RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 BTDP43251 543 aa5.62□□□□□ -1.51
USP54-216ENST00000498143 PFKPQ01813 784 aa5.62□□□□□ -1.51
USP54-216ENST00000498143 CEBPZQ03701 1054 aaKnown RBP5.62□□□□□ -1.51
USP54-216ENST00000498143 SHQ1Q6PI26 577 aaKnown RBP5.62□□□□□ -1.51
USP54-216ENST00000498143 TRMT1LQ7Z2T5 733 aaKnown RBP5.62□□□□□ -1.51
USP54-216ENST00000498143 TRIM74Q86UV6 250 aa5.62□□□□□ -1.51
USP54-216ENST00000498143 TRIM73Q86UV7 250 aa5.62□□□□□ -1.51
USP54-216ENST00000498143 PPFIBP1Q86W92 1011 aa5.62□□□□□ -1.51
USP54-216ENST00000498143 CCDC148Q8NFR7 591 aa5.62□□□□□ -1.51
USP54-216ENST00000498143 ATP6V0A1Q93050 837 aa5.62□□□□□ -1.51
USP54-216ENST00000498143 ABHD16BQ9H3Z7 469 aa5.62□□□□□ -1.51
USP54-216ENST00000498143 TMEM260Q9NX78 707 aa5.62□□□□□ -1.51
USP54-216ENST00000498143 SLC8A2Q9UPR5 921 aa5.62□□□□□ -1.51
USP54-216ENST00000498143 MAP3K2Q9Y2U5 619 aa5.62□□□□□ -1.51
USP54-216ENST00000498143 FRMD3A2A2Y4 597 aa5.61□□□□□ -1.51
USP54-216ENST00000498143 K7ELQ4 463 aaPredicted RBP5.61□□□□□ -1.51
USP54-216ENST00000498143 M0R2C6 588 aa5.61□□□□□ -1.51
USP54-216ENST00000498143 SLC26A4O43511 780 aa5.61□□□□□ -1.51
USP54-216ENST00000498143 DDHD2O94830 711 aa5.61□□□□□ -1.51
USP54-216ENST00000498143 DYNC1I2Q13409 638 aaKnown RBP5.61□□□□□ -1.51
USP54-216ENST00000498143 MVPQ14764 893 aaKnown RBP5.61□□□□□ -1.51
USP54-216ENST00000498143 ZBTB41Q5SVQ8 909 aa5.61□□□□□ -1.51
USP54-216ENST00000498143 RARS2Q5T160 578 aaKnown RBP5.61□□□□□ -1.51
USP54-216ENST00000498143 KSR2Q6VAB6 950 aa5.61□□□□□ -1.51
USP54-216ENST00000498143 MAPKAPK5Q8IW41 473 aa5.61□□□□□ -1.51
USP54-216ENST00000498143 HACE1Q8IYU2 909 aa5.61□□□□□ -1.51
USP54-216ENST00000498143 SPICE1Q8N0Z3 855 aa5.61□□□□□ -1.51
USP54-216ENST00000498143 SAMD3Q8N6K7 520 aa5.61□□□□□ -1.51
USP54-216ENST00000498143 BBOF1Q8ND07 529 aa5.61□□□□□ -1.51
USP54-216ENST00000498143 TOX2Q96NM4 488 aa5.61□□□□□ -1.51
USP54-216ENST00000498143 CRNKL1Q9BZJ0 848 aaKnown RBP5.61□□□□□ -1.51
USP54-216ENST00000498143 CYP26B1Q9NR63 512 aa5.61□□□□□ -1.51
USP54-216ENST00000498143 DAAM1Q9Y4D1 1078 aa5.61□□□□□ -1.51
USP54-216ENST00000498143 PCDHB7Q9Y5E2 793 aa5.61□□□□□ -1.51
USP54-216ENST00000498143 TACC1O75410 805 aa5.61□□□□□ -1.51
USP54-216ENST00000498143 URI1O94763 535 aaPredicted RBP5.61□□□□□ -1.51
USP54-216ENST00000498143 KRT7P08729 469 aa5.61□□□□□ -1.51
USP54-216ENST00000498143 PTPRAP18433 802 aa5.61□□□□□ -1.51
USP54-216ENST00000498143 KLRC2P26717 231 aa5.61□□□□□ -1.51
USP54-216ENST00000498143 MAN1A1P33908 653 aa5.61□□□□□ -1.51
USP54-216ENST00000498143 MAGEA8P43361 318 aa5.61□□□□□ -1.51
USP54-216ENST00000498143 ZXDAP98168 799 aa5.61□□□□□ -1.51
USP54-216ENST00000498143 DHX8Q14562 1220 aaKnown RBP5.61□□□□□ -1.51
USP54-216ENST00000498143 SLC10A5Q5PT55 438 aa5.61□□□□□ -1.51
USP54-216ENST00000498143 C11orf96Q7Z7L8 435 aa5.61□□□□□ -1.51
USP54-216ENST00000498143 EFCAB13Q8IY85 973 aa5.61□□□□□ -1.51
USP54-216ENST00000498143 MGARPQ8TDB4 240 aa5.61□□□□□ -1.51
USP54-216ENST00000498143 MRPL38Q96DV4 380 aaKnown RBP5.61□□□□□ -1.51
USP54-216ENST00000498143 NELL2Q99435 816 aa5.61□□□□□ -1.51
USP54-216ENST00000498143 RRP15Q9Y3B9 282 aaKnown RBP5.61□□□□□ -1.51
USP54-216ENST00000498143 SNCAIPQ9Y6H5 919 aa5.61□□□□□ -1.51
USP54-216ENST00000498143 URB1O60287 2271 aaKnown RBP5.61□□□□□ -1.51
USP54-216ENST00000498143 TBC1D12O60347 775 aa5.61□□□□□ -1.51
USP54-216ENST00000498143 TSPAN9O75954 239 aa5.61□□□□□ -1.51
USP54-216ENST00000498143 PCCAP05165 728 aaPredicted RBP5.61□□□□□ -1.51
USP54-216ENST00000498143 ALDH7A1P49419 539 aaKnown RBP5.61□□□□□ -1.51
USP54-216ENST00000498143 BACE1P56817 501 aa5.61□□□□□ -1.51
USP54-216ENST00000498143 C4orf17Q53FE4 359 aa5.61□□□□□ -1.51
USP54-216ENST00000498143 KRT40Q6A162 431 aa5.61□□□□□ -1.51
USP54-216ENST00000498143 MMS22LQ6ZRQ5 1243 aa5.61□□□□□ -1.51
USP54-216ENST00000498143 ASCL5Q7RTU5 278 aa5.61□□□□□ -1.51
USP54-216ENST00000498143 ATCAYQ86WG3 371 aa5.61□□□□□ -1.51
USP54-216ENST00000498143 PLEKHM2Q8IWE5 1019 aa5.61□□□□□ -1.51
USP54-216ENST00000498143 DCLK2Q8N568 766 aa5.61□□□□□ -1.51
USP54-216ENST00000498143 CASP10Q92851 521 aa5.61□□□□□ -1.51
USP54-216ENST00000498143 PABPC5Q96DU9 382 aaKnown RBP5.61□□□□□ -1.51
USP54-216ENST00000498143 SPATA17Q96L03 361 aa5.61□□□□□ -1.51
USP54-216ENST00000498143 GNL3Q9BVP2 549 aaKnown RBP eCLIP5.61□□□□□ -1.51
USP54-216ENST00000498143 SYNDIG1Q9H7V2 258 aa5.61□□□□□ -1.51
USP54-216ENST00000498143 VCX3AQ9NNX9 186 aa5.61□□□□□ -1.51
USP54-216ENST00000498143 HERC5Q9UII4 1024 aaKnown RBP5.61□□□□□ -1.51
USP54-216ENST00000498143 MTCH2Q9Y6C9 303 aa5.61□□□□□ -1.51
USP54-216ENST00000498143 USP9XQ93008 2570 aaPredicted RBP5.61□□□□□ -1.51
USP54-216ENST00000498143 FAM196BA6NMK8 535 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 TBC1D4O60343 1298 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 CAVIN2O95810 425 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 SKILP12757 684 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 TXLNAP40222 546 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 ABCG1P45844 678 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 GNAI1P63096 354 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 BEX3Q00994 111 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 ZNF252P-AS1Q0IIN9 211 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 ATP2B3Q16720 1220 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 C2orf27AQ580R0 203 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 PLPP4Q5VZY2 271 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 UNQ6494/PRO21346Q6UXR6 183 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 C16orf59Q7L2K0 433 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 CLASRPQ8N2M8 674 aaKnown RBP5.6□□□□□ -1.51
USP54-216ENST00000498143 DTWD2Q8NBA8 298 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 CHURC1Q8WUH1 139 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 BAP1Q92560 729 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 GBP3Q9H0R5 595 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 CLMPQ9H6B4 373 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 PARVBQ9HBI1 364 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 ZNF215Q9UL58 517 aaPredicted RBP5.6□□□□□ -1.51
USP54-216ENST00000498143 SLC45A1Q9Y2W3 748 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 KNTC1P50748 2209 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 USO1O60763 962 aaKnown RBP5.6□□□□□ -1.51
USP54-216ENST00000498143 ENTPD3O75355 529 aa5.6□□□□□ -1.51
USP54-216ENST00000498143 SNUPNO95149 360 aaKnown RBP5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms