□□□□□ -1.02
LIMCH1-222ENST00000515847 CALML4Q96GE6 196 aa8.68□□□□□ -1.02
LIMCH1-222ENST00000515847 MTMR9Q96QG7 549 aa8.68□□□□□ -1.02
LIMCH1-222ENST00000515847 C16orf70Q9BSU1 422 aa8.68□□□□□ -1.02
LIMCH1-222ENST00000515847 UNC45AQ9H3U1 944 aa8.68□□□□□ -1.02
LIMCH1-222ENST00000515847 ZSWIM4Q9H7M6 989 aa8.68□□□□□ -1.02
LIMCH1-222ENST00000515847 TUFT1Q9NNX1 390 aa8.68□□□□□ -1.02
LIMCH1-222ENST00000515847 PRDM5Q9NQX1 630 aaPredicted RBP8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms