RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 PCDHA7Q9UN72 937 aa13.34□□□□□ -0.27
CUX1-210ENST00000497815 MAFBQ9Y5Q3 323 aaPredicted RBP13.34□□□□□ -0.27
CUX1-210ENST00000497815 GRIN2DO15399 1336 aa13.34□□□□□ -0.27
CUX1-210ENST00000497815 A0A0U1RQG5 324 aaPredicted RBP13.33□□□□□ -0.28
CUX1-210ENST00000497815 DDX11L8A8MPP1 907 aa13.33□□□□□ -0.28
CUX1-210ENST00000497815 CUTAO60888 179 aa13.33□□□□□ -0.28
CUX1-210ENST00000497815 OATP04181 439 aa13.33□□□□□ -0.28
CUX1-210ENST00000497815 SPATA31C1P0DKV0 1188 aa13.33□□□□□ -0.28
CUX1-210ENST00000497815 SMIM10L2AP0DMW4 78 aa13.33□□□□□ -0.28
CUX1-210ENST00000497815 SMIM10L2BP0DMW5 78 aa13.33□□□□□ -0.28
CUX1-210ENST00000497815 SLC26A2P50443 739 aa13.33□□□□□ -0.28
CUX1-210ENST00000497815 IGBP1P78318 339 aa13.33□□□□□ -0.28
CUX1-210ENST00000497815 POTEGQ6S5H5 508 aa13.33□□□□□ -0.28
CUX1-210ENST00000497815 USP49Q70CQ1 688 aa13.33□□□□□ -0.28
CUX1-210ENST00000497815 NEK9Q8TD19 979 aa13.33□□□□□ -0.28
CUX1-210ENST00000497815 ATP8B4Q8TF62 1192 aa13.33□□□□□ -0.28
CUX1-210ENST00000497815 SYMPKQ92797 1274 aaKnown RBP13.33□□□□□ -0.28
CUX1-210ENST00000497815 EPSTI1Q96J88 318 aa13.33□□□□□ -0.28
CUX1-210ENST00000497815 CDK5RAP3Q96JB5 506 aa13.33□□□□□ -0.28
CUX1-210ENST00000497815 SH2D3AQ9BRG2 576 aa13.33□□□□□ -0.28
CUX1-210ENST00000497815 MMTAG2Q9BU76 263 aaKnown RBP13.33□□□□□ -0.28
CUX1-210ENST00000497815 ZSWIM4Q9H7M6 989 aa13.33□□□□□ -0.28
CUX1-210ENST00000497815 HDAC6Q9UBN7 1215 aa13.33□□□□□ -0.28
CUX1-210ENST00000497815 SEPT9Q9UHD8 586 aaPredicted RBP13.33□□□□□ -0.28
CUX1-210ENST00000497815 MORC2Q9Y6X9 1032 aaPredicted RBP13.33□□□□□ -0.28
CUX1-210ENST00000497815 BRCA2P51587 3418 aa13.33□□□□□ -0.28
CUX1-210ENST00000497815 ZBTB39O15060 712 aa13.32□□□□□ -0.28
CUX1-210ENST00000497815 DKC1O60832 514 aaKnown RBP eCLIP13.32□□□□□ -0.281e-7■■■■■ 35.1
CUX1-210ENST00000497815 RPA1P27694 616 aa13.32□□□□□ -0.28
CUX1-210ENST00000497815 PPFIA1Q13136 1202 aa13.32□□□□□ -0.28
CUX1-210ENST00000497815 ECM1Q16610 540 aa13.32□□□□□ -0.28
CUX1-210ENST00000497815 AXDND1Q5T1B0 1012 aaPredicted RBP13.32□□□□□ -0.28
CUX1-210ENST00000497815 PLA2G4FQ68DD2 849 aa13.32□□□□□ -0.28
CUX1-210ENST00000497815 SLC39A5Q6ZMH5 540 aa13.32□□□□□ -0.28
CUX1-210ENST00000497815 PIGOQ8TEQ8 1089 aa13.32□□□□□ -0.28
CUX1-210ENST00000497815 TRAPPC12Q8WVT3 735 aa13.32□□□□□ -0.28
CUX1-210ENST00000497815 FAM167AQ96KS9 214 aa13.32□□□□□ -0.28
CUX1-210ENST00000497815 POLR3CQ9BUI4 534 aaPredicted RBP13.32□□□□□ -0.28
CUX1-210ENST00000497815 TUFT1Q9NNX1 390 aa13.32□□□□□ -0.28
CUX1-210ENST00000497815 NRBP2Q9NSY0 501 aa13.32□□□□□ -0.28
CUX1-210ENST00000497815 DDX19AQ9NUU7 478 aaKnown RBP13.32□□□□□ -0.28
CUX1-210ENST00000497815 SETD4Q9NVD3 440 aa13.32□□□□□ -0.28
CUX1-210ENST00000497815 KIAA1024Q9UPX6 916 aa13.32□□□□□ -0.28
CUX1-210ENST00000497815 ATP11BQ9Y2G3 1177 aa13.32□□□□□ -0.28
CUX1-210ENST00000497815 STK24Q9Y6E0 443 aa13.32□□□□□ -0.28
CUX1-210ENST00000497815 ARVCFO00192 962 aa13.31□□□□□ -0.28
CUX1-210ENST00000497815 HBP1O60381 514 aa13.31□□□□□ -0.28
CUX1-210ENST00000497815 PQBP1O60828 265 aaKnown RBP13.31□□□□□ -0.28
CUX1-210ENST00000497815 STBD1O95210 358 aa13.31□□□□□ -0.28
CUX1-210ENST00000497815 INSRRP14616 1297 aa13.31□□□□□ -0.28
CUX1-210ENST00000497815 YWHABP31946 246 aaKnown RBP13.31□□□□□ -0.28
CUX1-210ENST00000497815 TXLNAP40222 546 aa13.31□□□□□ -0.28
CUX1-210ENST00000497815 ZNF200P98182 395 aaPredicted RBP13.31□□□□□ -0.28
CUX1-210ENST00000497815 HIC1Q14526 733 aa13.31□□□□□ -0.28
CUX1-210ENST00000497815 KARSQ15046 597 aaKnown RBP13.31□□□□□ -0.28
CUX1-210ENST00000497815 GRIK4Q16099 956 aa13.31□□□□□ -0.28
CUX1-210ENST00000497815 LRRC26Q2I0M4 334 aa13.31□□□□□ -0.28
CUX1-210ENST00000497815 TRIM60Q495X7 471 aa13.31□□□□□ -0.28
CUX1-210ENST00000497815 MTERF2Q49AM1 385 aa13.31□□□□□ -0.28
CUX1-210ENST00000497815 XKR3Q5GH77 459 aa13.31□□□□□ -0.28
CUX1-210ENST00000497815 NFRKBQ6P4R8 1299 aa13.31□□□□□ -0.28
CUX1-210ENST00000497815 SHC4Q6S5L8 630 aa13.31□□□□□ -0.28
CUX1-210ENST00000497815 UBE2Q1Q7Z7E8 422 aa13.31□□□□□ -0.28
CUX1-210ENST00000497815 C4orf19Q8IY42 314 aa13.31□□□□□ -0.28
CUX1-210ENST00000497815 BBXQ8WY36 941 aaPredicted RBP13.31□□□□□ -0.28
CUX1-210ENST00000497815 ZBTB10Q96DT7 871 aa13.31□□□□□ -0.28
CUX1-210ENST00000497815 CALML4Q96GE6 196 aa13.31□□□□□ -0.28
CUX1-210ENST00000497815 CCDC43Q96MW1 224 aaKnown RBP13.31□□□□□ -0.28
CUX1-210ENST00000497815 PNMA5Q96PV4 448 aa13.31□□□□□ -0.28
CUX1-210ENST00000497815 PANK2Q9BZ23 570 aa13.31□□□□□ -0.28
CUX1-210ENST00000497815 C17orf102A2RUQ5 167 aa13.3□□□□□ -0.28
CUX1-210ENST00000497815 NPEPPSP55786 919 aa13.3□□□□□ -0.28
CUX1-210ENST00000497815 RTP1P59025 263 aa13.3□□□□□ -0.28
CUX1-210ENST00000497815 GRB10Q13322 594 aa13.3□□□□□ -0.28
CUX1-210ENST00000497815 XKR9Q5GH70 373 aa13.3□□□□□ -0.28
CUX1-210ENST00000497815 GDF6Q6KF10 455 aaPredicted RBP13.3□□□□□ -0.28
CUX1-210ENST00000497815 ANO5Q75V66 913 aa13.3□□□□□ -0.28
CUX1-210ENST00000497815 OTUD6AQ7L8S5 288 aa13.3□□□□□ -0.28
CUX1-210ENST00000497815 PDILTQ8N807 584 aa13.3□□□□□ -0.28
CUX1-210ENST00000497815 ZNF579Q8NAF0 562 aaKnown RBP13.3□□□□□ -0.28
CUX1-210ENST00000497815 LMBR1Q8WVP7 490 aa13.3□□□□□ -0.28
CUX1-210ENST00000497815 NACC1Q96RE7 527 aa13.3□□□□□ -0.28
CUX1-210ENST00000497815 TRPV6Q9H1D0 765 aa13.3□□□□□ -0.28
CUX1-210ENST00000497815 BMP2KQ9NSY1 1161 aaPredicted RBP13.3□□□□□ -0.28
CUX1-210ENST00000497815 TRMT13Q9NUP7 481 aaKnown RBP13.3□□□□□ -0.28
CUX1-210ENST00000497815 GTF2IRD1Q9UHL9 959 aa13.3□□□□□ -0.28
CUX1-210ENST00000497815 NOD1Q9Y239 953 aa13.3□□□□□ -0.28
CUX1-210ENST00000497815 KDM3AQ9Y4C1 1321 aa13.3□□□□□ -0.28
CUX1-210ENST00000497815 GOLGA6L4A6NEF3 574 aa13.29□□□□□ -0.28
CUX1-210ENST00000497815 E9PMD0 336 aa13.29□□□□□ -0.28
CUX1-210ENST00000497815 B4GALT4O60513 344 aa13.29□□□□□ -0.28
CUX1-210ENST00000497815 LYPLA2O95372 231 aa13.29□□□□□ -0.28
CUX1-210ENST00000497815 PLCG1P19174 1290 aa13.29□□□□□ -0.28
CUX1-210ENST00000497815 CDK7P50613 346 aa13.29□□□□□ -0.28
CUX1-210ENST00000497815 TLE2Q04725 743 aa13.29□□□□□ -0.28
CUX1-210ENST00000497815 PTGISQ16647 500 aa13.29□□□□□ -0.28
CUX1-210ENST00000497815 CSPP1Q1MSJ5 1256 aa13.29□□□□□ -0.28
CUX1-210ENST00000497815 TMEM119Q4V9L6 283 aa13.29□□□□□ -0.28
CUX1-210ENST00000497815 ZNF484Q5JVG2 852 aa13.29□□□□□ -0.28
CUX1-210ENST00000497815 RESP18Q5W5W9 173 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms