RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 ALPK3Q96L96 1907 aa33.18■■■□□ 2.9
LIMCH1-211ENST00000509638 OATP04181 439 aa33.18■■■□□ 2.9
LIMCH1-211ENST00000509638 SPATA31C1P0DKV0 1188 aa33.18■■■□□ 2.9
LIMCH1-211ENST00000509638 RPA1P27694 616 aa33.18■■■□□ 2.9
LIMCH1-211ENST00000509638 FAM47CQ5HY64 1035 aa33.18■■■□□ 2.9
LIMCH1-211ENST00000509638 CATSPER3Q86XQ3 398 aa33.18■■■□□ 2.9
LIMCH1-211ENST00000509638 TRIP12Q14669 1992 aaPredicted RBP33.17■■■□□ 2.9
LIMCH1-211ENST00000509638 SMIM10L2AP0DMW4 78 aa33.17■■■□□ 2.9
LIMCH1-211ENST00000509638 SMIM10L2BP0DMW5 78 aa33.17■■■□□ 2.9
LIMCH1-211ENST00000509638 POTEGQ6S5H5 508 aa33.17■■■□□ 2.9
LIMCH1-211ENST00000509638 C7orf31Q8N865 590 aa33.17■■■□□ 2.9
LIMCH1-211ENST00000509638 FAM167AQ96KS9 214 aa33.17■■■□□ 2.9
LIMCH1-211ENST00000509638 PCDHA7Q9UN72 937 aa33.17■■■□□ 2.9
LIMCH1-211ENST00000509638 LOXHD1Q8IVV2 1947 aa33.17■■■□□ 2.9
LIMCH1-211ENST00000509638 DKC1O60832 514 aaKnown RBP eCLIP33.17■■■□□ 2.9
LIMCH1-211ENST00000509638 CUTAO60888 179 aa33.17■■■□□ 2.9
LIMCH1-211ENST00000509638 NFRKBQ6P4R8 1299 aa33.17■■■□□ 2.9
LIMCH1-211ENST00000509638 SYMPKQ92797 1274 aaKnown RBP33.17■■■□□ 2.9
LIMCH1-211ENST00000509638 UBA7P41226 1012 aa33.16■■■□□ 2.9
LIMCH1-211ENST00000509638 AXDND1Q5T1B0 1012 aaPredicted RBP33.16■■■□□ 2.9
LIMCH1-211ENST00000509638 SLC39A5Q6ZMH5 540 aa33.16■■■□□ 2.9
LIMCH1-211ENST00000509638 CABP7Q86V35 215 aa33.16■■■□□ 2.9
LIMCH1-211ENST00000509638 C4orf19Q8IY42 314 aa33.16■■■□□ 2.9
LIMCH1-211ENST00000509638 SLC43A3Q8NBI5 491 aa33.16■■■□□ 2.9
LIMCH1-211ENST00000509638 HDAC6Q9UBN7 1215 aa33.16■■■□□ 2.9
LIMCH1-211ENST00000509638 SEPT9Q9UHD8 586 aaPredicted RBP33.16■■■□□ 2.9
LIMCH1-211ENST00000509638 KDM3AQ9Y4C1 1321 aa33.15■■■□□ 2.9
LIMCH1-211ENST00000509638 ARVCFO00192 962 aa33.15■■■□□ 2.9
LIMCH1-211ENST00000509638 PPFIA1Q13136 1202 aa33.15■■■□□ 2.9
LIMCH1-211ENST00000509638 ZRSR1Q15695 479 aaKnown RBP33.15■■■□□ 2.9
LIMCH1-211ENST00000509638 USP49Q70CQ1 688 aa33.15■■■□□ 2.9
LIMCH1-211ENST00000509638 BBXQ8WY36 941 aaPredicted RBP33.15■■■□□ 2.9
LIMCH1-211ENST00000509638 EPSTI1Q96J88 318 aa33.15■■■□□ 2.9
LIMCH1-211ENST00000509638 TMEM150BA6NC51 233 aa33.14■■■□□ 2.9
LIMCH1-211ENST00000509638 SNX17Q15036 470 aa33.14■■■□□ 2.9
LIMCH1-211ENST00000509638 ECM1Q16610 540 aa33.14■■■□□ 2.9
LIMCH1-211ENST00000509638 XKR3Q5GH77 459 aa33.14■■■□□ 2.9
LIMCH1-211ENST00000509638 ZNF579Q8NAF0 562 aaKnown RBP33.14■■■□□ 2.9
LIMCH1-211ENST00000509638 LYPLA2O95372 231 aa33.13■■■□□ 2.89
LIMCH1-211ENST00000509638 YWHABP31946 246 aaKnown RBP33.13■■■□□ 2.89
LIMCH1-211ENST00000509638 SESTD1Q86VW0 696 aa33.13■■■□□ 2.89
LIMCH1-211ENST00000509638 GTF2IRD1Q9UHL9 959 aa33.13■■■□□ 2.89
LIMCH1-211ENST00000509638 HBP1O60381 514 aa33.13■■■□□ 2.89
LIMCH1-211ENST00000509638 STBD1O95210 358 aa33.13■■■□□ 2.89
LIMCH1-211ENST00000509638 INSRRP14616 1297 aa33.13■■■□□ 2.89
LIMCH1-211ENST00000509638 LRRC26Q2I0M4 334 aa33.13■■■□□ 2.89
LIMCH1-211ENST00000509638 PLA2G4FQ68DD2 849 aa33.13■■■□□ 2.89
LIMCH1-211ENST00000509638 ANO5Q75V66 913 aa33.13■■■□□ 2.89
LIMCH1-211ENST00000509638 RASSF8Q8NHQ8 419 aa33.13■■■□□ 2.89
LIMCH1-211ENST00000509638 LMBR1Q8WVP7 490 aa33.13■■■□□ 2.89
LIMCH1-211ENST00000509638 DDX19AQ9NUU7 478 aaKnown RBP33.13■■■□□ 2.89
LIMCH1-211ENST00000509638 SETD4Q9NVD3 440 aa33.13■■■□□ 2.89
LIMCH1-211ENST00000509638 TXLNAP40222 546 aa33.12■■■□□ 2.89
LIMCH1-211ENST00000509638 GRIK4Q16099 956 aa33.12■■■□□ 2.89
LIMCH1-211ENST00000509638 TRIM60Q495X7 471 aa33.12■■■□□ 2.89
LIMCH1-211ENST00000509638 SHC4Q6S5L8 630 aa33.12■■■□□ 2.89
LIMCH1-211ENST00000509638 CDK5RAP3Q96JB5 506 aa33.12■■■□□ 2.89
LIMCH1-211ENST00000509638 SEZ6LQ9BYH1 1024 aa33.12■■■□□ 2.89
LIMCH1-211ENST00000509638 KIAA1024Q9UPX6 916 aa33.12■■■□□ 2.89
LIMCH1-211ENST00000509638 NRCAMQ92823 1304 aa33.11■■■□□ 2.89
LIMCH1-211ENST00000509638 C17orf102A2RUQ5 167 aa33.11■■■□□ 2.89
LIMCH1-211ENST00000509638 DDX11L8A8MPP1 907 aa33.11■■■□□ 2.89
LIMCH1-211ENST00000509638 MUTP22033 750 aa33.11■■■□□ 2.89
LIMCH1-211ENST00000509638 HOXC8P31273 242 aa33.11■■■□□ 2.89
LIMCH1-211ENST00000509638 CDK7P50613 346 aa33.11■■■□□ 2.89
LIMCH1-211ENST00000509638 IGBP1P78318 339 aa33.11■■■□□ 2.89
LIMCH1-211ENST00000509638 PTPN11Q06124 597 aaPredicted RBP33.11■■■□□ 2.89
LIMCH1-211ENST00000509638 HIC1Q14526 733 aa33.11■■■□□ 2.89
LIMCH1-211ENST00000509638 KARSQ15046 597 aaKnown RBP33.11■■■□□ 2.89
LIMCH1-211ENST00000509638 C1orf53Q5VUE5 145 aa33.11■■■□□ 2.89
LIMCH1-211ENST00000509638 GDF6Q6KF10 455 aaPredicted RBP33.11■■■□□ 2.89
LIMCH1-211ENST00000509638 PIGOQ8TEQ8 1089 aa33.11■■■□□ 2.89
LIMCH1-211ENST00000509638 TRAPPC12Q8WVT3 735 aa33.11■■■□□ 2.89
LIMCH1-211ENST00000509638 CCSER1Q9C0I3 900 aa33.11■■■□□ 2.89
LIMCH1-211ENST00000509638 NRBP2Q9NSY0 501 aa33.11■■■□□ 2.89
LIMCH1-211ENST00000509638 MROH7Q68CQ1 1323 aa33.11■■■□□ 2.89
LIMCH1-211ENST00000509638 COL1A2P08123 1366 aa33.1■■■□□ 2.89
LIMCH1-211ENST00000509638 ZBTB42B2RXF5 422 aa33.1■■■□□ 2.89
LIMCH1-211ENST00000509638 ZBTB39O15060 712 aa33.1■■■□□ 2.89
LIMCH1-211ENST00000509638 PQBP1O60828 265 aaKnown RBP33.1■■■□□ 2.89
LIMCH1-211ENST00000509638 GRB10Q13322 594 aa33.1■■■□□ 2.89
LIMCH1-211ENST00000509638 HYIQ5T013 277 aa33.1■■■□□ 2.89
LIMCH1-211ENST00000509638 CALML4Q96GE6 196 aa33.1■■■□□ 2.89
LIMCH1-211ENST00000509638 PNMA5Q96PV4 448 aa33.1■■■□□ 2.89
LIMCH1-211ENST00000509638 SH2D3AQ9BRG2 576 aa33.1■■■□□ 2.89
LIMCH1-211ENST00000509638 A0A087WWV3 80 aa33.09■■■□□ 2.89
LIMCH1-211ENST00000509638 PLIN2Q99541 437 aa33.09■■■□□ 2.89
LIMCH1-211ENST00000509638 NT5C3AQ9H0P0 336 aa33.09■■■□□ 2.89
LIMCH1-211ENST00000509638 TRMT13Q9NUP7 481 aaKnown RBP33.09■■■□□ 2.89
LIMCH1-211ENST00000509638 ATP11BQ9Y2G3 1177 aa33.09■■■□□ 2.89
LIMCH1-211ENST00000509638 SLC26A4O43511 780 aa33.09■■■□□ 2.89
LIMCH1-211ENST00000509638 RTP1P59025 263 aa33.09■■■□□ 2.89
LIMCH1-211ENST00000509638 MTERF2Q49AM1 385 aa33.09■■■□□ 2.89
LIMCH1-211ENST00000509638 TMEM119Q4V9L6 283 aa33.09■■■□□ 2.89
LIMCH1-211ENST00000509638 FAM126BQ8IXS8 530 aa33.09■■■□□ 2.89
LIMCH1-211ENST00000509638 NACC1Q96RE7 527 aa33.09■■■□□ 2.89
LIMCH1-211ENST00000509638 NIFKQ9BYG3 293 aaKnown RBP33.09■■■□□ 2.89
LIMCH1-211ENST00000509638 ZNF200P98182 395 aaPredicted RBP33.08■■■□□ 2.89
LIMCH1-211ENST00000509638 ZNF484Q5JVG2 852 aa33.08■■■□□ 2.89
LIMCH1-211ENST00000509638 RESP18Q5W5W9 173 aa33.08■■■□□ 2.89
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms