RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 HOXB8P17481 243 aaPredicted RBP12.61□□□□□ -0.39
DDX41-216ENST00000513562 SDSP20132 328 aa12.61□□□□□ -0.39
DDX41-216ENST00000513562 SP100P23497 879 aaPredicted RBP12.61□□□□□ -0.39
DDX41-216ENST00000513562 TECP42680 631 aa12.61□□□□□ -0.39
DDX41-216ENST00000513562 ID4P47928 161 aa12.61□□□□□ -0.39
DDX41-216ENST00000513562 SARSP49591 514 aaKnown RBP12.61□□□□□ -0.39
DDX41-216ENST00000513562 IGBP1P78318 339 aa12.61□□□□□ -0.39
DDX41-216ENST00000513562 GRM4Q14833 912 aa12.61□□□□□ -0.39
DDX41-216ENST00000513562 IMMTQ16891 758 aaKnown RBP12.61□□□□□ -0.39
DDX41-216ENST00000513562 NLRX1Q86UT6 975 aa12.61□□□□□ -0.39
DDX41-216ENST00000513562 GLG1Q92896 1179 aa12.61□□□□□ -0.39
DDX41-216ENST00000513562 NKD2Q969F2 451 aaPredicted RBP12.61□□□□□ -0.39
DDX41-216ENST00000513562 GPRASP2Q96D09 838 aa12.61□□□□□ -0.39
DDX41-216ENST00000513562 SMARCAD1Q9H4L7 1026 aa12.61□□□□□ -0.39
DDX41-216ENST00000513562 NR2E1Q9Y466 385 aa12.61□□□□□ -0.39
DDX41-216ENST00000513562 KDM3AQ9Y4C1 1321 aa12.61□□□□□ -0.39
DDX41-216ENST00000513562 MYH7BA7E2Y1 1941 aa12.6□□□□□ -0.39
DDX41-216ENST00000513562 SPTBN4Q9H254 2564 aa12.6□□□□□ -0.39
DDX41-216ENST00000513562 RRN3P2A6NIE6 340 aa12.6□□□□□ -0.39
DDX41-216ENST00000513562 M0QZ92 97 aa12.6□□□□□ -0.39
DDX41-216ENST00000513562 INSRRP14616 1297 aa12.6□□□□□ -0.39
DDX41-216ENST00000513562 TMEM62Q0P6H9 643 aa12.6□□□□□ -0.39
DDX41-216ENST00000513562 SPOUT1Q5T280 376 aaKnown RBP12.6□□□□□ -0.39
DDX41-216ENST00000513562 MCTP2Q6DN12 878 aa12.6□□□□□ -0.39
DDX41-216ENST00000513562 FAM43BQ6ZT52 329 aaPredicted RBP12.6□□□□□ -0.39
DDX41-216ENST00000513562 FRMD5Q7Z6J6 570 aa12.6□□□□□ -0.39
DDX41-216ENST00000513562 THNSL1Q8IYQ7 743 aa12.6□□□□□ -0.39
DDX41-216ENST00000513562 RILPL2Q969X0 211 aa12.6□□□□□ -0.39
DDX41-216ENST00000513562 CDHR1Q96JP9 859 aa12.6□□□□□ -0.39
DDX41-216ENST00000513562 DSCC1Q9BVC3 393 aa12.6□□□□□ -0.39
DDX41-216ENST00000513562 APOL5Q9BWW9 433 aa12.6□□□□□ -0.39
DDX41-216ENST00000513562 CELF4Q9BZC1 486 aaKnown RBP12.6□□□□□ -0.39
DDX41-216ENST00000513562 TSHZ2Q9NRE2 1034 aa12.6□□□□□ -0.39
DDX41-216ENST00000513562 LZTS1Q9Y250 596 aa12.6□□□□□ -0.39
DDX41-216ENST00000513562 LAMA4Q16363 1823 aa12.6□□□□□ -0.39
DDX41-216ENST00000513562 TBKBP1A7MCY6 615 aa12.59□□□□□ -0.39
DDX41-216ENST00000513562 C2CD4DB7Z1M9 353 aa12.59□□□□□ -0.39
DDX41-216ENST00000513562 PIK3CDO00329 1044 aa12.59□□□□□ -0.39
DDX41-216ENST00000513562 MEIS2O14770 477 aa12.59□□□□□ -0.39
DDX41-216ENST00000513562 MGEA5O60502 916 aa12.59□□□□□ -0.39
DDX41-216ENST00000513562 PLPP4Q5VZY2 271 aa12.59□□□□□ -0.39
DDX41-216ENST00000513562 ASTLQ6HA08 431 aaPredicted RBP12.59□□□□□ -0.39
DDX41-216ENST00000513562 USP17L6PQ6QN14 398 aa12.59□□□□□ -0.39
DDX41-216ENST00000513562 CWC27Q6UX04 472 aaKnown RBP12.59□□□□□ -0.39
DDX41-216ENST00000513562 CYB5R4Q7L1T6 521 aa12.59□□□□□ -0.39
DDX41-216ENST00000513562 ADSSL1Q8N142 457 aa12.59□□□□□ -0.39
DDX41-216ENST00000513562 COLGALT1Q8NBJ5 622 aa12.59□□□□□ -0.39
DDX41-216ENST00000513562 SMARCC2Q8TAQ2 1214 aa12.59□□□□□ -0.39
DDX41-216ENST00000513562 NECTIN4Q96NY8 510 aa12.59□□□□□ -0.39
DDX41-216ENST00000513562 TMEM260Q9NX78 707 aa12.59□□□□□ -0.39
DDX41-216ENST00000513562 HCSTQ9UBK5 93 aa12.59□□□□□ -0.39
DDX41-216ENST00000513562 CDH22Q9UJ99 828 aa12.59□□□□□ -0.39
DDX41-216ENST00000513562 PCDHB7Q9Y5E2 793 aa12.59□□□□□ -0.39
DDX41-216ENST00000513562 PCDHA2Q9Y5H9 948 aa12.59□□□□□ -0.39
DDX41-216ENST00000513562 KIAA1671Q9BY89 1806 aa12.59□□□□□ -0.39
DDX41-216ENST00000513562 DNAH14Q0VDD8 3507 aa12.59□□□□□ -0.39
DDX41-216ENST00000513562 HIDE1A8MVS5 230 aa12.58□□□□□ -0.4
DDX41-216ENST00000513562 ITGB5P18084 799 aa12.58□□□□□ -0.4
DDX41-216ENST00000513562 LAG3P18627 525 aa12.58□□□□□ -0.4
DDX41-216ENST00000513562 CLCN5P51795 746 aa12.58□□□□□ -0.4
DDX41-216ENST00000513562 PLCB3Q01970 1234 aa12.58□□□□□ -0.4
DDX41-216ENST00000513562 APOBRQ0VD83 1088 aa12.58□□□□□ -0.4
DDX41-216ENST00000513562 TROAPQ12815 778 aa12.58□□□□□ -0.4
DDX41-216ENST00000513562 TMEM266Q2M3C6 531 aa12.58□□□□□ -0.4
DDX41-216ENST00000513562 FAM102BQ5T8I3 360 aa12.58□□□□□ -0.4
DDX41-216ENST00000513562 LLGL2Q6P1M3 1020 aa12.58□□□□□ -0.4
DDX41-216ENST00000513562 MRPS27Q92552 414 aaKnown RBP12.58□□□□□ -0.4
DDX41-216ENST00000513562 CUL5Q93034 780 aa12.58□□□□□ -0.4
DDX41-216ENST00000513562 PCYT2Q99447 389 aa12.58□□□□□ -0.4
DDX41-216ENST00000513562 TCF25Q9BQ70 676 aa12.58□□□□□ -0.4
DDX41-216ENST00000513562 SMOC2Q9H3U7 446 aa12.58□□□□□ -0.4
DDX41-216ENST00000513562 POMKQ9H5K3 350 aa12.58□□□□□ -0.4
DDX41-216ENST00000513562 CWH43Q9H720 699 aa12.58□□□□□ -0.4
DDX41-216ENST00000513562 ERVK-5Q9HDB9 667 aa12.58□□□□□ -0.4
DDX41-216ENST00000513562 NGRNQ9NPE2 291 aaKnown RBP12.58□□□□□ -0.4
DDX41-216ENST00000513562 C1orf112Q9NSG2 853 aa12.58□□□□□ -0.4
DDX41-216ENST00000513562 TYW1Q9NV66 732 aaKnown RBP12.58□□□□□ -0.4
DDX41-216ENST00000513562 RNF216Q9NWF9 866 aaPredicted RBP12.58□□□□□ -0.4
DDX41-216ENST00000513562 SMIM35A0A1B0GVV1 85 aa12.57□□□□□ -0.4
DDX41-216ENST00000513562 C9IYK1 514 aa12.57□□□□□ -0.4
DDX41-216ENST00000513562 IBSPP21815 317 aaPredicted RBP12.57□□□□□ -0.4
DDX41-216ENST00000513562 KRT76Q01546 638 aa12.57□□□□□ -0.4
DDX41-216ENST00000513562 ITIH3Q06033 890 aa12.57□□□□□ -0.4
DDX41-216ENST00000513562 NFX1Q12986 1120 aaKnown RBP12.57□□□□□ -0.4
DDX41-216ENST00000513562 MTMR1Q13613 665 aa12.57□□□□□ -0.4
DDX41-216ENST00000513562 TPRNQ4KMQ1 711 aa12.57□□□□□ -0.4
DDX41-216ENST00000513562 NME8Q8N427 588 aa12.57□□□□□ -0.4
DDX41-216ENST00000513562 TRAPPC12Q8WVT3 735 aa12.57□□□□□ -0.4
DDX41-216ENST00000513562 CASP10Q92851 521 aa12.57□□□□□ -0.4
DDX41-216ENST00000513562 TNPO1Q92973 898 aaKnown RBP12.57□□□□□ -0.4
DDX41-216ENST00000513562 ADAM7Q9H2U9 754 aa12.57□□□□□ -0.4
DDX41-216ENST00000513562 ENTPD7Q9NQZ7 604 aa12.57□□□□□ -0.4
DDX41-216ENST00000513562 RGS18Q9NS28 235 aa12.57□□□□□ -0.4
DDX41-216ENST00000513562 UBIAD1Q9Y5Z9 338 aa12.57□□□□□ -0.4
DDX41-216ENST00000513562 DENND3A2RUS2 1198 aa12.56□□□□□ -0.4
DDX41-216ENST00000513562 PDE4AP27815 886 aa12.56□□□□□ -0.4
DDX41-216ENST00000513562 PLCB4Q15147 1175 aa12.56□□□□□ -0.4
DDX41-216ENST00000513562 CWF19L1Q69YN2 538 aaKnown RBP12.56□□□□□ -0.4
DDX41-216ENST00000513562 CES5AQ6NT32 575 aa12.56□□□□□ -0.4
DDX41-216ENST00000513562 SLC24A5Q71RS6 500 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms