RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 RAB34Q9BZG1 259 aa12.83□□□□□ -0.36
LIMCH1-210ENST00000509454 ZSCAN16Q9H4T2 348 aaPredicted RBP12.83□□□□□ -0.36
LIMCH1-210ENST00000509454 TUBE1Q9UJT0 475 aa12.83□□□□□ -0.36
LIMCH1-210ENST00000509454 TBX21Q9UL17 535 aa12.83□□□□□ -0.36
LIMCH1-210ENST00000509454 CEP131Q9UPN4 1083 aa12.83□□□□□ -0.36
LIMCH1-210ENST00000509454 MAFBQ9Y5Q3 323 aaPredicted RBP12.83□□□□□ -0.36
LIMCH1-210ENST00000509454 IGSF9BQ9UPX0 1349 aa12.82□□□□□ -0.36
LIMCH1-210ENST00000509454 TRIP12Q14669 1992 aaPredicted RBP12.82□□□□□ -0.36
LIMCH1-210ENST00000509454 RRN3P2A6NIE6 340 aa12.82□□□□□ -0.36
LIMCH1-210ENST00000509454 DKC1O60832 514 aaKnown RBP eCLIP12.82□□□□□ -0.36
LIMCH1-210ENST00000509454 TIMP1P01033 207 aa12.82□□□□□ -0.36
LIMCH1-210ENST00000509454 P4HBP07237 508 aaKnown RBP12.82□□□□□ -0.36
LIMCH1-210ENST00000509454 ZSCAN22P10073 491 aaPredicted RBP12.82□□□□□ -0.36
LIMCH1-210ENST00000509454 PDIA4P13667 645 aaKnown RBP12.82□□□□□ -0.36
LIMCH1-210ENST00000509454 THPOP40225 353 aa12.82□□□□□ -0.36
LIMCH1-210ENST00000509454 QARSP47897 775 aaKnown RBP12.82□□□□□ -0.36
LIMCH1-210ENST00000509454 PTK7Q13308 1070 aa12.82□□□□□ -0.36
LIMCH1-210ENST00000509454 HIC1Q14526 733 aa12.82□□□□□ -0.36
LIMCH1-210ENST00000509454 DTHD1Q6ZMT9 781 aa12.82□□□□□ -0.36
LIMCH1-210ENST00000509454 CCDC43Q96MW1 224 aaKnown RBP12.82□□□□□ -0.36
LIMCH1-210ENST00000509454 EIF2AK1Q9BQI3 630 aaKnown RBP12.82□□□□□ -0.36
LIMCH1-210ENST00000509454 NOC4LQ9BVI4 516 aaKnown RBP12.82□□□□□ -0.36
LIMCH1-210ENST00000509454 FAM49AQ9H0Q0 323 aaPredicted RBP12.82□□□□□ -0.36
LIMCH1-210ENST00000509454 RGL1Q9NZL6 768 aa12.82□□□□□ -0.36
LIMCH1-210ENST00000509454 CEP290O15078 2479 aa12.81□□□□□ -0.36
LIMCH1-210ENST00000509454 LAD1O00515 517 aa12.81□□□□□ -0.36
LIMCH1-210ENST00000509454 BMP15O95972 392 aa12.81□□□□□ -0.36
LIMCH1-210ENST00000509454 ATP4AP20648 1035 aa12.81□□□□□ -0.36
LIMCH1-210ENST00000509454 MAGEA10P43363 369 aaPredicted RBP12.81□□□□□ -0.36
LIMCH1-210ENST00000509454 SF3A1Q15459 793 aaKnown RBP12.81□□□□□ -0.36
LIMCH1-210ENST00000509454 MTERF2Q49AM1 385 aa12.81□□□□□ -0.36
LIMCH1-210ENST00000509454 ZNF484Q5JVG2 852 aa12.81□□□□□ -0.36
LIMCH1-210ENST00000509454 B3GNT9Q6UX72 402 aa12.81□□□□□ -0.36
LIMCH1-210ENST00000509454 CHRDL2Q6WN34 429 aa12.81□□□□□ -0.36
LIMCH1-210ENST00000509454 TMEM199Q8N511 208 aa12.81□□□□□ -0.36
LIMCH1-210ENST00000509454 C4orf32Q8N8J7 132 aa12.81□□□□□ -0.36
LIMCH1-210ENST00000509454 ZBTB10Q96DT7 871 aa12.81□□□□□ -0.36
LIMCH1-210ENST00000509454 LXNQ9BS40 222 aa12.81□□□□□ -0.36
LIMCH1-210ENST00000509454 LRWD1Q9UFC0 647 aa12.81□□□□□ -0.36
LIMCH1-210ENST00000509454 UMODL1Q5DID0 1318 aa12.81□□□□□ -0.36
LIMCH1-210ENST00000509454 MKI67P46013 3256 aaKnown RBP12.8□□□□□ -0.36
LIMCH1-210ENST00000509454 VWA3AA6NCI4 1184 aa12.8□□□□□ -0.36
LIMCH1-210ENST00000509454 ZNF862O60290 1169 aa12.8□□□□□ -0.36
LIMCH1-210ENST00000509454 F13A1P00488 732 aa12.8□□□□□ -0.36
LIMCH1-210ENST00000509454 CTSHP09668 335 aa12.8□□□□□ -0.36
LIMCH1-210ENST00000509454 ITGB8P26012 769 aa12.8□□□□□ -0.36
LIMCH1-210ENST00000509454 ATP2C1P98194 919 aaPredicted RBP12.8□□□□□ -0.36
LIMCH1-210ENST00000509454 FPGSQ05932 587 aa12.8□□□□□ -0.36
LIMCH1-210ENST00000509454 SPIRE1Q08AE8 756 aa12.8□□□□□ -0.36
LIMCH1-210ENST00000509454 PKP1Q13835 747 aa12.8□□□□□ -0.36
LIMCH1-210ENST00000509454 ZRSR1Q15695 479 aaKnown RBP12.8□□□□□ -0.36
LIMCH1-210ENST00000509454 XKR3Q5GH77 459 aa12.8□□□□□ -0.36
LIMCH1-210ENST00000509454 PRPF38BQ5VTL8 546 aaKnown RBP12.8□□□□□ -0.36
LIMCH1-210ENST00000509454 RUFY4Q6ZNE9 571 aa12.8□□□□□ -0.36
LIMCH1-210ENST00000509454 RSPH3Q86UC2 560 aa12.8□□□□□ -0.36
LIMCH1-210ENST00000509454 SERINC5Q86VE9 423 aa12.8□□□□□ -0.36
LIMCH1-210ENST00000509454 METTL13Q8N6R0 699 aa12.8□□□□□ -0.36
LIMCH1-210ENST00000509454 CAGE1Q8TC20 777 aa12.8□□□□□ -0.36
LIMCH1-210ENST00000509454 NEK9Q8TD19 979 aa12.8□□□□□ -0.36
LIMCH1-210ENST00000509454 DHX38Q92620 1227 aaKnown RBP12.8□□□□□ -0.36
LIMCH1-210ENST00000509454 SCLYQ96I15 445 aa12.8□□□□□ -0.36
LIMCH1-210ENST00000509454 ZNF396Q96N95 335 aaPredicted RBP12.8□□□□□ -0.36
LIMCH1-210ENST00000509454 FTOQ9C0B1 505 aaKnown RBP eCLIP12.8□□□□□ -0.36
LIMCH1-210ENST00000509454 UBE2OQ9C0C9 1292 aaKnown RBP12.8□□□□□ -0.36
LIMCH1-210ENST00000509454 ZSWIM4Q9H7M6 989 aa12.8□□□□□ -0.36
LIMCH1-210ENST00000509454 CLIC4Q9Y696 253 aa12.8□□□□□ -0.36
LIMCH1-210ENST00000509454 WDR81Q562E7 1941 aa12.8□□□□□ -0.36
LIMCH1-210ENST00000509454 TMEM150BA6NC51 233 aa12.79□□□□□ -0.36
LIMCH1-210ENST00000509454 COL1A2P08123 1366 aa12.79□□□□□ -0.36
LIMCH1-210ENST00000509454 KLRC1P26715 233 aa12.79□□□□□ -0.36
LIMCH1-210ENST00000509454 CCT6AP40227 531 aaKnown RBP12.79□□□□□ -0.36
LIMCH1-210ENST00000509454 PRPHP41219 470 aa12.79□□□□□ -0.36
LIMCH1-210ENST00000509454 FXR2P51116 673 aaKnown RBP eCLIP12.79□□□□□ -0.36
LIMCH1-210ENST00000509454 HAUS3Q68CZ6 603 aa12.79□□□□□ -0.36
LIMCH1-210ENST00000509454 PLA2G4FQ68DD2 849 aa12.79□□□□□ -0.36
LIMCH1-210ENST00000509454 MFSD5Q6N075 450 aa12.79□□□□□ -0.36
LIMCH1-210ENST00000509454 TAF2Q6P1X5 1199 aa12.79□□□□□ -0.36
LIMCH1-210ENST00000509454 MTHFD1LQ6UB35 978 aa12.79□□□□□ -0.36
LIMCH1-210ENST00000509454 CTAGE1Q96RT6 745 aa12.79□□□□□ -0.36
LIMCH1-210ENST00000509454 SH2D3AQ9BRG2 576 aa12.79□□□□□ -0.36
LIMCH1-210ENST00000509454 M0QZ92 97 aa12.78□□□□□ -0.36
LIMCH1-210ENST00000509454 CKBP12277 381 aa12.78□□□□□ -0.36
LIMCH1-210ENST00000509454 CSF2RAP15509 400 aa12.78□□□□□ -0.36
LIMCH1-210ENST00000509454 SELPP16109 830 aa12.78□□□□□ -0.36
LIMCH1-210ENST00000509454 HOXC8P31273 242 aa12.78□□□□□ -0.36
LIMCH1-210ENST00000509454 TBC1D8BQ0IIM8 1120 aa12.78□□□□□ -0.36
LIMCH1-210ENST00000509454 PPIGQ13427 754 aaKnown RBP eCLIP12.78□□□□□ -0.36
LIMCH1-210ENST00000509454 STK38Q15208 465 aa12.78□□□□□ -0.36
LIMCH1-210ENST00000509454 XKR9Q5GH70 373 aa12.78□□□□□ -0.36
LIMCH1-210ENST00000509454 MARCH8Q5T0T0 291 aa12.78□□□□□ -0.36
LIMCH1-210ENST00000509454 KRT79Q5XKE5 535 aa12.78□□□□□ -0.36
LIMCH1-210ENST00000509454 LRRC8DQ7L1W4 858 aa12.78□□□□□ -0.36
LIMCH1-210ENST00000509454 OTUD6AQ7L8S5 288 aa12.78□□□□□ -0.36
LIMCH1-210ENST00000509454 DEFB128Q7Z7B8 93 aa12.78□□□□□ -0.36
LIMCH1-210ENST00000509454 RASSF8Q8NHQ8 419 aa12.78□□□□□ -0.36
LIMCH1-210ENST00000509454 SNX29Q8TEQ0 813 aa12.78□□□□□ -0.36
LIMCH1-210ENST00000509454 DNAJB3Q8WWF6 145 aa12.78□□□□□ -0.36
LIMCH1-210ENST00000509454 WNT8BQ93098 351 aa12.78□□□□□ -0.36
LIMCH1-210ENST00000509454 CEP170P1Q96L14 293 aa12.78□□□□□ -0.36
LIMCH1-210ENST00000509454 SUGCTQ9HAC7 445 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms